New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3366553 =	47 (0.740)	18 (0.290)	17/262	NT	30.2%	intergenic (+219/‑142)	PP_2962/PP_2964	alcohol dehydrogenase/transposase
	?	NC_002947	4950854 =	37 (0.590)					intergenic (‑4/+153)	fliL/fliK	flagellar protein FliL/flagellar hook‑length control protein FliK

ATGAAAGTCGTTCCTTGACGTGAGGGGCTTTGTTCCAGGCGGTGCCGGCGGCCGGTCAAGCTGGCTGCAGTCGAAGTGGTGACTTCGTCGCTACTGTCGGGAGGAAAGGGTGAGGCAGAAAAATCGATCATTCACGCGGGGTTATACCGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTGGCTAGCCGTCTATGCTGATGCTTTTGCCTCGCTTGGGGGATGTGT  >  NC_002947/3366405‑3366700                                                                                                                                                     |                                                                                                                                                    aTGAAAGTCGTTCCTTGACGTGAGGGGCTTTGTTCCAGGCGGTGCCGGCGGCCGGTCAAGCTGGCTGCAGTCGAAGTGGTGACTTCGTCGCTACTGTCGGGAGGAAAGGGTGAGGCAGAAAAATGGATCATTCACGCGGGGTTATACCg                                                                                                                                                     >  2:138366/1‑149 (MQ=255)   gAAAGTCGTTCCTTGACGTGAGGGGCTTTGTTCCAGGCGGTGCCGGCGGCCGGTCAAGCTGGCTGCAGTCGAAGTGGTGACTTCGTCGCTACTGTCGGGAGGAAAGGGTGAGGCAGAAAAATCGATCATTCACGCGGGGTTATACCggg                                                                                                                                                   >  7:58689/1‑149 (MQ=255)    aaaGTCGTTCCTTGACGTGAGGGGCTTTGTTCCAGGCGGTGCCGGCGGCCGGTCAAGCTGGCTGCAGTCGAAGTGGTGACTTCGTCGCTACTGTCGGGAGGAAAGGGTGAGGCAGAAAAATCGATCATTCACGCGGGGTTATACCggg                                                                                                                                                   <  8:288993/148‑1 (MQ=255)     aaGTCGTTCCTTGACGTGAGGGGCTTTGTTCCAGGCGGTGCCGGCGGCCGGTCAAGCTGGCTGCAGTCGAAGTGGTGACTTCGTCGCTACTGTCGGGAGGAAAGGGTGAGGCAGAAAAATCGATCATTCACGCGGGGTTATACCGGGGt                                                                                                                                                 <  1:99895/149‑1 (MQ=255)        tgggctggcttcttcgcgggcgagcccgcgaagaagccagcaccgcaaaacctgctggaatccatcccctgcaaaatctggcataacacttgctcaagccaagccattctcctttgaacccccgatggacgacggattattGGGGTTAt                                                                                                                                              >  4:271102‑M1/142‑149 (MQ=255)           ttCCTTGACGTGAGGGGCTTTGTTCCAGGCGGTGCCGGCGGCCGGTCAAGCTGGCTGCAGTCGAAGTGGTGACTTCGTCGCTACTGTCGGGAGGAAAGGGTGAGGCAGAAAAATCGATCATTCACGCGGGGTTATACCGGGGTTATGcc                                                                                                                                           >  3:213031/1‑149 (MQ=255)            tCCTTGACGTGAGGGGCTTTGTTCCAGGCGGTGCCGGCGGCCGGTCAAGCTGGCTGCAGTCGAAGTGGTGACTTCGTCGCTACTGTCGGGAGGAAAGGGTGAGGCAGAAAAATCGATCATTCACGCGGGGTTATACCGGGGTTATGcc                                                                                                                                           >  2:34891/1‑148 (MQ=255)               ttGACGTGAGGGGCTTTGTTCCAGGCGGTGCCGGCGGCCGGTCAAGCTGGCTGCAGTCGAAGTGGTGACTTCGTCGCTACTGTCGGGAGGAAAGGGTGAGGCAGAAAAATCGATCATTCACGCGGGGTTATACCGGGGTTATGcc                                                                                                                                           >  8:225762/1‑145 (MQ=255)                 ttcttcgcgggcgagcccgcgaagaagccagcaccgcaaaacctgctggaatccatcccctgcaaaatctggcataacacttgctcaagccaagccattctcctttgaacccccgatggacgacggattattGGGGTTTTGACGAGAt                                                                                                                                      <  6:29289‑M1/16‑1 (MQ=255)                  