New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4808179	2 (0.030)	16 (0.250)	13/238	2.4	47.3%	intergenic (‑288/‑267)	PP_4234/dsbD‑II	bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2
	?	NC_002947	= 5988949	34 (0.530)					intergenic (+243/‑303)	kefB‑III/PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA

GGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACAGGAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGC‑GCCCAAAAACTA‑T‑‑CGCCAGGCACCTGGAAGCCATCCTGCAATTTCCTGACGATCACCTCGCCGCCATGACGCGAACTCACAAAAACCATCACAAATCGTCTAATTCTCAGCTGGGTCCTA  >  NC_002947/5988804‑5989095                                                                                                                                                  |                                                                                                                                                       ggCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTCCAAACAAGGCGGTCGCGCGCGCCGGGCACAGGAGGGATTGGCCAGAAACAACCGTAGGAGCGGGTTTACCCGCGCAGCGCCGc                                                                                                                                                       <  3:102016‑M2/147‑2 (MQ=255)  gCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACAGGAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGcg                                                                                                                                                      <  5:321976‑M2/147‑3 (MQ=255)       ttATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACAGGAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGcgcgggc                                                                                                                                                 <  3:24824‑M2/147‑8 (MQ=255)          ttCCTGCGGGATTTGCGCGCGACCGCCTTGGGGCATGTCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGACTGGTGCAGGAGGGACTGGCC‑GAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGgcggcg                                                                                                                                             >  5:118604/1‑147 (MQ=14)             cTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACAGGAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGcgcgggcggcgc                                                                                                                                            >  3:325866‑M2/1‑134 (MQ=255)              tgtgGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACAGGAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGcgcgggcggcgctc                                                                                                                                          <  2:132541‑M2/147‑15 (MQ=255)               gtgGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACAGGAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGcgcgggcggcgctcga                                                                                                                                        <  7:158269‑M2/148‑17 (MQ=255)                   gACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACAGGAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGcgcgggcggcgctcgatct                                                                                                                                     <  8:255841‑M2/147‑20 (MQ=255)                     tttgcgcgcgACCGCCTTGGGGCATGTCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGACTGGTGCAGGAGGGACTGGTC‑GAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCa                                                                                                                                   >  7:124949/7‑146 (MQ=14)                       cgcACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACAGGAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATgg                                                                                                                                >  2:330244/1‑148 (MQ=255)                                    ccTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACAGGAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGC‑GCCCaaaaa                                                                                                                    >  5:282258/1‑146 (MQ=255)                                    ccTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACAGGAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGC‑GCCCaaaaa                                                                                                                    >  3:74108/1‑146 (MQ=255)                                    ccTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACAGGAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGC‑GCCCAAAAACt                                                                                                                  <  8:318597/148‑1 (MQ=255)                                             cGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACAGGAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGC‑GCCCAAAAACTA‑T‑‑CGACAg                                                                                                       >  6:50435/1‑147 (MQ=255)                                              gCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACAGGAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGC‑GCCCAAAAACTA‑T‑‑CGCCAGGc                                                                                                     <  7:255841/148‑1 (MQ=255)                                                cTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACAGGAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGC‑GCCCAAAAACTA‑T‑‑CGCCAGGCa                                                                                                    <  4:24824/147‑1 (MQ=255)                                                        cgcgTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACAGGAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGC‑GCCCAAAAACTA‑T‑‑CGCCAGGCACCt                                                                                                 >  3:198128/1‑142 (MQ=255)                                                        cgcgTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACAGGAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGC‑GCCCAAAAACTA‑T‑‑CGCCAGGCACCt                                                                                                 <  4:198128/142‑1 (MQ=255)                                                          cgtcgtACAAACAAGGCGGTCGCGCGCGACTGGTGCAGGAGGGACTGGCC‑GAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGcgcgggcggcgctcgatctcacaggcgctgaaaatcctccggcaaacacctcaaaattc                                                                                             <  7:92166‑M2/147‑60 (MQ=255)                                                           gtcgtACAAACAAGGCGGTCGCGCGCGCCTGGCACAGGAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCCTGGGC‑GCCCAAAAACTA‑T‑‑CGCCAGGCACCTGGAAGCCa                                                                                         >  6:417606/1‑147 (MQ=255)                                                                tgccccaaggcggTCGCGCGCAAATCCCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGcgcgggcggcgctcgatctcccaggcgctgtaactctcccggcgaacacctcccaggcgatgaa                                                                                        <  8:148564‑M2/142‑65 (MQ=255)                                                                   cccaaggCGGTCGCGCGCAAATCCCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGcgcgggcggcgctcgatctcccaggcgctgaaactctcccggcgaactcctcccaggcgctgaaaat                                                                                     >  3:273917‑M2/3‑80 (MQ=255)                                                                   cccaaggCGGTCGCGCGCAAATCCCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGcgcgggcggcgctcgatctcccaggcgctgaaactctcccggcgaacacctcccaggcgctgaaaatc                                                                                    <  1:232760‑M2/146‑69 (MQ=255)                                                                     caaGGCGGTCGCGCGCGCCTGGCACAGGAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGC‑GCGCAAAAACTA‑T‑‑CGCCGGGCACCTGGAAGCCATCCTGCAAtt                                                                               >  5:356335/1‑147 (MQ=255)                                                                     caaGGCGGTCGCGCGCAAATCCCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGcgcgggcggcgctcgatctcccaggcgctgaaactctcccggcgaacacctcccaggcgctgaaaatcc                                                                                   >  3:157942‑M2/1‑78 (MQ=255)                                                                          cGGTCGCGCGCGCCTGGCACAGGAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGC‑GCCCAAAAACTA‑T‑‑CGCCAGGCACCTGGAAGc                                                                                           <  7:291313/130‑1 (MQ=255)                                                                          cGGTCGCGCGCGCCTGGCACAGGAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGC‑GCCCAAAAACTA‑T‑‑CGCCAGGCACCTGGAAGc                                                                                           >  8:291313/1‑130 (MQ=255)                                                                          cGGTCGCGCGCGCCTGGCACAGGAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGC‑GCCCAAAAACTA‑T‑‑CGCCAGGCACCTGGAAGCCATCCTGCAATTTCCTg                                                                          <  6:321976/147‑1 (MQ=255)                                                                          cGGTCGCGCGCGCCTGGCACAGGAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGC‑GCCCAAAAACTA‑T‑‑CGCCAGGCACCTGGAAGCCATCCTGCAATTTCCTg                                                                          >  6:132133/1‑147 (MQ=255)                                                                          