New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3366553 =	47 (0.740)	18 (0.290)	17/262	NT	30.2%	intergenic (+219/‑142)	PP_2962/PP_2964	alcohol dehydrogenase/transposase
	?	NC_002947	4950854 =	37 (0.590)					intergenic (‑4/+153)	fliL/fliK	flagellar protein FliL/flagellar hook‑length control protein FliK

CGGAGCCGGCTCGCTCTTGTGCATGATGAACCAGGTAGCGCCCACCGAAAGGCCGATCGCCAGCAACAGGCCGACGACAGCCAGCAGGATCAGCTTGAGTTTGCCTTTAGTGGCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTATGCCAGATTTTGCAGGGGATGGATTCCAGCAGGTTTTGCGGTGCTGGCTTCTTCGCGGGCTCGCCCGCGAAGAAGCCAGCCCAGGCCAACA  >  NC_002947/4950707‑4951002                                                                                                                                                    |                                                                                                                                                     cGGAGCCGGCTCGCTCTTGTGCATGATGAACCAGGTAGCGCCCACCGAAAGGCCGATCGCCAGCAACAGGCCGACGACAGCCAGCAGGATCAGCTTGAGTTTGCCTTTAGTGGAGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCaaa                                                                                                                                                     >  7:234136/1‑149 (MQ=255)          ctcgctcTTGTGCATGATGAACCAGGTAGCGCCCACCGAAAGGCCGATCGCCAGCAACAGGCCGACGACAGCCAGCAGGATCAGCTTGAGTTTGCCTTTAGTGGCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAATCcgtc                                                                                                                                            <  7:214076/149‑1 (MQ=255)             gctcTTGTGCATGATGAACCAGGTAGCGCCCACCGAAAGGCCGATCGCCAGCAACAGGCCGACGACAGCCAGCAGGATCAGCTTGAGTTTGCCTTTAGTGGCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAAggggtcatg                                                                                                                                         <  5:46861‑M2/149‑10 (MQ=255)             gctcTTGTGCATGATGAACCAGGTAGCGCCCACCGAAAGGCCGATCGCCAGCAACAGGCCGACGACAGCCAGCAGGATCAGCTTGAGTTTGCCTTTAGTGGCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAAggggtca                                                                                                                                           >  1:215313‑M2/1‑140 (MQ=255)                      cATGATGAACCAGGTAGCGCCCACCGAAAGGCCGATCGCCAGCAACAGGCCGACGACAGCCAGCAGGATCAGCTTGAGTTTGCCTTTAGTGGCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAAggggtca                                                                                                                                           >  2:9359‑M2/1‑131 (MQ=255)                      cATGATGAACCAGGTAGCGCCCACCGAAAGGCCGATCGCCAGCAACAGGCCGACGACAGCCAGCAGGATCAGCTTGAGTTTGCCTTTAGTGGCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAAggggtca                                                                                                                                           <  1:9359‑M2/138‑8 (MQ=255)                      aagcatcagcatagacggctagccagacggtggatgaccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccAATAATCCGTCGTCCATCggggg                                                                                                                                <  3:333468‑M2/23‑1 (MQ=255)                        tgatgaACCAGGTAGCGCCCACCGAAAGGCCGATCGCCAGCAACAGGCCGACGACACCCAGCAGGAGCAGCTTGAGTTTGCCTTTAGTGGCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAATCCGTCGTCCATCGGGGGtt                                                                                                                              <  7:139052/149‑1 (MQ=255)                          atgaACCAGGTAGCGCCCACCGAAAGGCCGATCGCCAGCAACAGGCCGACGACAGCCAGCAGGATCAGCTTGAGTTTGCCTTTAGTGGCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAAggggtcatgccgagataaggc                                                                                                                             <  1:181626‑M2/148‑22 (MQ=255)                          atgaACCAGGTAGCGCCCACCGAAAGGCCGATCGCCAGCAACAGGCCGACGACAGCCAGCAGGATCAGCTTGAGTTTGCCTTTAGTGGCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAATCCGTCGTCCATCGGGGGTTc                                                                                                                             <  6:9309/148‑1 (MQ=255)                          atcagcatagacggctagccagacggtggatgaccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtccaaatttttgccttatctcggcataaccccAATAATCCGTCGTCCATCGGGGGTTc                                                                                                                             >  4:372415‑M2/123‑148 (MQ=255)                           tgaACCAGGTAGCGCCCACAGAAAGGCCGATCGCCAGCAACAGGCCGACGACAGCCAGCAGGATCAGCTTGAGTTTGCCTTTAGTGGCGGGGTCTTTGAGTGCTTCGCTCTTCGCCATGCCATTAATCCGTCGTCCATCGGGGGTTCa                                                                                                                            >  6:54091/1‑148 (MQ=255)                            gaACCAGGTAGCGCCCACCGAAAGGCCGATCGCCAGCAACAGGCCAACGACAGCCAGCAGGATCAGCTTGAGTTTGCCTTTAGTGGCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAATCCGTCGTCCATCGGGGGTTCa                                                                                                                            >  1:279654/1‑147 (MQ=255)                             aaCCAGGTAGCGCCCACCGAAAGGCCGATCGCCAGCAACAGGCCGACGACAGCCAGCAGGATCAGCTTGAGTTTGCCTTTAGTGGCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAAggggtcatgccgagataaggcaaa                                                                                                                          <  6:19474‑M2/148‑25 (MQ=255)                             aaCCAGGTAGCGCCCAACGAAAGGCCCATCGCCAGCAACAGGCCGACGACAGCCAGCAGGATCAGCTTGAGTTTGCCGTTAGTGGCGGGGTCTTTGACTGCTTCGCTCTTCGGCATGCCAATAATCCGTCGTCCATCGGGGGTTCAAAg                                                                                                                         >  4:244279/1‑149 (MQ=255)                              aCCAGGTAGCGCCCACCGAAAGGCCGATCGCCAGCAACAGGCCGACGACAGCCAGCAGGATCAGCTTGAGTTTGCCTTTAGTGGCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAATCCGTCGTCCATCGGGGGTTCAAAg                                                                                                                         >  7:308657/1‑148 (MQ=255)                              aCCAGGTAGCGCCCACCGAAAGGCCGATCGCCAGCAACAGGCCGACGACAGCCAGCAGGATCAGCTTGAGTTTGCCTTTAGTGGCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAATCCGTCGTCCATCGGGGGTTCAAAg                                                                                                                         >  7:26417/1‑148 (MQ=255)                               ccAGGTAGCGCCCACCGAAAGGCCGATCGCCAGCAACAGGCCGACGACAGCCAGCAGGATCAGCTTGAGTTTGCCTTTAGTGGCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAATCCGTCGTCCATCGGGGGTTCAAAGga                                                                                                                       <  7:240380/149‑1 (MQ=255)                                   gTAGCGCCCACCGAAAGGCCGATCGCCAGCAACAGGCCGACGACAGCCAGCAGGATCAGCTTGAGTTTGCCTTTAGTGGCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCaataa                                                                                                                                                  >  1:2759/1‑118 (MQ=255)                                   gTAGCGCCCACCGAAAGGCCGATCGCCAGCAACAGGCCGACGACAGCCAGCAGGATCAGCTTGAGTTTGCCTTTAGTGGCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCaataa                                                                                                                                                  <  2:2759/118‑1 (MQ=255)                                      ggctagccagacggtggatgaccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccAATAATCCGTCGTCCATCGGGGGTTCATAGGAGAAtggc                                                                                                                >  2:52171‑M2/111‑149 (MQ=255)                                        gcCCACCGAAAGGCCGATCGCCAGCAACAGGCCGACGACAGCCAGCAGGATCAGCGTGAGTTTGCCTTTAGTGGCGGGGTCTTTGCCTGCTTCGCTCTTCGCCATGCCAATAAgcggtcatgccgagataaggcaaaaattaggacatt                                                                                                              <  3:102211‑M2/149‑37 (MQ=255)                                         cccACCGAAAGGCCGATCGCCAGCAACAGGCCGACGACAGCCAGCAGGATCAGCTTGAGTTTGCCTTTAGTGGCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAAtggcttg                                                                                                             >  2:202985/1‑149 (MQ=255)                                          ccACCGAAAGGCCGATCGCCAGCTACAGGCCGACGACAGCGAGCAGGTTGAGCGTGAGTTTGCCGGTAGTGGCGGGGTCGTTGACTGCTTCGCTCTTCGCCATGCGAATTCTCCGTCGTCCATCGGGGGTTCTCTGGAGAAtggcttgg                                                                                                            >  8:217642/1‑149 (MQ=255)                                          