| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3366553 = | 47 (0.740) | 18 (0.290) | 17/262 | NT | 30.2% | intergenic (+219/‑142) | PP_2962/PP_2964 | alcohol dehydrogenase/transposase |
| ? | NC_002947 | 4950854 = | 37 (0.590) | intergenic (‑4/+153) | fliL/fliK | flagellar protein FliL/flagellar hook‑length control protein FliK | |||||
ACACATCCCCCAAGCGAGGCAAAAGCATCAGCATAGACGGCTAGCCAGACGGTGGATGACCAGCAAGCCACGGCCTCTCGAATAACCTTTTAAATCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3366700‑3366553‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTATGCCAGATTTTGCAGGGGATGGATTCCAGCAGGTTTTGCGGTGCTGGCTTCTTCGCGGGCTCGCCCGCGAAGAAGCCAGCCCA > NC_002947/4950854‑4950994 ACACATCCCCCAAGCGAGGCAAAAGCATCAGCATAGACGGCTAGCCAGACGGTGGATGACCAGCAAGCCACGGCCTCTCGAATAACCTTTTAAATCATATATTTACAGACCGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCC < 7:127195/148‑1 AAGCATCAGCATAGACGGCTAGCCAGACGGTGGATGACCAGCAAGCCACGGCCTCTCGAATAACCTTTTAAATCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCAATAATCCGTCGTCCATCGGGGG < 3:333468/149‑1 ATCAGCATAGACGGCTAGCCAGACGGTGGATGACCAGCAAGCCACGGCCTCTCGAATAACCTTTTAAATCATATATTTACAGAACGAATGTCCAAATTTTTGCCTTATCTCGGCATAACCCCAATAATCCGTCGTCCATCGGGGGTTC > 4:372415/1‑148 GGCTAGCCAGACGGTGGATGACCAGCAAGCCACGGCCTCTCGAATAACCTTTTAAATCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCAATAATCCGTCGTCCATCGGGGGTTCATAGGAGAATGGC > 2:52171/1‑149 GCTAGCCAGACGGTGGATGACCAGCAAGCCACGGCCTCTCGAATAACCTTTTAAATCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCC < 4:383097/108‑1 GCTAGCCAGACGGTGGATGACCAGCAAGCCACGGCCTCTCGAATAACCTTTTAAATCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCC > 3:383097/1‑108 CAGACGGTGGATGACCAGCAAGCCACGGCCTCTCGAATAACCTTTTAAATCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTT < 4:65476/149‑1 ATGACCAGCAAGCCACGGCCTCTCGAATAACCTTTTAAATCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGA < 1:388194/141‑1 ATGACCAGCAAGCCACGGCCTCTCGAATAACCTTTTAAATCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGA > 2:388194/1‑141 CCAGCAAGCCACGGCCTCTCGAATAACCTTTTAAATCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTAT < 7:281518/148‑1 TCGAATAACCTTTTAAATCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCAATAATCCGTCTACCATAGGGGGTTCAAAGGAGAATGGCTTTGCTTGAGCAAGTGTTATGCCAGATTTTTAAGGGTAT > 5:29289/1‑149 AACCTTTTAAATCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTATGCCAGATTTTGCAGGGGATGGATTC > 1:370294/1‑149 TTAAATCATATCTTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTATGCCAGATTTTGCAGGGGATGGATTCCAGCA < 4:132317/148‑1 ACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTATGCCAGATTTTGCAGGGGATGGATTCCAGCAGGTTTTGCGGTGCTG < 2:294987/148‑1 CAGAACGAATGTCCAAATTTTTGCCTTATCTCGGCATAACCCCAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTATGCCAGATTTTGCAGGGGATGGATTCCAGCAGGTTTTGCGGTGCTGG < 3:372415/148‑1 AACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTATGCCAGATTTTGCAGGGGATGGATTCCAGCAGGTTTTGCGGTGCTGGCTTC > 7:105091/1‑149 TAATTTTTGCCTTATCTCGGCATAACCCCAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTATGCCAGATTTTGCAGGGGATGGATTCCAGCA < 8:300881/118‑1 TTTGCCTTATCTCGGCATAACCCCAATAATCCGTCGTCCATCGGGGGTTCATAGGAGAATGGCTTGGCTTGAGCAAGTGTTATGCCAGATTTTGCAGGGGATGGATTCCAGCAGGTTTTGCGGTGCTGGCTTCTTCGCGGGCTCGCCC < 1:52171/148‑1 TTATCTCGGCATAACCCCAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGGTTGAGCAAGTGGTATGCCAGCTTTTGCCGGGGATGGATTCCAGCGGGTTTTGCGGTGCTGGCTTCTTCGCGGGCTCGCCCGCGAggg > 4:152342/1‑146 ATCTCGTCAAAACCCCAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTATGCCAGATTTTGCAGGGGATGGATTCCAGCAGGTTTTGCGGTGCTGGCTTCTTCGCGGGCTCGCCCGCGAAGAA < 6:29289/148‑1 ATAACCCCAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTATGCCAGATTTTGCAGGGGATGGATTCCAGCAGGTTTTGCGGTGCTGGCTTCTTCGCGGGCTCGCCCGCGAAGAAGCCAGCCCA > 4:271102/1‑149 ACACATCCCCCAAGCGAGGCAAAAGCATCAGCATAGACGGCTAGCCAGACGGTGGATGACCAGCAAGCCACGGCCTCTCGAATAACCTTTTAAATCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3366700‑3366553‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTATGCCAGATTTTGCAGGGGATGGATTCCAGCAGGTTTTGCGGTGCTGGCTTCTTCGCGGGCTCGCCCGCGAAGAAGCCAGCCCA > NC_002947/4950854‑4950994 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |