New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4808179	2 (0.030)	16 (0.250)	13/238	2.4	47.3%	intergenic (‑288/‑267)	PP_4234/dsbD‑II	bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2
	?	NC_002947	= 5988949	34 (0.530)					intergenic (+243/‑303)	kefB‑III/PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA

TGTATAGGGCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4808027‑4808179 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gagatcgagcgccgcccgcgCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCTGGCCAATCCCTCCTGTGCCAGGCGCGCGCGACCGCCTTGTTTGTACGACGCGATATCGAGGCGTGCGCCAGGGGGCTCGCGTGCGCGTCCCACAGGAATAACTGGCC  <  NC_002947/5988949‑5988804                                                                                                                                                                                                                                                                                                             TGTATAGGGCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGAGTGTCAGCGCCTGGGAGGTGGTCGCCGGGCGAGTAGCGGCGGCTGGGGGATCGAGCGCCGC                                                                                                                                                         >  2:344514/1‑148         GCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGAGTTTCAGCGCCTGGGAGGTGGACGCCGCGAGGGTGTCAGCGGCTGGGAGATCGAGCGCCGCCCGCGCG                                                                                                                                                  >  5:360690/1‑147                 CGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGACTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCG                                                                                                                                          >  3:392053/1‑147                 CGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGGTTTCAGCGCCTGGGAGGTGCTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCG                                                                                                                                          <  5:92644/147‑1                          CGCTTTGGCGGGTAGGTGTTTGGCGCGAGGCTTTCAGAGCCTGGTAGGTTTTCGCCGGTGGATTTTCAGCGCCGGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACC                                                                                                                                <  1:344514/148‑1                                  cgtGTAGGTGTTTGGCGGCAGGAGTGCCTCGCCTGGTAGGTGTTCGCCGGTTGTTTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCC                                                                                                                          <  6:360690/143‑1                                           gaTTGGCGGTAGTGTTTCAGTGCCTGGGAGGTGTTGGCCGGGGGAGGTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTT                                                                                                                <  4:178709/145‑1                                               GGCGGGAGGATAGCTGCGCCGGGGAGGTCTGGGCCGGGGGTATGTGAGCGCCTGGGAGCTGTTCGCCGTGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCgg                                                                                                            <  8:374587/147‑3                                                    gatGTTTTCAGCTCCTGTGAGGTTTCGGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAA                                                                                                       <  1:322379/144‑1                                                                                CCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGAACGAGCGCCGCCCGCGCGGCGCTTCGCG                                                                                                                                        <  1:146877/86‑1                                                                                CCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGAACGAGCGCCGCCCGCGCGGCGCTTCGCG                                                                                                                                        >  2:146877/1‑86                                                                                    GGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGC                                                                                                                                                         <  5:263957/65‑1                                                                                    GGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGC                                                                                                                                                         >  6:263957/1‑65                                                                                     GGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGGGATTTGCGCGCGACCGCCTTG                                                                      >  3:157942/1‑147                                                                                      GATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGGGATTTGCGCGCGACCGCCTTGgg                                                                    <  1:232760/148‑3                                                                                       ATTTTCAGCGCCTGGGAGGAGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGGGATTTGCGCGCGACCGCCTTGgg                                                                    >  3:273917/1‑145                                                                                          TTCATCGCCTGGGAGGTGTTCGCCGGGAGAGTTACAGCGCCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGGGATTTGCGCGCGACCGCCTTGgggca                                                                 <  8:148564/147‑6                                                                                           TCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTC                                                                                                              <  7:170642/101‑1                                                                                               gaattttGAGGTGTTTGCCGGAGGATTTTCAGCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTC‑GGCCAGTCCCTCCTGCACCAGTCGCGCGCGACCGCCTTGTTTGTACGACG                                                           <  7:92166/140‑1                                                                                                                                       AGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCTGGCCAATCCCTCCTGTGCCAGGCGCGCGCGACCGCCTTGTTTGTACGACGCGATATCGAGGCGTGCGCCAGGGGGCTCGCGTGCGCGTC                    <  8:255841/147‑1                                                                                                                                          TCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCTGGCCAATCCCTCCTGTGCCAGGCGCGCGCGACCGCCTTGTTTGTACGACGCGATATCGAGGCGTGCGCCAGGGGGCTCGCGTGCGCGTCCCAC                <  7:158269/148‑1                                                                                                                                            GAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCTGGCCAATCCCTCCTGTGCCAGGCGCGCGCGACCGCCTTGTTTGTACGACGCGATATCGAGGCGTGCGCCAGGGGGCTCGCGTGCGCGTCCCACA               <  2:132541/147‑1                                                                                                                                              GCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCTGGCCAATCCCTCCTGTGCCAGGCGCGCGCGACCGCCTTGTTTGTACGACGCGATATCGAGGCGTGCGCCAGGGGGCTCGCGTGCGCGTCCCACAG              >  3:325866/1‑146                                                                                                                                                   GCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCTGGCCAATCCCTCCTGTGCCAGGCGCGCGCGACCGCCTTGTTTGTACGACGCGATATCGAGGCGTGCGCCAGGGGGCTCGCGTGCGCGTCCCACAGGAATAA        <  3:24824/147‑1                                                                                                                                                        CGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCTGGCCAATCCCTCCTGTGCCAGGCGCGCGCGACCGCCTTGTTTGTACGACGCGATATCGAGGCGTGCGCCAGGGGGCTCGCGTGCGCGTCCCACAGGAATAACTGGC   <  5:321976/147‑1                                                                                                                                                         GCGGCGCTGCGCGGGTAAACCCGCTCCTACGGTTGTTTCTGGCCAATCCCTCCTGTGCCCGGCGCGCGCGACCGCCTTGTTTGGACGACGCGATATCGAGGCGTGCGCCAGGGGGCTCGCGTGCGCGTCCCACAGGAATAACTGGCC  <  3:102016/147‑1                                                                                                                                                                                                                                                                                                             TGTATAGGGCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4808027‑4808179 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gagatcgagcgccgcccgcgCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCTGGCCAATCCCTCCTGTGCCAGGCGCGCGCGACCGCCTTGTTTGTACGACGCGATATCGAGGCGTGCGCCAGGGGGCTCGCGTGCGCGTCCCACAGGAATAACTGGCC  <  NC_002947/5988949‑5988804

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.