New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3214219 =	44 (0.690)	3 (0.050)	3/254	NT	6.2%	coding (134/3129 nt)	mexD	multidrug RND transporter MexD
	?	NC_002947	3214270 =	48 (0.790)					coding (185/3129 nt)	mexD	multidrug RND transporter MexD

TGCGAGGGAAGTGAGATGTCCAGGTTCTTCATCCATCGCCCGAACTTCGCCTGGGTCGTGGCGTTGTTCATTTCACTGGCCGGTTTGCTGGTGATTCCATCCTTGCCCGTGGCCCAGTACCCCAACGTGGCGCCACCGCAGATCTCCATCACCGCCTCCTACCCCGGCGCTTCGGCCAAGGTCATGGTGGAGTCGGTGACCAGCATCATCGAACAGTCGCTCAACGGCGCCAAGGGCCTGCTGTACTACGAGTCCACCAACAACTCCAACGGCGTGGCCGAAGTGATGGTGACCT  >  NC_002947/3214071‑3214365                                                                                                                                                     |                                                                                                                                                   aaacggttctgcacgtcgacctgcgccatgtccgggtcggtgcctggctcgaaggtcaccatcacttcggccacgccgttggagttgttggtggactcgtagtacagcaggcccttggcgccgttgagcgactgttcgatgatgctggt                                                                                                                                                    <  3:81664‑M1/1‑1 (MQ=255) aaacggttctgcacgtcgacctgcgccatgtccgggtcggtgcctggctcgaaggtcaccatcacttcggccacgccgttggagttgttggtggactcgtagtacagcaggcccttggcgccgttgagcgactgttcgatgatgctggt                                                                                                                                                    <  1:276085‑M1/1‑1 (MQ=255) aaacggttctgcacgtcgacctgcgccatgtccgggtcggtgcctggctcgaaggtcaccatcacttcggccacgccgttggagttgttggtggactcgtagtacagcaggcccttggcgccgttgagcgactgttcgatgatgctggt                                                                                                                                                    <  4:35704‑M1/1‑1 (MQ=255)       ggAAGTGAGATGTCCAGGTTCTTCATCCATCGCCCGAACTTCGCCTGGGTCGTGGCGTTGTTCATTTCACTGGCCGGTTTGCTGGTGATTCCATCCTTGCCCGTGGCCCATTAACCCAACGTGGCGCCACCGCAGATCTCCATCACCGc                                                                                                                                              <  4:165578/149‑1 (MQ=255)              agaTGTCCAGGTTCTTCATCCATCGCCCGAACTTCGCCTGGGTCGTGGCGTTGTTCATTTCACTGGCCGGTTTGCTGGTGATTCCATCCTTGCCCGTGGCCCAGTACCCCAACGTGGCGCCACCGCAGATCTCCATCACCGCCTCCTAc                                                                                                                                       >  6:234509/1‑149 (MQ=255)                   tCCAGGTTCTTCATCCATCGCCCGAACTTCGCCTGGGTCGTGGCGTTGTTCATTTCACTGGCCGGTTTGCTGGTGATTCCATCCTTGCCCGTGGCCCAGTACCCCAACGTGGCGCCACCGCAGATCTCCATCACCGCCTCCTACCCCgg                                                                                                                                  >  6:152966/1‑149 (MQ=255)                    ccAGGTTCTTCATCCATCGCCCGAACTTCGCCTGGGTCGTGGCGTTGTTCATTTCACTGGCCGGTTTGCTGGTGATTCCATCCTTGCCCGTGGCCCAGTACCCCAACGTGGCGCCACCGCAGATCTCCATCACCGCCTCCTACCCCGgc                                                                                                                                 <  5:230217/149‑1 (MQ=255)                     