New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3214219 =	44 (0.690)	3 (0.050)	3/254	NT	6.2%	coding (134/3129 nt)	mexD	multidrug RND transporter MexD
	?	NC_002947	3214270 =	48 (0.790)					coding (185/3129 nt)	mexD	multidrug RND transporter MexD

CTCGAAGGTCACCATCACTTCGGCCACGCCGTTGGAGTTGTTGGTGGACTCGTAGTACAGCAGGCCCTTGGCGCCGTTGAGCGACTGTTCGATGATGCTGGTCACCGACTCCACCATGACCTTGGCCGAAGCGCCGGGGTAGGAGGCGGTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3214370‑3214219 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggtgaCCAGCATCATCGAACAGTCGCTCAACGGCGCCAAGGGCCTGCTGTACTACGAGTCCACCAACAACTCCAACGGCGTGGCCGAAGTGATGGTGACCTTCGAGCCAGGCACCGACCCGGACATGGCGCAGGTCGACGTGCAGAACCGTTT  >  NC_002947/3214270‑3214417                                                                                                                                                                                                                                                                                                              CTCGAAGGTCACCATCACTTCGGCCACGCCGTTGGAGTTGTTGGTGGACTCGTAGTACAGCAGGCCCTTGGCGCCGTTGAGCGACTGTTCGATGATGCTGGTCACCGACTCCACCATGACCTTGGCCGAAGCGCCGGGGTAGGAGGCGG                                                                                                                                                         <  7:177164/149‑1  TCGAAGGTCACCATCACTTCGGCCACGCCGTTGGAGTTGTTGGTGGACTCGTAGTACAGCAGGCCCTTGGCGCCGTTGAGCGACTGTTCGATGATGCTGGTCACCGACTCCACCATGACCTTGGCCGAAGCGCCGGGGTAGGAGGCGGT                                                                                                                                                        >  6:25726/1‑149                                                                                                      TCACCGACTCCACCATGACCTTGGCCGAAGCGCCGGGGTAGGAGGCGGTGACCAGCATCATCGAACAGTCGCTCAACGGCGCCAAGGGCCTGCTGTA                                                                                                        <  5:71439/97‑1                                                                                                      TCACCGACTCCACCATGACCTTGGCCGAAGCGCCGGGGTAGGAGGCGGTGACCAGCATCATCGAACAGTCGCTCAACGGCGCCAAGGGCCTGCTGTA                                                                                                        >  6:71439/1‑97                                                                                                        ACCGACTCCACCATGACCTTGGCCGAAGCGCCGGGGTAGGAGGCGGTGACCAGCATCATCGAACAGTCGCTCAACGGCGCCAAGGGCCTGCTGTACTACGAGTCCACCAACAACTCCAACGGCGTGGCCGAAGTGATGGTGACCTTC                                                    >  8:22797/1‑147                                                                                                                                                        ACCAGCATCATCGAACAGTCGCTCAACGGCGCCAAGGGCCTGCTGTACTACGAGTCCACCAACAACTCCAACGGCGTGGCCGAAGTGATGGTGACCTTCGAGCCAGGCACCGACCCGGACATGGCGCAGGTCGACGTGCAGAACCGTTT  <  1:276085/149‑1                                                                                                                                                        ACCAGCATCATCGAACAGTCGCTCAACGGCGCCAAGGGCCTGCTGTACTACGAGTCCACCAACAACTCCAACGGCGTGGCCGAAGTGATGGTGACCTTCGAGCCAGGCACCGACCCGGACATGGCGCAGGTCGACGTGCAGAACCGTTT  <  3:81664/149‑1                                                                                                                                                        ACCAGCATCATCGAACAGTCGCTCAACGGCGCCAAGGGCCTGCTGTACTACGAGTCCACCAACAACTCCAACGGCGTGGCCGAAGTGATGGTGACCTTCGAGCCAGGCACCGACCCGGACATGGCGCAGGTCGACGTGCAGAACCGTTT  <  4:35704/149‑1                                                                                                                                                                                                                                                                                                              CTCGAAGGTCACCATCACTTCGGCCACGCCGTTGGAGTTGTTGGTGGACTCGTAGTACAGCAGGCCCTTGGCGCCGTTGAGCGACTGTTCGATGATGCTGGTCACCGACTCCACCATGACCTTGGCCGAAGCGCCGGGGTAGGAGGCGGTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3214370‑3214219 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggtgaCCAGCATCATCGAACAGTCGCTCAACGGCGCCAAGGGCCTGCTGTACTACGAGTCCACCAACAACTCCAACGGCGTGGCCGAAGTGATGGTGACCTTCGAGCCAGGCACCGACCCGGACATGGCGCAGGTCGACGTGCAGAACCGTTT  >  NC_002947/3214270‑3214417

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.