ccACCGAAAGGCCGATCGCCAGCAACAGGCCGACGACAGCCAGCAGGATCAGCTTGAGTTTGCCTTTAGTGGCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAATCCGTCG‑CCATCGGGGGTTCAAAGGAGAAtggcttggc                                                                                                           >  2:63577/1‑149 (MQ=255)                                           cACCGAAAGGACGATCGCCAGCAACAGGCCGACGACAGCCAGCAGGATCAGCTTGAGTTTGCCTTTAGTGGCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAAtggcttggc                                                                                                           <  2:279654/149‑1 (MQ=255)                                            aCCGAAAGGCCGATCGCCAGCAACAGGCCGACGACAGCCAGCAGGATCAGCTTGAGTTTGCCTTTAGTGGCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAAggggtcatgccgagataaggcaaaaattaggacattcgtt                                                                                                          >  6:46861‑M2/1‑109 (MQ=255)                                            aCCGAAAGGCCGATCGCCAGCAACAGGCCGACGACAGCCAGCAGGATCAGCTTGAGTTTGCCTTTAGTGGCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAAtggcttggct                                                                                                          >  4:370762/1‑149 (MQ=255)                                             cagacggtggatgaccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATggcttggctt                                                                                                         <  4:65476‑M2/46‑1 (MQ=255)                                              cGAAAGGCCGATCGCCAGCAACAGGCCGACGACAGCCAGCAGGATCAGCTTGAGTTTGCCTTTAGTGGCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATggcttggctt                                                                                                         >  1:198077/1‑148 (MQ=255)                                               gAAAGGCCGATCGCCAGCAACAGGCCGACGACAGCCAGCAGGATCAGCTTGAGTTTGCCTTTAGTGGCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAAggggtcatgccgagataaggcaaaaattaggacattcgttctc                                                                                                       >  2:188694‑M2/1‑106 (MQ=255)                                               gAAAGGCCGATCGCCAGCAACAGGCCGACGACAGCCAGCAGGATCAGCTTGAGTTTGCCTTTAGTGGCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAAggggtcatgccgagataaggcaaaaattaggacattcgttctc                                                                                                       >  1:63363‑M2/1‑106 (MQ=255)                                               gAAAGGCCGATCGCCAGCAACAGGCCGACGACAGCCAGCAGGATCAGCTTGAGTTTGCCTTTAGTGGCGGGGTCTTTGACTGCTTCGCTCTTCACCATGCCAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGa                                                                                                       <  6:385941/149‑1 (MQ=255)                                                     ccGATCGCCAGCAACAGGCCGACGACAGCCAGCAGGATCAGCTTGAGTTTGCCTTTAGTGGCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAATCCGTCGTCCATCGGGGGTTCATAGGAGAATGGCTTGGCTTGAGCAAgt                                                                                                 <  2:322829/149‑1 (MQ=255)                                                      cGATCGCCAGCAACAGGCCGACGACAGCCAGCAGGATCAGCTTGAGTTTGCCTTTAGTGGCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAgtg                                                                                                <  8:347226/149‑1 (MQ=255)                                                       gATCGCCAGCAACAGGCCGACGACAGCCAGCAGGATCAGCTTGAGTTTGCCTTTAGTGGCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAgtgt                                                                                               <  8:26417/149‑1 (MQ=255)                                                       atgaccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGa                                                                                                       <  1:388194‑M2/48‑1 (MQ=255)                                                       atgaccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGa                                                                                                       >  2:388194‑M2/94‑141 (MQ=255)                                                        aTCGCCAGCAACAGGCCGACGACAGCCAGCAGGATCAGCTTGAGTTTGCCTTTAGTGGCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGtt                                                                                              <  