New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3078702	50 (0.790)	3 (0.050)	3/252	NT	6.4%	coding (564/1410 nt)	PP_2688	hypothetical protein
	?	NC_002947	= 3078728	40 (0.660)					coding (538/1410 nt)	PP_2688	hypothetical protein

GAAATAGGCGCTGTTGAAACGGCCGGGCGTGAGCAGCACCGCGGTGGGGTTGTCCAGTGGGCTGGCGCTCTTGAGCGTGTCCAGCAGCAGGTTGGGGTAGTGATCGATGGGCGCGATGCGCTGGGCGGCAAACAGTTCGGGGAACAGGCGCATCATCATCTTGCGGTCTTCGAGCATGTAGCTGACGCCGCTGGGGGTGCGCAGGTTGTCTTCCAGCACGAAGTAGCTGCCATCGCCGTCACGTACCAGATCGACACCGGCAATATGCGCATACAGCCCACGGTGAAGGTCCAGG  >  NC_002947/3078582‑3078876                                                                                                                                                   |                                                                                                                                                     gAAATAGGCGCTGTTGAAACGGCCGGGCGTGAGCAGCACCGCGGTGGGGTTGTCCAGTGGGCTGGCGCTCTTGAGCGTGTCCAGCAGCAGGTTGGGGTAGTGATCGATGGGCGCGATGCGCTGGGCGGCAAACAGTTCGGGGAACAGgc                                                                                                                                                    >  5:266993‑M2/1‑147 (MQ=255) gAAATAGGCGCTGTTGAAACGGCCGGGCGTGAGCAGCACCGCGGTGGGGTTGTCCAGTGGGCTGGCGCTCTTGAGCGTGTCCAGCAGCAGGTTGGGGTAGTGATCGATGGGCGCGATGCGCTGGGCGGCAAACAGTTCGGGGAACAGgc                                                                                                                                                    <  7:347805‑M2/149‑3 (MQ=255)       ggCGCTGTTGAAACGGCCGGGCGTGAGCAGCACCGCGGTGGGGGTGTCCAGTGGGCTGGCGCTCTTGAGCGTGTCCAGCAGCAGGTTGGGGTAGTGATCGATGGGCGCGATGCGCTGGGCGGCAAACAGTTCGGGGAACAGgcgcatc                                                                                                                                               >  2:127479‑M2/1‑141 (MQ=255)         cgcTGTTGAAACGGCCGGGCGTGAGCAGCACCGCGGTGGGGTTGTCCAGTGGGCTGGCGCTCTTGAGCGTGTCCAGCAGCAGGTTGGGGTAGTGATCGATTGGCGCGATGCGCTGGGCGGCAAACAGTTCGGGGAACAGGCGcatcatc                                                                                                                                            <  1:92262/149‑1 (MQ=255)                gAAACGGCCGGGCGTGAGCAGCACCGCGGTGGGGTTGTCCAGTGGGCTGGCGCTCTTGAGCGTGTCCAGCAGCAGGTTGGGGTAGTGATCGATGGGCGCGATGCGCTGGGCGGCAAACAGTTCGGGGAACAg                                                                                                                                                      <  1:125758/132‑1 (MQ=255)                gAAACGGCCGGGCGTGAGCAGCACCGCGGTGGGGTTGTCCAGTGGGCTGGCGCTCTTGAGCGTGTCCAGCAGCAGGTTGGGGTAGTGATCGATGGGCGCGATGCGCTGGGCGGCAAACAGTTCGGGGAACAg                                                                                                                                                      >  2:125758/1‑132 (MQ=255)                  aaCGGCCGGGCGTGAGCAGCACCGCGGTGGGGTTGTCCAGTGGGCTGGCGCTCTTGAGCGTGTCCAGCAGCAGGTTGGGGTAGTGATCGATGGGCGCGATGCGCTGGGCGGCAAACAGTTCGGGGAACAGGCGCATCATCATCTTGCgg                                                                                                                                   >  4:32326/1‑149 (MQ=255)                  aaCGGCCGGGCGTGAGCAGCACCGCGGTGGGGTTGTCCAGTGGGCTGGCGCTCTTGAGCGTGTCCAGCAGCAGGTTGGGGTAGTGATCGATGGGCGCGATGCGCTGGGCGGCAAACAGTTCGGGGAACAGGCGCATCATCATCTTGCgg                                                                                                                                   >  2:119991/1‑149 (MQ=255)                       ccGGGCGTGAGCAGCACCGCGGTGGGGTTGTCCAGTGGGCTGGCGCTCTTGAGCGTGTCCAGCAGCAGGTTGGGGTAGTGATCGATGGGCGCGATGCGCTGGGCGGCAAACAGTTCGGGGAACAGGCGCATCATCATCTTGCGGTCTTc                                                                                                                              <  6:130441/149‑1 (MQ=255)                       ccGGGCGTGAGCAGCACCGCGGTGGGGTTGTCCAGTGGGCTGGCGCTCTTGAGCGTGTCCAGCAGCAGGTTGGGGTAGTGATCGATGGGCGCGATGCGCTGGGCGGCAAACAGTTCGGGGAACAGGCGCATCATCATCTTGCGGTCTTc                                                                                                                              <  5:366055/149‑1 (MQ=255)                         gggCGTGAGCAGCACCGCGGTGGGGTTGTCCAGTGGGCTGGCGCTCTTGAGCGTGTCCAGCAGCTGGTTGGGGTAGTGATCGATGGGCGGGATGCGCTGGGCGGCAAACAGTTCGGGGAACAGGCGCATCATCATCTTGCGGTCTTCGa                                                                                                                            <  5:15686/149‑1 (MQ=255)                               gcgcagcaCCGCGGTGGGGTTGTCCAGTGGGCTGGCGCTCTTGAGCGTGTCCAGCAGCAGGTTGGGGTAGTGATCGATGGGCGCGATGCGCTGGGCGGCAAACAGTTCGGGGAACAGGCGCATCATCATCTTGCGGTCTTCGAGCATGt                                                                                                                      <  1:141511/147‑1 (MQ=255)                               gAGCAGCACCGCGGTGGGGTTGTCCAGTGGGCTGGCGCTCTTGAGCGTGTCCAGCAGCAGGTTGGGGTAGTGATCGATGGGCGCGATGCGCTGGGCGGCAAACAGTTCGGGGAACAGGCGCATCATCATCTTGCGGTCTTCGAGCATg                                                                                                                       >  2:21731/1‑148 (MQ=255)                                agcagcACCGCGGTGGGGTTGTCCAGTGGGCTGGCGCTCTTGAGCGTGTCCAGCAGCAGGTTGGGGTAGTGATCGATGGGCGCGATGCGCTGGGCGGCAAACAGTTCGGGGAACAGGCGCATCATCATCTTGCGGTCTTCGAGCATGt                                                                                                                      <  1:328145/148‑1 (MQ=255)                                     caCCGCGGTGGGGTTGTCAAGTGGGCTGGCGCTCTTGAGCGTGTCCAGCAGCAGGTTGGGGTAGTGATCGATGGGCGCGATGCGCTGGGCGGCAAACAGTTCGGGGAACAGGCGCATCATCATCATGCGGTCTTCGAGCATGTAGCTGa                                                                                                                >  6:274298/1‑149 (MQ=255)                                               gggTTGTCCAGTGGGCTGGCGCTCTTGAGCGTGTCCAGCAGCAGGTTGGGGTAGTGATCGATGGGCGCGATGCGCTGGGCGGCAAACAGTTCGGGGAACAGGCGCATCATCATCTTGCGGTCTTCGAGCATGTAGCTGACGCCGCTggg                                                                                                      >  6:386650/1‑149 (MQ=255)                                               gggTTGTCCAGTGGGCTGGCGCTCTTGAGCGTGTCCAGCAGCAGGTTGGGGTAGTGATCGATGGGCGCGATGCGCTGGGCGGCAAACAGTTCGGGGAACAGGCGCATCATCATCTTGCGGTCTTCGAGCATGTAGCTGACGCCGCTggg                                                                                                      >  5:36027/1‑149 (MQ=255)                                                 gTTGTCCAGTGGGCTGGCGCTCTTGAGCGTGTCCAGCAGCAGGTTGGGGTAGTGATCGATGGGCGCGATGCGCTGGGCGGCAAACAGTTCGGGGAACAGGCGCATCATCATCTTGCGGTCTTCGAGCATGTAGCTGACGCCGCTggggg                                                                                                    >  8:143484/1‑149 (MQ=255)                                                  ttGTCCAGTGGGCTGGCGCTCTTGAGCGTGTCCAGCAGCAGGTTGGGGTAGTGATCGATGGGCGCGATGCGCTGGGCGGCAAACAGTTCGGGGAACAGGCGCATCATCATCTTGCGGTCTTCGAGCATGTAGCTGACGCCGCTGGGGGt                                                                                                   >  2:27439/1‑149 (MQ=255)                                                  ttGTCCAGTGGGCTGGCGCTCTTGAGCGTGTCCAGCAGCAGGTTGGGGTAGTGATCGATGGGCGCGATGCGCTGGGCGGCAAACAGTTCGGGGAACAGGCGCATCATCATCTTGCGGTCTTCGAGCATGTAGCTGACGCCGCTGGGGGt                                                                                                   <  1:212458/149‑1 (MQ=255)                                                    gTCCAGTGGGCTGGCGCTCTTGAGCGTGTCCAGCAGCAGGTTGGGGTAGTGATCGATGGGCGCGATGCGCTGGGCGGCAAACAGTTCGGGGAACAGGCGCATCATCATCTTGCGGACTTCGAGCATGTAGCTGACGCCGCTGGGGGt                                                                                                   >  8:183043/1‑147 (MQ=255)                                                         gTGGGCTGGCGCTCTTGAGCGTGTCCAGCAGCAGGTTGGGGTAGTGATCGATGGGCGCGATGCGCTGGGCGGCAAACAGTTCGGGGAACAGGCGCATCATCATCTTGCGGTCTTCGAGCATGTAGCTGACGCCGCTGGGGGTGCGCAgg                                                                                            >  4:45733/1‑149 (MQ=255)                                                           gggCTGGCGCTCTTGAGCGTGTCCAGCAGCAGGTTGGGGTAGTGATCGATGGGCGCGATGCGCTGGGCGGCAAACAGTTCGGGGAACAGGCGCATCATCATCTTGCGGTCTTCGAGCATGTAGCTGACGCCGCTGGGGGTGCGCAGGtt                                                                                          <  4:36256/149‑1 (MQ=255)                                                                     tctTGAGCGTGTCCAGCAGCAGGTTGGGGTAGTGATCGATGGGCGCGATGCGCTGGGCGGCAAACAGTTCGGGGAACAGGCGCATCATCATCTTGCGGTCTTCGAGCATGTAGCTGACGCCGCTGGGGGTGCGCAGGTTGTCTTCCAg                                                                                 >  8:143769/1‑148 (MQ=255)                                                                       ttGAGCGTGTCCAGCAGCAGGTTGGGGTAGTGATCGATGGGCGCGATGCGCTGGGCGGCAAACAGTTCGGGGAACAGGCTCATCATCATCTTGCGGTCTTCGAGCATGTAGCTGACGCCGCTGGGGGTGCGCAGGTTGACTTCCAGCa                                                                               >  7:5836/1‑148 (MQ=255)                                                                         