cAGGTTCTTCATCCATCGCCCGAACTTCGCCTGGGTCGTGGCGTTGTTCATTTCACTGGCCGGTTTGCTGGTGATTCCATCCTTGCCCGTGGCCCAGTACCCCAACGTGGCGCCACCGCAGATCTCCATCACCGCCTCCTACCCCGgc                                                                                                                                 <  5:234509/148‑1 (MQ=255)                           cttcATCCATCGCCCGAACTTCGCCTGGGTCGTGGCGTTGTTCATTTCACTGGCCGGTTTGCTGGTGATTCCATCCTTGCCCGGGGCCCAGTACCCCAACTTGGCGCCAACGCAGATCTCCATCACCGCCTCCTACCCCGGCGCTTCg                                                                                                                           <  6:152118/148‑1 (MQ=255)                               atccatcGCCCGAACTTCGCCTGGGTCGTGGCGTTGTTCATTTCACTGGCCGGTTTGCTGGTGATTCCATCCTTGCCCGTGGCCCAGTACCCCAACGTGGCGCCACCGCAGATCTCCATCACCGCCTCCTACCCCGGCGCTTCGGcc                                                                                                                        >  4:208143/1‑147 (MQ=255)                                  catcGCCCGAACTTCGCCTGGGTCGTGGCGTTGTTCATTTCACTGGCCGGTTTGCTGGTGATTCCATCCTTGCCCGTGGCCCAGTACCCCAACGTGGCGCCACCGCAGATCTCCATCACCGCCTCCTACCCCGGCGCTTCGGCCAAgg                                                                                                                    <  3:208143/148‑1 (MQ=255)                                   atcGCCCGAACTTCGCCTGGGTCGTGGCGTTGTTCATTTCACTGGACGGTTTGCTGGTGATTAGCTCCTTGCCCGTGGCCCAGTACCCCATCGTGGCGCCCCCGCAGATCTCCATCACCGACTCCTACCCCGGCGCGTCGGCCAAGGt                                                                                                                   >  8:145909/1‑148 (MQ=255)                                      gCCCGAACTTCGCCTGGGTCGTGGCGTTGTTCATTTCACTGGCCGGTTTGCTGGTGATTCCATCCTTGCCCGTGGCCCAGTACCCCAACGTGGCGCCACCGCAGATCTCCATCACCGCCTCCTACCCCGGCGCTTCGGCCAAGGTCAtg                                                                                                               >  2:132291/1‑149 (MQ=255)                                        ccGAACTTCGCCTGGGTCGTGGCGTTGTTCATTTCACTGGCCGGTTTGCTGGTGATTCCATCCTTGCCCGTGGCCCAGTACCCCAACGTGGCGCCACCGCAGATCTCCATCACCGCCTCCTACCCCGGCGCTTCGGCCAAGGTCAtggt                                                                                                             >  7:106579/1‑149 (MQ=255)                                         cGAACTTCGCCTGGGTCGTGGCGTTGTTCATTTCACTGGCCGGTTTGCTGGTGATTCCATCCTTGCCCGTGGCCCAGTTCCCCAACGTGGCGCAACCGCAGATCTCCATAAAAGCCTCCTACCCCGGCGCTTCGGCCAAGGTCAtgctg                                                                                                            >  7:158218/1‑149 (MQ=255)                                         cGAACTTCGCCTGGGTCGTGGCGTTGTTCATTTCACTGGCCGGTTTGCTGGTGATTCCATCCTTGCCCGTGGCCCAGTACCCCAACGTGGCGCCACCGCATATCTCCATCACCGCCTCCTACCCCGGCGCTTCGGCCAAGGTCAtggtg                                                                                                            <  1:92277/149‑1 (MQ=255)                                         cGAACTTCGCCTGGGTCGGGGCGTTGTTCATTTCACTGGCCGGTTTGCTGGTGATTCCATCCTTGCCCGTTGCCCAGTAACCCAACGTGGCGCCACCGCAGATCTACATCACCGCCTCCTACCCCGGCGCTTCGGCCAAGGTCAtggtg                                                                                                            <  6:238556/149‑1 (MQ=255)                                           aaCTTCGCCTGGGGCGGGGCGTTGTTCATTTCACTGGCCGGTTTGCTGGTGATTCCATCCTTGCCCGTGGGTCATTTTCAGAACGTGGCGACACCGCAGATCTCCATCACCGCCTCCTACCCCGGCGCTTCGGCCAAGGTCATGGTGGa                                                                                                          <  6:378980/149‑1 (MQ=255)                                                   gaaggtcaccatcacttcggccacgccgttggagttgttggtggactcgtagtacagcaggcccttggcgccgttgagcgactgttcgatgatgctggTCACCGCCTCCTACCCCGGCGCTTCGGCCAAGGTCATGGTGGAGTCGGt                                                                                                    >  8:22797‑M1/99‑147 (MQ=255)                                                   cTGGGTCGTGGCGTTGTTCATTTCACTGGCCGGTTTGCTGGTGATTCCATCCTTGCCCGTGGCCCAGTACCCCAACGTGGCGCCACCGCAGATCTCCATCACCGCCTCCTACCCCGGCGCTTCGGCCAAGGTCATGGTGGAGTCGGTGa                                                                                                  <  7:121743/149‑1 (MQ=255)                                                                ttgttCATTTCACTGGCCGGTTTGCTGGTGATTCCATCCTAGCCCGTGGCCCAGTACCCAAACGTGGCGCCACCGCAGATCTCCATCACCGCCTCCTACCCCGGCGCTTCGGCCAAGGTCATGGTGGAGTCGGTGACCAGCATCATCg                                                                                      >  1:206676/1‑148 (MQ=255)                                                                   ttCATTTCACTGGCCGGTTTGCTGGTGATTCCATCCTTGCCCGTGGCCCAGTACCCCAACGTGGCGCCACCGCAGATCTCCATCACCGCCTCCTACCCCGGCGCTTCGGCCAAGGTCATGGTGGAGTCGGTGACCAGCATCATCGaa                                                                                    >  8:266564/1‑147 (MQ=255)                                                                     cATTTCACTGGCCGGTTTGCTGGTGATTCCATCCTTGCCCGTGGCCCAGTACCCCAACGTGGCGCCACCGCAGATCTCCATCACCGCCTCCTACCCCGGCGCTTCGGCCAAGGTCATGGTGGAGTCGGTGACCAGCATCAACGAACAGt                                                                                >  1:362131/1‑149 (MQ=255)                                                                       tttCACTGGCCGGTTTGCTGGTGATTCCATCCTTGCCCGTGGCCAAGTACACCAACGTGGCGCCACCGCAGATCTCCATCACCGCCTCCTACCCCGGCGCTTCGGCCAAGGTCATGGTGGAGTCGGTGACCAGCATCATCGAACAGTCg                                                                              >  5:209510/1‑149 (MQ=255)                                                                               gCCGGATTGCTGGTGATTCCATCCTTGCCCGTGGCCCAGTACCCCAACGTGGCGCCACCGCAGATCTCCATCACCGCCTCCTACCCCGGCGCTTCGGCCAAGGTCATGGTGGAGTCGGTGACCAGCATCATCGAACAGTCGCTCAAc                                                                        <  8:148655/147‑1 (MQ=255)                                                                                        cTGGTGATTCCATCCTTGCCCGTGGCCCAGTACCCCAACGTGGCGCCACCGCAGATCTCCATCACCGCCTCCTACCCCGGCGCTTCGGCCAAGGTCATGGTGGAGTCGGTGACCAGCATCATCGAACAGTCGCTCAACGGCGCCAAggg                                                             >  8:72208/1‑149 (MQ=255)                                                                                        cTGGTGATTCCATCCTTGCCCGTGGCCCAGTACCCCAACGTGGCGCCACCGCAGATCTCCATCACCGCCTCCTACCCCGGCGCTTCGGCCAAGGTCATGGTGGAGTCGGTGACCAGCATCATCGAACAGTCGCTCAACGGCGCCAAgg                                                              <  2:362131/148‑1 (MQ=255)                                                                                         tGGTGATTCCATCCTTGCCCGTGGCCCAGTACCCCAACGTGGCGCCACCGCAGATCTCCATCACCGCCTCCTACCCCGGCGCTTCGGCCAAGGTCATGGTGGAGTCGGTGACCAGCATCATCGAACAGTCGCTCAACGGCGCCAAGGGc                                                            >  3:301544/1‑149 (MQ=255)                                                                                            tGATTCCATCCTTGCCCGTGGCCCAGTACCCCAACGTGGCGCCACCGCAGATCTCCATCACCGCCTCCTACCCCGGCGCTTCGGCCAAGGTCATGGTGGAGTCGGTGACCAGCATCATCGAACAGTCGCTCAACGGCGCCAAGGGCctg                                                         <  6:209510/149‑1 (MQ=255)                                                                                                  cATCCTTGCCCGTGGCCCAGTACCCCAACGTGGCGCCACCGCAGTTCTCCATCACCGCCTCCTACCCCGGCGCTTCGGCCAAGGTCATGGTGGAGTCGGTGACCa                                                                                               <  7:331684/105‑1 (MQ=255)                                                                                                  cATCCTTGCCCGTGGCCCAGTACCCCAACGTGGCGCCACCGCAGATCTCCATCACCGCCTCCTACCCCGGCGCTTCGGCCAAGGTCATGGTGGAGTCGGTGACCa                                                                                               >  8:331684/1‑105 (MQ=255)                                                                                                   aTCCTTGCCCGTGGCCCAGTACCCCAACGTGGCGCCACCGCAGATCTCCATCACCGCCTCCTACCCCGGCGCTTCGGCCAAGGTCATGGTGGAGTCGGTGACCAGCATCATCGAACAGTCGCTCAACGGCGCCAAGGGCCTGCTGtact                                                  <  2:369985/149‑1 (MQ=255)                                                                                                      cTTGCCCGTGGCCCAGTACCCCAACGTGGCGCCACCGCAGATCTCCATCACCGCCTCCTACCCCGGCGCTTCGGCCAAGGTCATGGTGGAGTCGGTGACCAGCATCATCGAACAGTCGCTCAACGGCGCCAAGGGCCTGCTGtactac                                                <  8:106579/148‑1 (MQ=255)                                                                                                       ttGCCCGTGGCCCAGTACCCCAACGTGGCGCCACCGCAGATCTCCATCACCGCCTCCTACCCCGGCGCTTCGGCCAAGGTCATGGTGGAGTCGGTGACCAGCATCATCGAACAGTCGCTCAACGGCGCCAAGGGCCTGCTGtactac                                                >  6:117795/1‑147 (MQ=255)                                                                                                       ttGCCCGTGGCCCAGTACCCCAACGTGGCGCCACCGCAGATCTCCATCACCGCCTCCTACCCCGGCGCTTCGGCCAAGGTCATGGTGGAGTCGGTGACCAGCATCATCGAACAGTCGCTCAACGGCGCCAAGGGCCTGCTGtactac                                                >  2:102068/1‑147 (MQ=255)                                                                                                       tacagcaggcccttggcgccgttgagcgactgttcgatgatgctggTCACCGCCTCCTACCCCGGCGCTTCGGCCAAGGTCATGGTGGAGTCGGTGa                                                                                                  <  5:71439‑M1/51‑1 (MQ=255)                                                                                                       tacagcaggcccttggcgccgttgagcgactgttcgatgatgctggTCACCGCCTCCTACCCCGGCGCTTCGGCCAAGGTCATGGTGGAGTCGGTGa                                                                                                  >  6:71439‑M1/47‑97 (MQ=255)                                                                                                         gCCCGTGGCCCAGTACCCCAACGTGGCGCCACCGCAGATCTCCATCACCGCCTCCTACCCCGGCGCTTCGGCCAAGGTCATGGTGGAGTCGGTGACCAGCATCATCGAACAGTCGCTCAACGGCGCCAAGGGCCTGCTGTACTACGAg                                             <  5:152966/148‑1 (MQ=255)                                                                                                            cGTGGGCGAGTACGCCAACGTGGCGCCACCGGAGATCTCCATCACGGCCTCCTACCCCGGCGGTTGGGCCAAGGTCATGGTGGAGTCGGTGACCAGCATCATCGAACAGTCGCTCAACGGCGCCATGGGCCTGCTGTACTACGAGTcca                                         <  3:304476/149‑1 (MQ=255)                                                                                                            cGTGGCCCAGTACCCCAACGTGGCGCCACCGCAGATCTCCATCACCGCCTCCTACCCCGGCGCTTCGGCCAAGGTCATGGTGGAGTCGGTGACCAGCATCATCGAACAGTCGCTCAACGGCGCCAAGGGCCTGCTGTACTACGAGTcca                                         <  5:117795/149‑1 (MQ=255)                                                                                                            cGTGGCCCAGTACCCCAACGTGGCGCCACCGCAGATCTCCATCACCGCCTCCTACCCCGGCGCTTCGGCCAAGGTCATGGTGGAGTCGGTGACCAGCATCATCGAACAGTCGCTCAACGGCGCCAAGGGCCTGCTGTACTACGAGTcca                                         <  7:266564/149‑1 (MQ=255)                                                                                                                 cccAGTACCCCAACGTGGCGCCACCGCAGATCTCCATCACCGCCTCCTACCCCGGCGCTTCGGCCAAGGTCATGGTGGAGTCGGTGACCAGCATCATCGAACAGTCGCTCAACGGCGCCAAGGGCCTGCTGTACTACGAGTCCACcaac                                    <  7:72208/149‑1 (MQ=255)                                                                                                                        ccccAACGTGGCGCGACCGCAGATCTCCATCACAGCCTCCTACCCCGGCGCTTCGGCCAAGGTCATGGTGCAGTCGGTGACCAGCATCATCGAACAGTCGCTCAACGGCGCCAATGGCCTGCTGTACTACGAGTCAACCAACAACTcc                              >  7:335129/1‑148 (MQ=255)                                                                                                                         cccAACGTGGCGCCACCGCAGATCTCCATCACCGCCTCCTACCCCGGCGCTTCGGCCAAGGTCATGGTGGAGTCGGTGACCAGCATCATCGAACAGTCGCTCAACGGCGCCAAGGGCCTGCTGTACTACGAGTCCCCCAACAACTCCaa                            >  2:276085/1‑149 (MQ=255)                                                                                                                         cccAACGTGGCGCCACCGCAGATCTCCATCACCGCCTCCTACCCCGGCGCTTCGGCCAAGGTCATGGTGGAGTCGGTGACCAGCATCATCGAACAGTCGCTCAACGGCGCCAAGGGCCTGCTGTACTACGAGTCCACCAACAACTCCaa                            >  2:281786/1‑149 (MQ=255)                                                                                                                           cAACGTGGCGCCACCGCAGATCTCCATCACCGCCTCCTACCCCGGCGCTTCGGCCAAGGTCATGGTGGAGTCGGTGACCAGCATCTTCGAACAGTCGCTCAACGGCGCCAAGGGCCTGCTGTACTACGAGTCCACCAACAACTCCAACg                          >  2:1314/1‑149 (MQ=255)                                                                                                                            aaCGTGGCGCCACCGCAGATCTCCATCACCGCCTCCTACCCCGGCGCTTCGGCCAAGGTCATGGTGGAGTCGGTGACCAGCATCATCGAACAGTCGCTCAACGGCGCCAAGGGCCTGCTGTACTACGAGTCCACCAACAACTCCAACgg                         >  5:95474/1‑149 (MQ=255)                                                                                                                                         cGCAGATCTCCATCACCGCCTCCTACCCCGGCGCTTCGGCCAAGGTCATGGTGGAGTCGGTGACCAGCATCATCGAACAGTCGCTCAACGGCGCCAAGGGCCTGCTGTACTACGAGTcc                                          <  3:354972/119‑1 (MQ=255)                                                                                                                                         cGCAGATCTCCATCACCGCCTCCTACCCCGGCGCTTCGGCCAAGGTCATGGTGGAGTCGGTGACCAGCATCATCGAACAGTCGCTCAACGGCGCCAAGGGCCTGCTGTACTACGAGTcc                                          >  4:354972/1‑119 (MQ=255)                                                                                                                                           cAGATCTCCATCACCGCCTCCTACCCCGGCGCTTCGGCCAAGGTCATGGTGGAGTCGGTGACCAGCATCATCGAACAGTCGCTCAAGGGCGCCAAGGGCCTGCTGTACTACGAGTCCACCAACAACTCCAACGGCGTGGCCGAAGTGAt          <  2:206676/149‑1 (MQ=255)                                                                                                                                                ctcCATCACCGCCTCCTACCCCGGCGCTTCGGCCAAGGTCATGGTGGAGTCGGTGACCAGCATCATCGAACAGTCGCTCAACGGCGCCAAGGGCCTGCTGTACTACGAGTCCACCAACAACTCCAACGGCGTGGCCGAAGTGATGGTGa     >  1:274229/1‑149 (MQ=255)                                                                                                                                                 tcCATCACCGCCTCCTACCCCGGCGCTTCGGCCAAGGTCATGGTGGAGTCGGTGACCAGCATCATCGAACAGTCGCTCAACGGCGCCAAGGGCCTGCTGTACTACGAGTCCACCAACAACTCCAACGGCGTGGCCGAAGTGATGGTGAc    >  7:371826/1‑149 (MQ=255)                                                                                                                                                  ccATCACCGCCTCCTACCCCGGCGCTTCGGCCAAGGTCATGGTGGAGTCGGTGACCAGCATCATCGAACAGTCGCTCAACGGCGCCAAGGGCCTGCTGTACTACGAGTCCACCAACAACTCCAACGGCGTGGCCGAAGTGATGGTGAcc   >  5:333904/1‑149 (MQ=255)                                                                                                                                                   cATCACCGCCTCCTACCCCGGCGCTTCGGCCAAGGTCATGGTGGAGTCGGTGACCAGCATCATCGAACAGTCGCTCAACGGCGCCAAGGGCCTGCTGTACTACGAGTCCACCAACAACTCCAACGGCGTGGCCGAAGTGATGGTGACCt  >  1:43991/1‑149 (MQ=255)                                                                                                                                                   cATCACCGCCTCCTACCCCGGCGCTTCGGCCAAGGTCATGGTGGAGTCGGTGACCAGCATCATCGAACAGTCGCTCAACGGCGCCAAGGGCCTGCTGTACTACGAGTCCACCAACAACTCCAACGGCGTGGCCGAAGTGATGGTGACCt  >  6:270116/1‑149 (MQ=255)                                                                                                                                                   cATCACCGCCTCCTACCCCGGCGCTTCGGCCAAGGTCATGGTGGAGTCGGTGACCAGCATCATCGAACAGTCGCTCAACGGCGCCAAGGGCCTGCTGTACTACGAGTCCACCAACAACTCCAACGGCGTGGCCGAAGTGATGGTGACCt  >  1:178314/1‑149 (MQ=255)                                                                                                                                                   cATCACCGCCTCCTACCCCGGCGCTTCGGCCAAGGTCATGGTGGAGTCGGTGACCAGCATCATCGAACAGTCGCTCAACGGCGCCAAGGGCCTGCTGTACTACGAGTCCACCAACAACTCCAACGGCGTGGCCGAAGTGATGGTGACCt  >  3:35704/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                   TGCGAGGGAAGTGAGATGTCCAGGTTCTTCATCCATCGCCCGAACTTCGCCTGGGTCGTGGCGTTGTTCATTTCACTGGCCGGTTTGCTGGTGATTCCATCCTTGCCCGTGGCCCAGTACCCCAACGTGGCGCCACCGCAGATCTCCATCACCGCCTCCTACCCCGGCGCTTCGGCCAAGGTCATGGTGGAGTCGGTGACCAGCATCATCGAACAGTCGCTCAACGGCGCCAAGGGCCTGCTGTACTACGAGTCCACCAACAACTCCAACGGCGTGGCCGAAGTGATGGTGACCT  >  NC_002947/3214071‑3214365

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.