2:198077/149‑1 (MQ=255)                                                           gCCAGCAACAGGCCGACGACAGCCAGCAGGATCAGCTTGAGTTTGCCTTTAGTGGCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTAt                                                                                            <  8:308657/148‑1 (MQ=255)                                                           ccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTAt                                                                                            <  7:281518‑M2/59‑1 (MQ=255)                                                             cAGCAACAGGCCGACGACAGCCAGCAGGATCAGCTTGAGTTTGCCTTTAGTGGCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAAggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatt                                                                                         <  1:121368‑M2/149‑58 (MQ=255)                                                             cAGCAACAGGCCGACGACAGCCAGCAGGATCAGCTTGAGTTTGCCTTTAGTGGCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAAggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatt                                                                                         >  5:200634‑M2/1‑92 (MQ=255)                                                                  aCAGGCCGACGACAGCCAGCAGGATCAGCTTGAGTATGCCTTTAGTGGCGGGGTCTTTGGCTGCTTCGCTCTTCGCCATGCCAATAAggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaac                                                                                    >  3:288540‑M2/1‑87 (MQ=255)                                                                       ccGACGACAGCCAGCAGGATCAGCTTGAGTTTGCCTTTAGTGGCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAATCCGTCG‑CCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTATGCCAGATTTTGCAg                                                                              <  1:63577/149‑1 (MQ=255)                                                                         gacgacAGCCAGCAGGATCAGCTTGAGTTTGCCTTTAGTGGCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAATCCGGCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTATGCCAGATTTTGCAgg                                                                             <  3:21661/149‑1 (MQ=255)                                                                          acgacAGCCAGCAGGATCAGCTTGAGTTTGCCTTTAGTGGCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAAggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagat                                                                            <  7:72640‑M2/149‑71 (MQ=255)                                                                             tcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccAATAATCCGTCTACCATAGGGGGTTCAAAGGAGAATGGCTTTGCTTGAGCAAGTGTTATGCCAGATTTTTAAGGgtat                                                                         >  5:29289‑M2/72‑149 (MQ=255)                                                                                   agcagGATCAGCCTGAGTGTGCCTTTAGTGGCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTATGCCAGATTTTGCAGGGGATGGATTc                                                                   <  4:165120/149‑1 (MQ=255)                                                                                   aaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTATGCCAGATTTTGCAGGGGATGGATTc                                                                   >  1:370294‑M2/66‑149 (MQ=255)                                                                                         ttaaatcatatctttacagaacgaatgtcctaatttttgccttatctcggcataaccccAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTATGCCAGATTTTGCAGGGGATGGATTCcagca                                                              <  4:132317‑M2/89‑1 (MQ=255)                                                                                         aTCAGCTTGAGTTTGCCTTTAGTGGCGGGTTAGTTGACTGCTTCGCTCTTCGCCATGCCAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTATGCCAGATTTTGCAGGGGATGGATTCcagca                                                              <  8:234136/148‑1 (MQ=255)                                                                                               ttGAGTTTGCCTTTAGTGGCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTATGCCAGATTTTGCAGGGGATGGATTCCAGCAGGTTTTg                                                       >  6:126787/1‑149 (MQ=255)                                                                                                        