gAGCGTGTCCAGCAGCAGGTTGGGGTAGTGATCGATGGGCGCGATGCGCTGGGCGGCAAACAGTTCGGGGAACAGGCGCATCATCATCTTGCGGTCTTCGAGCATGTAGCTGACGCCGCTGGGGGTGCGCAGGTTGTCTTCCAGCa                                                                               <  5:386650/146‑1 (MQ=255)                                                                         gAGCGTGTCCAGCAGCAGGTTGGGGTAGTGATCGATGGGCGCGATGCGCTGGGCGGCAAACAGTTCGGGGAACAGGAGCATCATCATCTTGCGGGCTTCGAGCATGTAGCTGACGCCGCTGGGGGTGCGCAGGTTGTCTTCCAGCa                                                                               <  6:182845/146‑1 (MQ=255)                                                                           gCGTGTCCAGCCGCAGGGTGGGGTAGTGATCGATGGGCGCGATGCGCTGGGCGGCAAACAGTTCGGGGAACAGGCGCATCATCATCTTGCGGTCTTCGAGCATGTAGCTGACGCCGCTGGGGGTGCGCAGGTTGTCTTCCAGCACGAAg                                                                          >  6:161176/1‑149 (MQ=255)                                                                            ggtggCCAGGAGCAGGGTGGGGTAGTGATCGATGGGCGCGATGCGGTGGGCGGCAAAGAGTTCGGGGACCAGGCGGATCATCATCTTGCGGTCTTCGAGCATGTAGCTGACGCCGCTGGGGGTGCGCAGGTTGTCTTCCAGCACGAAGt                                                                         <  3:200118/148‑1 (MQ=255)                                                                             gtgtCCAGCAGCAGGTTGGGGTAGTGATCGATGGGCGCGATGCGCTGGGCGGCAAACAGTTCGGGGAACAGGCGCATCATCATCTTGCGGTCTTCGAGCATGTAGCTGACGCCGCTGGGGGTGCGCAGGTTGTCTTCCAGCACGAAGTa                                                                        <  3:45733/149‑1 (MQ=255)                                                                              tgtCCAGCAGCAGGTTGGGGTAGTGATCGATGGGCGCGATGCGCTGGGCGGCAAACAGTTCGGGGAACAGGCGCATCATCATCTTGCGGTCTTCGAGCATGTAGCTGACGCCGCTGGGGGTGCGCAGGTTGTCTTCCAGCACGAAGTAg                                                                       >  2:115160/1‑149 (MQ=255)                                                                              tgtCCAGCAGCAGGTTGGGGTAGTGATCGATGGGCGCGATGCGCTGGGCGGCAAACAGTTCGGGGAACAGGCGCATCATCATCTTGCGGTCTTCGAGCATGTAGCTGACGCCGCTGGGGGTGCGCAGGTTGTCTTCCAGCACGAAGTAg                                                                       <  1:115160/149‑1 (MQ=255)                                                                                tCCAGCAGCAGGTTGGGGTAGTGATCGATGGGCGCGATGCGCTGGGCGGCAAACAGTTCGGGGAACAGGCGCATCATCATCTTGCGGTCTTCGAGCATGTAGCTGACGCCGCTGGGGGTGCGCAGGTTGTCTTCCAGCACGAAGTAGCt                                                                     <  6:36027/149‑1 (MQ=255)                                                                                 ccAGCAGCAGGTTGGTGTAGTGATCGATGGGCGCGATGCGCTGGGCGGCAAACAGTTCGGGGAACAGGCGCATCATCATCTTGCGGTCTTCGAGCATGTAGCTGACGCCGCTGGGGGTGCGCAGGTTGTCTTCCAGCACGAAGTAGCTg                                                                    <  3:32326/149‑1 (MQ=255)                                                                                    gcagcagGTTGGGGTAGTGATCGATGGGCGCGATGCGCTGGGCGGCAAACAGTTCGGGGAACAGGCGCATCATCATCTTGCGGTCTTCGAGCATGTAGCTGACGCCGCTGGGGGTGCGCAGGTTGTCTTCCAGCACGAAGTAGCTGCCa                                                                 <  1:119991/149‑1 (MQ=255)                                                                                      agcagGTTGGGGTAGTGATCGATGGGCGCGATGCGCTGGGCGGCAAACAGTTCGGGGAACAGGCGCATCATCATCTTGCGGACTTCGAGCATGTAGCTGACGCCGCTGGGGGTGCGCAGGTTGTCTTCCAGCACGAAGTAGCTGCCATc                                                               <  7:183043/149‑1 (MQ=255)                                                                                       gcagGTTGGGGTAGTGATCGATGGGCGCGATGCGCTGGGCGGCAAACAGTTCGGGGAACAGGCGCATCATCATCTTGCGGTCTTCTAGCATGTAGCTGACGCCGCTGGGGGTGCGCAGGTTGTCTTCCAGCACGAAGTAGCTGCCATCg                                                              <  3:374620/149‑1 (MQ=255)                                                                                       gcagGTTGGGGTAGTGATCGATGGGCGCGATGCGCTGGGCGGCAAACAGTTCGGGGAACAGGCGCATCATCATCTTGCGGTCTTCGAGCATGTAGCTGACGCCGCTGGGGGTGCGCAGGTTGTCTTCCAGCACGAAGTAGCTGCCATCg                                                              <  7:143484/149‑1 (MQ=255)                                                                                                        tCGATGGGCGCGATGCGCTGGGCGGCAAACAGTTCGGGGAACAGGCGCATCATCATCTTGCGGTCTTCGAGCATGTAGCTGACGCCGCTGGGGGTGCGCAGGTTGTCTTCCAGCACGAAGTAGCTGCCATCGCCGTCACGTACCAGATc                                             <  1:27439/149‑1 (MQ=255)                                                                                                           aTGGGCGCGATGCGCTGGGCGGCAAACAGTTCGGGGAACAGGCGCATCATCATCTTGCGGTCTTCGAGCATGTAGCTGACGCCGCTGGGGGTGCGCAGGTTGTCTTCCAGCACGAAGTAGCTGCCATCGCCGTCACGTACCAGATCGa                                           >  8:9967/1‑148 (MQ=255)                                                                                                              ggCGCGATGCGCTGGGCGGCAAACAGTTCGGGGAACAGgcgcatcgcgcccatcgatcactaccccaacctgctgctggacacgctcaagagcgccagcccactggacaaccccaccgcggtgctgctcacgcccggccgtttcaacag                                       <  5:161909‑M2/149‑112 (MQ=255)                                                                                                                   gATGCGCTGGGCGGCAAACAGTTCGGGGAACAGgcgcatcgcggcccatcgatcactaccccaaactgctgctggacacgctcaagagcgccagcccactggacaaccccaccgcggtgctgctcacgcccggccgttacaagaacgg                                   <  1:75846‑M2/148‑116 (MQ=255)                                                                                                                   gATGCGCTGGGCGGCAAACAGTTCGGGGAACAGgcgcatcgcgcccatcgatcactaccccaacctgctgctggacacgctcaagagcgccagcccactggacaaccccaccgcggtgctgctcacgcccggccgtttc                                            >  2:75846‑M2/1‑33 (MQ=255)                                                                                                                       cgcTGGGCGGCAAACAGTTCGGGGAACAGGCGCATCATCATCTTGCGGTCTTCGAGCATGTAGCTGACGCCGCTGGGGGTGCGCAGGTTGTCTTCCAGCACGAAGTAGCTGCCATCGCCGTCACGTACCAGATCGACACCGGCAATATg                              <  7:9967/149‑1 (MQ=255)                                                                                                                                gcAAACAGTTCGGGGAACAGGCGCATCATCATCTTGCGGTCTTCGAGCATGTAGCTGACGCCGCTGGGGGTGCGCAGGTTGTCTTCCAGCACGAAGTAGCTGCCATCGCCGTCACGTACCAGATCGACACCGGCAATATGCGCATACAg                     >  5:1629/1‑149 (MQ=255)                                                                                                                                    aCAGTTCGGGGAACAGGCGCATCATCATCTTGCGGTCTTCGAGCATGTAGCTGACGCCGCTGGGGGTGCGCAGGTTGTCTTCCAGCACGAAGTAGCTGCCATCGCCGTCACGTACCAGATCGACACCGGCAATATGCGCATACAGCCCa                 >  7:212933/1‑149 (MQ=255)                                                                                                                                     cAGTTCGGGCAACAGGCGCAGCATCATCTTGCGGTCTTCGAGCATGTAGCTGACGCCGCTGGGGGTGCGCAGGTTGTCTTCCAGCACGAAGTAGCTGCCATCGCCGTCACGTACCAGATCGACACCGGCAATATGCGCATACAGCCCAc                <  8:347805/149‑1 (MQ=255)                                                                                                                                      aGTTCGGGGAACAGGCGCATCATCATCTTGCGGTCTTCGAGCATGTAGCTGACGCCGCTGGGGGTGCGCAGGTTGTCTTCCAGCACGAAGTAGCTGCCATCGCCGTCACGTACCAGATCGACACCGGCAATATGCGCATACAGCCCACg               <  8:212933/149‑1 (MQ=255)                                                                                                                                           ggggAACAGGCGCATCATAATCTTGCGGTATTCGAGCATGTAGCTGACTCCACTGGGTGTGCGCAGGTTTTATTCCAGCACGAAGTAGCTGCCATAGCCGTCACGTACCAGATCGACACCGGCAATATGCGCATACAGCCCACGGTTaa          <  2:324823/149‑1 (MQ=255)                                                                                                                                                  aGGCGCATCATCATCTTGCGGTCTTCGAGCATGTAGCTGACGCCGCTGGGGGTGCGCAGGTTGTCTTCCAGCACGAAGTAGCTGCCATCGCCGTCACGTACCAGATCTACACCGGCAATATGCGCATACAGCCCACGGTGAAGGTCCAg   >  4:359559/1‑149 (MQ=255)                                                                                                                                                  aGGCGCATCATCATCTTGCGGTCTTCGAGCATGTAGCTGACGCCGCTGGGGGTGCGCAGGTTGTCTTCCAGCACGAAGTAGCTGCCATCGCCGTCACGTACCAGATCGACACCGGCAATATGCGCATACAGCCCACGGTGAAGGTCCAg   >  8:204656/1‑149 (MQ=255)                                                                                                                                                   ggCGCATCATCATCTTGCGGTCTTCGAGCATGTAGCTGACGCCGCTGGGGGTGCGCAGGTTGTCTTCCAGCACGAAGTAGCTGCCATCGCCGTCACGTACCAGATCGACACCGGCAATATGCGCATACAGCCCACGGTGAAGGTCCAgg  <  6:1629/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                     GAAATAGGCGCTGTTGAAACGGCCGGGCGTGAGCAGCACCGCGGTGGGGTTGTCCAGTGGGCTGGCGCTCTTGAGCGTGTCCAGCAGCAGGTTGGGGTAGTGATCGATGGGCGCGATGCGCTGGGCGGCAAACAGTTCGGGGAACAGGCGCATCATCATCTTGCGGTCTTCGAGCATGTAGCTGACGCCGCTGGGGGTGCGCAGGTTGTCTTCCAGCACGAAGTAGCTGCCATCGCCGTCACGTACCAGATCGACACCGGCAATATGCGCATACAGCCCACGGTGAAGGTCCAGG  >  NC_002947/3078582‑3078876

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.