New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3078702	50 (0.790)	3 (0.050)	3/252	NT	6.4%	coding (564/1410 nt)	PP_2688	hypothetical protein
	?	NC_002947	= 3078728	40 (0.660)					coding (538/1410 nt)	PP_2688	hypothetical protein

GCCCATTTCCCGGGCCAGGAAGGCATGCTCGAAATAGGCGCTGTTGAAACGGCCGGGCGTGAGCAGCACCGCGGTGGGGTTGTCCAGTGGGCTGGCGCTCTTGAGCGTGTCCAGCAGCAGGTTGGGGTAGTGATCGATGGG‑CGCGATGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3078552‑3078702 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatgcgcCTGTTCCCCGAACTGTTTGCCGCCCAGCGCATCGCGCCCATCGATCACTACCCCAACCTGCTGCTGGACACGCTCAAGAGCGCCAGCCCACTGGACAACCCCACCGCGGTGCTGCTCACGCCCGGCCGTTTCAACAGCGCCTATTTC  <  NC_002947/3078728‑3078582                                                                                                                                                                                                                                                                                                             GCCCATTTCCCGGGCCAGGAAGGCATGCTCGAAATAGGCGCTGTTGAAACGGCCGGGCGTGAGCAGCACCGCGGTGGGGTTGTCCAGTGGGCTGGCGCTCTTGAGCGTGTCCAGCAGCAGGTTGGCGTAGTGATCTATGGG‑CGCGATGC                                                                                                                                                       >  4:200118/1‑149  CCCATTTCCCGGGCCAGGAAGGCAAGCTCGAAATAGGCGCTGTTGAAACGGCCGGGCGTGAGCAGCACCGCGGTGGGGTTGTCCAGTGGGCTGGCGCTCTTGAGCGTGTCCAGCAGCAGGTTGGGGTAGTGATCGATGGG‑CGCGATGCG                                                                                                                                                      >  6:15686/1‑149   CCATTTCCCGGGCCAGGAAGGCATGCTCGAAATAGGCGCTGTTGAAACGGCCGGGCGTGAGCAGCACCGCGGTGGGGTTGTCCAGTGGGCTGGCGCTCTTGAGCGTGTCCAGCAGCAGGTTGGGGTAGTGATCGATGGG‑CGCGATGCGC                                                                                                                                                     >  4:3623/1‑149   CCATTTCCCGGGCCAGGAAGGCATGCTCGAAATAGGCGCTGTTGAAACGGCCGGGCGTGAGCAGCACCGCGGTGGGGTTGTCCAGTGGGCTGGCGCTCTTGAGCGTGTCCAGCAGCAGGTTGGGGTAGTGATCGATGGG‑CGCGATGCGC                                                                                                                                                     >  6:161909/1‑149                                      ccgttcTTGTAACGGCCGGGCGTGAGCAGCACCGCGGTGGGGTTGTCCAGTGGGCTGGCGCTCTTGAGCGTGTCCAGCAGCAGTTTGGGGTAGTGATCGATGGGCCGCGATGCGCCTGTTCCCCGAACTGTTTGCCGCCCAGCGCATC                                                                                                                    <  1:75846/142‑1                                         CTGTTGAAACGGCCGGGCGTGAGCAGCACCGCGGTGGGGTTGTCCAGTGGGCTGGCGCTCTTGAGCGTGTCCAGCAGCAGGTTGGGGTAGTGATCGATGGG‑CGCGATGCGCCTGTTCCCCGAACTGTTTGCCGCCCAGCGCATCGCGCC                                                                                                               <  5:161909/149‑1                                              GAAACGGCCGGGCGTGAGCAGCACCGCGGTGGGGTTGTCCAGTGGGCTGGCGCTCTTGAGCGTGTCCAGCAGCAGGTTGGGGTAGTGATCGATGGG‑CGCGATGCGCCTGTTCCCCGAACTGTTTGCCGCCCAGCGCATC                                                                                                                    >  2:75846/1‑139                                                                                                                                                  GATGCGCCTGTTCCCCGAACTGTTTGCCGCCCAGCGCATCGCGCCCATCGATCACTACCCCAACCTGCTGCTGGACACGCTCAAGAGCGCCAGCCCACTGGACACCCCCACCGCGGTGCTGCTCACGCCCGGCCGTTTCAACAGCGCC        >  2:127479/1‑148                                                                                                                                                       GCCTGTTCCCCGAACTGTTTGCCGCCCAGCGCATCGCGCCCATCGATCACTACCCCAACCTGCTGCTGGACACGCTCAAGAGCGCCAGCCCACTGGACAACCCCACCGCGGTGCTGCTCACGCCCGGCCGTTTCAACAGCGCCTATTTC  >  5:266993/1‑149                                                                                                                                                       GCCTGTTCCCCGAACTGTTTGCCGCCCAGCGCATCGCGCCCATCGATCACTACCCCAACCTGCTGCTGGACACGCTCAAGAGCGCCAGCCCACTGGACAACCCCACCGCGGTGCTGCTCACGCCCGGCCGTTTCAACAGCGCCTATTTC  <  7:347805/149‑1                                                                                                                                                                                                                                                                                                             GCCCATTTCCCGGGCCAGGAAGGCATGCTCGAAATAGGCGCTGTTGAAACGGCCGGGCGTGAGCAGCACCGCGGTGGGGTTGTCCAGTGGGCTGGCGCTCTTGAGCGTGTCCAGCAGCAGGTTGGGGTAGTGATCGATGGG‑CGCGATGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3078552‑3078702 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatgcgcCTGTTCCCCGAACTGTTTGCCGCCCAGCGCATCGCGCCCATCGATCACTACCCCAACCTGCTGCTGGACACGCTCAAGAGCGCCAGCCCACTGGACAACCCCACCGCGGTGCTGCTCACGCCCGGCCGTTTCAACAGCGCCTATTTC  <  NC_002947/3078728‑3078582

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.