acagaacgaatgtcctaatttttgccttatctcggcataaccccAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTATGCCAGATTTTGCAGGGGATGGATTCCAGCAGGTTTTGCGGTGCTg                                               <  2:294987‑M2/104‑1 (MQ=255)                                                                                                         cagaacgaatgtccaaatttttgccttatctcggcataaccccAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTATGCCAGATTTTGCAGGGGATGGATTCCAGCAGGTTTTGCGGTGCTgg                                              <  3:372415‑M2/105‑1 (MQ=255)                                                                                                         cTTTAGTGGCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTATGCCAGATTTTGCAGGGGATGGATTCCAGCAGGTTTTGCGGTGCTGGc                                             >  7:132108/1‑149 (MQ=255)                                                                                                            aacgaatgtcctaatttttgccttatctcggcataaccccAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTATGCCAGATTTTGCAGGGGATGGATTCCAGCAGGTTTTGCGGTGCTGGcttc                                          >  7:105091‑M2/41‑149 (MQ=255)                                                                                                                ggCGTGGGCTTTGAGTGCATCGCTCTTCGCCATGCCAATATTGCTTCGTGCATCGTGGGTTCAAAGGAGAATGGCCTGGCTTGAGCAAGTGTTATGCCAGATTTTGCAGGGGTTGGATTCCAGCAGGTTTTGCGGTGCTGGCttcttc                                       <  7:217642/148‑1 (MQ=255)                                                                                                                 gCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAATCCGTCGTCCATCGGGTGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTATGCCAGATTTTGCAGGGGATGGATTCCAGCAGGTTTTGCGGTGCTGGCTTCTTcgc                                     <  3:244279/149‑1 (MQ=255)                                                                                                                 gCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTATGCCAg                                                                                       <  5:191832/99‑1 (MQ=255)                                                                                                                 gCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTATGCCAg                                                                                       >  6:191832/1‑99 (MQ=255)                                                                                                                   ggggTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTATGCCAGATTTTGCAGGGGATGGATTCCAGCAGGTTTTGCGGTGCTGGCTTCTTCGCgg                                   <  1:202985/149‑1 (MQ=255)                                                                                                                     ggTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAATCCGTCCTCCATCGGGGGTGCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTATGCCAGATTTTGCAGGGGATGGATTCCAGCAGGTTTTGCGGTGCTGGCTTCTTCGCGGGc                                 <  8:196733/149‑1 (MQ=255)                                                                                                                      gTCTTTGACTGCGTCGCTCTTCGCACAGCCAATAAcgggtcatgccgagataatgcaaaacttaggacattccttctctaagctattgtatttaaacgagtagattagaacgcctgctcagcaatgcctgcttcgcgcccaatcgcatc                                >  4:102211‑M2/1‑35 (MQ=255)                                                                                                                       taatttttgccttatctcggcataaccccAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTATGCCAGATTTTGCAGGGGATGGATTCcagca                                                              <  8:300881‑M2/89‑1 (MQ=255)                                                                                                                       tCTTTGACTGCTTCGCTCTTCGCCATGCCAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTATGCCAGATTTTGCAGGGGATGGATTCCAGCAGGTTTTGCGGTGCTGGCTTCTTCGCGGGCTc                               >  2:259405/1‑149 (MQ=255)                                                                                                                           tGACTGCTTCGCTCTTCGCCATGCCAATAAggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccctgctcagcaaagactgcttcgcgcccaatcgcttcagcc                            >  8:72640‑M2/1‑30 (MQ=255)                                                                                                                            