cGGTCGCGCGCGCCTGGCACAGGAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGC‑GCCCAAAAACTA‑T‑‑CGCCAGGCACCTGGAAGCCATCCTGCAATTTCCTGa                                                                         <  8:158269/148‑1 (MQ=255)                                                                                      ccTGGCACAGGAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGC‑GCCCAAAAACTA‑T‑‑CGCCAGGCACCTGGAAGCCATCCTGCAATTTCCTGACGATCACCTcg                                                              >  4:369708/1‑147 (MQ=255)                                                                                                 aggGATTGGCCAGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGC‑GCCCAAAAACTA‑T‑‑CGCCAGGCACCTGGAAGCCATCCTGCAATTTCCTGAc                                                                        <  4:348621/126‑1 (MQ=255)                                                                                                 aggGATTGGCCAGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGC‑GCCCAAAAACTA‑T‑‑CGCCAGGCACCTGGAAGCCATCCTGCAATTTCCTGAc                                                                        >  3:348621/1‑126 (MQ=255)                                                                                                 aggGATTGGCCAGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGC‑GCCCAAAAACTA‑T‑‑CGCCAGGCACCTGGAAGCCATCCTGCAATTTCCTGACGATCACCTCGCCGCCATGAcg                                                   >  4:126409/1‑147 (MQ=255)                                                                                                      ttGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGcgcgggcggcgctcgatctcccaggcgctgaaactctcccggcgaacacctcccaggcgctgaaaatcccccggccgaaacctcacaggagctgaaaacatc                                                  <  1:322379‑M2/147‑103 (MQ=255)                                                                                                          ccAGAAACAATCGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGC‑GCCCAAAAACTA‑T‑‑AGCCAGGCACATGGAAGCCATCCTGCAATTTCCTGCCGATCACCTAGCCGCCATGACGCGAACTca                                           >  3:272778/1‑146 (MQ=37)                                                                                                           ccgaaACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGcgcgggcggcgctcgatctcccaggcgctgaaactctcacggcgaacagctcccaggcgctcacatacccccggcccagacctccccggcgcagctatcctcccgcc                                             <  8:374587‑M2/145‑108 (MQ=255)                                                                                                            aGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGC‑GCCCAAAAACTA‑T‑‑CGCCAGGCACCTGGAAGCCATCCTGCAATTTCCTGACGATCACCTCGCCGCCATGACGCGAACTcaca                                         >  3:418861/1‑146 (MQ=255)                                                                                                             gAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGcgcgggcggcgctcgatctcccaggcgctgaaactctcccggcgaacacctcccaggcgctga                                                                                         <  7:170642‑M2/101‑64 (MQ=255)                                                                                                              aaacaaacGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGC‑GCCCAAAAACTA‑T‑‑CGCCAGGCACCTGGAAGCCATCCTGCAATTTCCTGACGATCACCTCGCCGCCATGACGCGAACTCACaaaa                                      <  5:132133/147‑1 (MQ=255)                                                                                                               aacaaacGTAGGAGCGGGTTTACCCGCGAAGCGCCGcgcgggcggcgctcgatctcccaggcgctgaaactctcccggcgaacacctcccaggcgctgaacctcccccggccaacacctcccaggcactgaaacactaccgccaatc                                         <  4:178709‑M2/147‑112 (MQ=255)                                                                                                                 caaacGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGC‑GCCCAAAAACTA‑T‑‑CGCCAGGCACCTGGAAGCCATCCTGCAATTTCCTGACGATCACCTCGCCGCCATGACGCGAACTCACAAAAACCa                                  <  1:330244/148‑1 (MQ=255)                                                                                                                  aaacGTAGGATGGGGTTTACCCGGGAATGGCCGCGCGGGCGGGGCTCGATCTAATGGGCAGCCCAAAAACTACTAAAGCCAGGCACCTGGAAGCCATCCTGCAATTTCCTGACGATCACCTCGCCGCCATGACGCGAACTCACaaaaa                                     <  1:132541/148‑1 (MQ=255)                                                                                                                    acGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGC‑GCCCAAAAACTA‑T‑‑CGCCAGGCACCTGGAAGCCATCCTGCAATTTCCTGACGATCACCTCGCCGCCATGACGCGAACTCACAAAAACCATc                                <  3:369708/147‑1 (MQ=255)                                                                                                                       tAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGC‑GCCCAAAAACTA‑T‑‑CGCCAGGCACCTGGAAGCCATCCTGCAATTTCCTGACGATCACCTCGCCGCCATGACGCGAACTCACAAAAACCATcaca                             >  8:270569/1‑147 (MQ=255)                                                                                                                        aGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGC‑GCCCAAAAACTA‑T‑‑CGCCAGGCACCTGGAAGCCATCCTGCAATTTCCTGACGATCACCTCGCCGCCATGACGCGAACTCACAAAAACCATCACaa                            >  5:36378/1‑147 (MQ=255)                                                                                                                         ggAGCGGGTTTACCCGCGAAGCGCCGcgcgggcggcgctcgatctcccaggcgctgaaactctcccggcgaacacctcccaggcgctgaaaaacaaccggcgaacacctaccaggcgaggcactcctgccgccaaacacctacacg                                <  6:360690‑M2/146‑121 (MQ=255)                                                                                                                          gAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGC‑GCCCAAAAACTA‑T‑‑CGCCAGGCACCTGGAAGCCATCCTGCAATTTCCTGACGATCACCTCGCCGCCATGACGCGAACTCACAAAAACCATCACAAAt                          <  3:126409/147‑1 (MQ=255)                                                                                                                               ggTTTACCCGCGAAGCGCCGcgcgggcggcgctcgatctcccaggcgctgaaactctcccggcgaacacctccccggcgctgaaaatccaccggcgaaaacctaccaggctctgaaagcctcgcgccaaacacctacccgccaaagcg                        <  1:344514‑M2/148‑129 (MQ=255)                                                                                                                                       cgcgAAGCGCCGcgcgggcggcgctcgttctcccaggcgctgaaactctcccggcgaacacctcccaggcgctgaaaatcccccgg                                                                              >  2:146877‑M2/1‑12 (MQ=255)                                                                                                                                       cgcgAAGCGCCGcgcgggcggcgctcgttctcccaggcgctgaaactctcccggcgaacacctcccaggcgctgaaaatcccccgg                                                                              <  1:146877‑M2/86‑75 (MQ=255)                                                                                                                                        gcgAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGC‑GCCCAAAAACTA‑T‑‑CGCCAGGCACCTGGAAGCCATCCTGCAAttt                                                                              <  7:269734/81‑1 (MQ=255)                                                                                                                                        gcgAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGC‑GCCCAAAAACTA‑T‑‑CGCCAGGCACCTGGAAGCCATCCTGCAAttt                                                                              >  8:269734/1‑81 (MQ=255)                                                                                                                                         cgAAGCGCCGcgcgggcggcgctcgatctcccaggcgctgaaactctcccggcgaacacctcccagtcgctgaaaatcccccggcgaacacctcccaggcgctgaaaacctcccgccaaacacctacccgccaaagcgcgaattccg               >  3:392053‑M2/1‑10 (MQ=255)                                                                                                                                         cgAAGCGCCGcgcgggcggcgctcgatctcccaggcgctgaaactctcccggcgaacacctcccaggcgctgaaaatcccccggcgagcacctcccaggcgctgaaaccctcccgccaaacacctacccgccaaagcgcgaattccg               <  5:92644‑M2/147‑138 (MQ=255)                                                                                                                                         cgAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGC‑GCCCAAAAACTA‑T‑‑CGCCGGGCACCTGGAAGCCATCCTGCAATTTCCTGACGATCACCTCGCCGCCATGACGCGAACTCACAAAAACCATCACAAATCGTCTAATTCTCAGc           <  6:356335/147‑1 (MQ=255)                                                                                                                                                 cgcgcgggcggcgctcgatctcccagccgctgacaccctcgcggcgtccacctcccaggcgctgaaactcccccggcgaacacctcccaggcgctgaaaacctcccgccaaacacctacccgccaaagcgcgaattccgcccattgc       >  5:360690‑M2/1‑2 (MQ=255)                                                                                                                                                 cgcgcgGGCGGCGCTCGATCTCATGGGC‑GCCCAAAAACTA‑T‑‑CGCCAGGCACCTGGAAGCCATCCTGCAATTTCCTGACGATCACCTCGCCGCCATGACGCGAACTCACAAAAACCATCACAAATCGTCTAATTCTCAGCTGGGTCCTa  >  2:76784/1‑148 (MQ=255)                                                                                                                                                  |                                                                                                                                                       GGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACAGGAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGC‑GCCCAAAAACTA‑T‑‑CGCCAGGCACCTGGAAGCCATCCTGCAATTTCCTGACGATCACCTCGCCGCCATGACGCGAACTCACAAAAACCATCACAAATCGTCTAATTCTCAGCTGGGTCCTA  >  NC_002947/5988804‑5989095

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.