tttgccttatctcggcataaccccAATAATCCGTCGTCCATCGGGGGTTCATAGGAGAATGGCTTGGCTTGAGCAAGTGTTATGCCAGATTTTGCAGGGGATGGATTCCAGCAGGTTTTGCGGTGCTGGCTTCTTCGCGGGCTCGccc                           <  1:52171‑M2/124‑1 (MQ=255)                                                                                                                             actactTCGCTCTTCGCCATGCCAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTATGCCAGATTTTGCAGGGGATGGATTCCAGCAGGTTTTGCGGTGCTGGCTTCTTCGCGGGCTCGCCcgc                         <  2:314573/149‑1 (MQ=255)                                                                                                                               tGCTTCGCTCTTCGCCATGCCAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTATGCCAGATTTTGCAGGGGATGGATTCCAGCAGGTTTTGCGGTGCTGGCTTCTTCGCGGGCTCGCCcgcg                        >  1:61443/1‑148 (MQ=255)                                                                                                                                 cTTCGCTCTTCGGCATTCCAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGGTTGAGCAAGTGTTATGCCAGATTTTGCAGTGGATGGATTCCAGCAGGTTTTGGGGTGCTGGCTTCTTCGCGGGCGAGCCCGCga                       <  5:54091/147‑1 (MQ=255)                                                                                                                                  ttatctcggcataaccccAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGGTTGAGCAAGTGGTATGCCAGCTTTTGCCGGGGATGGATTCCAGCGGGTTTTGCGGTGCTGGCTTCTTCGCGGGCTCGCCcgcgaggg                    >  4:152342‑M2/19‑146 (MQ=255)                                                                                                                                    cGCTCTTCGCCATGCCAATAAggggtcatgccgagataaggcaaaaattaggacattcgttctctaagcttttgtatttaaacgagtagattagaagccctgctcagcaaagactgcttcgcgcccaatcgcttcagccatccattga                   >  2:181626‑M2/1‑21 (MQ=255)                                                                                                                                    atctcgtcaaaaccccAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTATGCCAGATTTTGCAGGGGATGGATTCCAGCAGGTTTTGCGGTGCTGGCTTCTTCGCGGGCTCGCCCGCgaagaa                   <  6:29289‑M2/132‑1 (MQ=255)                                                                                                                                         ttCGCCATGCCAATAAggggtcatgccgagataaggcaaaaattaggacattcgttctctaag                                                                                                   >  5:204581‑M2/1‑16 (MQ=255)                                                                                                                                         ttCGCCATGCCAATAAggggtcatgccgagataaggcaaaaattaggacattcgttctctaag                                                                                                   <  6:204581‑M2/63‑48 (MQ=255)                                                                                                                                            ataaccccAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTATGCCAGATTTTGCAGGGGATGGATTCCAGCAGGTTTTGCGGTGCTGGCTTCTTCGCGGGCTCGCCCGCGAAGAAGCCAGCCCa          >  4:271102‑M2/9‑149 (MQ=255)                                                                                                                                             ccATGCCAATAAggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccctgctcagcaaagactgcttcgcgcccaatcgcttcagccatccattgaggaaggtttg         >  2:121368‑M2/1‑12 (MQ=255)                                                                                                                                                    aataatCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTATGCCAGATTTTGCAGGGGATGGATTCCAGCAGGTTTTGCGGTGCTGGCTTCTTCGCGGGCTCGCCCGCGAAGAAGCCAGCCCAGGCCAACa  <  1:259405/149‑1 (MQ=255)                                                                                                                                                    aataatCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTATGCCAGATTTTGCAGGGGATGGATTCCAGCAGGTTTTGCGGTGCTGGCTTCTTCGCGGGCTCGCCCGCGAAGAAGCCAGCCCAGGCCAACa  <  3:370762/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                     CGGAGCCGGCTCGCTCTTGTGCATGATGAACCAGGTAGCGCCCACCGAAAGGCCGATCGCCAGCAACAGGCCGACGACAGCCAGCAGGATCAGCTTGAGTTTGCCTTTAGTGGCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTATGCCAGATTTTGCAGGGGATGGATTCCAGCAGGTTTTGCGGTGCTGGCTTCTTCGCGGGCTCGCCCGCGAAGAAGCCAGCCCAGGCCAACA  >  NC_002947/4950707‑4951002

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.