ccctcgcgggcgagcccgcgaagaagccagcaccgcaaaacccgctggaatccatccccggcaaaagctggcataccacttgctcaacccaagccattctcctttgaacccccgatggacgacggattattGGGGTTATGCCGAGATaa                                                                                                                                    >  4:152342‑M1/132‑149 (MQ=255)                  aCGTGAGGGGCTTTGTTCCAGGCGGTGCCGGCGGCCGGTCAAGCTGGCTGCAGTCGAAGTGGTGACTTCGTCGCTACTGTCGGGAGGAAAGGGTGAGGCAGAAAAATCGATTATTCACGCGGGGTTATACCGGGGTTATGCCGAGATaa                                                                                                                                    <  8:58689/149‑1 (MQ=255)                       aGGGGCTTTGTTCCAGGCGGTGCCGGCGGCCGGTCAAGCTGGCTGCAGTCGAAGTGGTGACTTCGTCGCTACTGTCGGGAGGAAAGGGTGAGGCAGAAAAATCGATCATTCACGCGGGGTTATACCGGGGTTATGCCGAGATAAGGCa                                                                                                                                >  6:302432/1‑148 (MQ=255)                         gggcgagcccgcgaagaagccagcaccgcaaaacctgctggaatccatcccctgcaaaatctggcataacacttgctcaagccaagccattctcctatgaacccccgatggacgacggattattGGGGTTATGCCGAGATAAGGCaaa                                                                                                                              <  1:52171‑M1/24‑1 (MQ=255)                           gCTTTGTTCCAGGCGGTGCCGGCGGCCGGTCAAGCTGGCTGCAGTCGAAGTGGTGACTTCGTCGCTACTGTCGGGAGGAAAGGGTGAGGCAGAAAAATCGATCATTCACGCGGGGTTATACCGGGGTTATGCCGAGATAAGGCAAAAAt                                                                                                                           <  1:90629/149‑1 (MQ=255)                               tGTTCCAGGCGGTGCCGGCGGCCGGTCAAGCTGGCTGCAGTCGAAGTGGTGACTTCGTCGCTACTTTCGGGAGGAAAGGGTGAGGCAGAAAAATCGATCATTCACGAGGGGTTATAGCGGGTTTATTCCGAGATAAGTCAAAAATTAg                                                                                                                        <  2:226369/148‑1 (MQ=255)                               tGTTCCAGGCGGTGCCGGCGGCCGGTCAAGCTGGCTGCAGTCGAAGTGGTGACTTCGTCGCTACTGTCGGGAGGAAAGGGTGAGGCAGAAAAATCGATCATTCACGCGGGGTTATACCGGGGTTATGCCGAGATAAGGCAAAAATTa                                                                                                                         <  1:7643/147‑1 (MQ=255)                               tGTTCCAGGCGGTGCCGGCGGCCGGTCAAGCTGGCTGCAGTCGAAGTGGTGACTTCGTCGCTACTGTCGGGAGGAAAGGGTGAGGCAGAAAAATCGATCATTCACGCGGGGTTATACCGGGGTTATGCCGAGATAAGGCAAAAATTAg                                                                                                                        <  3:327199/148‑1 (MQ=255)                                 ttCCAGGCGGTGCCGGCGGCCGGTCAAGCTGGCTGCAGTCGAAGTGGTGACTTCGTCGCTACTGTCGGGAGGAAAGGGTGAGGCAGAAAAATCGATCATTCACGCGGGGTTATACCGGGGTTATGCCGAGATAAGGCAAAAATTAGGa                                                                                                                      >  5:246610/1‑148 (MQ=255)                                    cAGGCGGTGCCGGCGGCCGGTCAAGCTGGCTGCAGTCGAAGTGGTGACTTCGTCGCTACTGTCGGGAGGAAAGGGTGAGGCAGAAAAATCGATCATTCACGCGGGGTTATACCGGGGTTATGCCGAGATAAGGc                                                                                                                                 <  4:74726/134‑1 (MQ=255)                                    cAGGCGGTGCCGGCGGCCGGTCAAGCTGGCTGCAGTCGAAGTGGTGACTTCGTCGCTACTGTCGGGAGGAAAGGGTGAGGCAGAAAAATCGATCATTCACGCGGGGTTATACCGGGGTTATGCCGAGATAAGGc                                                                                                                                 >  3:74726/1‑134 (MQ=255)                                     aGGCGGTGCCGGCGGCCGGTCAAGCTGGCTGCAGTCGAAGTGGTGACTTCGTCGCTACTGTCGGGAGGAAAGGGTGAGGCAGAAAAATCGATCATTCACGCGGGGTTATACCGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTc                                                                                                                 >  2:346471/1‑149 (MQ=255)                                     aGGCGGTGCCGGCGGCCGGTCAAGCTGGCTGCAGTCGAAGTGGTGACTTCGTCGCTACTGTCGGGAGGAAAGGGTGAGGCAGAAAAATCGATCATTCACGCGGGGTTATACCGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTc                                                                                                                 >  3:74341/1‑149 (MQ=255)                                        gaagccagcaccgcaaaacctgctggaatccatcccctgcaaaatctggcataacacttgctcaagccaagccattctcctttgaacccccgatggacgacggattattGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGtt                                                                                                              >  7:105091‑M1/110‑149 (MQ=255)                                        cGGTGCCGGCGGCCGGTCAAGCTGGCTGCAGTCGAAGTGGTGACTTCGTCGCTACTGTCGGGAGGAAAGGGTGAGGCAGAAAAATCGATCATTCACGCGGGGTTATACCGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGtt                                                                                                              <  1:346471/149‑1 (MQ=255)                                        cGGTGCCGGCGGCCGGTCAAGCTGGCTGCAGTCGAAGTGGTGACTTCGTCGCTACTGTCGGGAGGAAAGGGTGAGGCAGAAAAATCGATCATTCACGCGGGGTTATACCGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGtt                                                                                                              <  7:299758/149‑1 (MQ=255)                                         ggTGCCGGCGGCCGGTCAAGCTGGCTGCAGTCGAAGTGGTGACTTCGTCGCTACTGTCGGGAGGAAAGGGTGAGGCGGAAAAATCGATCATTCACGCGGGGTTATACCGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTc                                                                                                             <  7:273784/149‑1 (MQ=255)                                          gTGCCGGCGGCCGGTCAAGCTGGCTGCAGTCGAAGTGGTGACTTCGTCGCTACTGTCGGGAGGAAAGGTTGAGGCAGAAAAATCGATCATTCACGCGGGGTTATACCGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCt                                                                                                            <  6:258056/149‑1 (MQ=255)                                            ccagcaccgcaaaacctgctggaatccatcccctgcaaaatctggcataacacttgctcaagccaagccattctcctttgaacccccgatggacgacggattattGGGGTTATGCCGAGATAAGGCAAAAATTTGGACATTCGTTCTg                                                                                                           <  3:372415‑M1/43‑1 (MQ=255)                                             cagcaccgcaaaacctgctggaatccatcccctgcaaaatctggcataacacttgctcaagccaagccattctcctttgaacccccgatggacgacggattattGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGt                                                                                                          <  2:294987‑M1/44‑1 (MQ=255)                                               ggcggcCGGTCAAGCTGGCTGCAGTCGAAGTGGTGACTTCGTCGCTACTGTCGGGAGGAAAGGGTGAGGCAGAAAAATCGATCATTCACGCGGGGTTATACCGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTaaa                                                                                                       <  8:139108/149‑1 (MQ=255)                                                   gcCGGTCAAGCTGGCTGCAGTCGAAGTGGTGACTTCGTCGCTACTGTCGGGAGGAAAGGGTGAGGCAGAAAAATCGATCATTCACGCGGGGTTATACCGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAatata                                                                                                   <  1:34891/149‑1 (MQ=255)                                                     cGGTCAAGCTGGCTGCAGTCGAAGTGGTGACTTCGTCGCTACTGTCGGGAGGAAAGGGTGAGGCAGAAAAATCGATCATTCACGCGGGGTTATACCGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATg                                                                                                 <  7:225762/149‑1 (MQ=255)                                                       gTCAAGCTGGCTGCAGTCGAAGTGGTGACTTCGTCGCTACTGTCGGGAGGAAAGGGTGAGGCAGAAAAATCGATCATTCACGCGGGGTTATACCGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGAt                                                                                               >  2:92626/1‑149 (MQ=255)                                                        tCAAGCTGGCTGCAGTCGAAGTGGTGACTTCGTCGCTACTGTCGGGAGGAAAGGGTGAGGCAGAAAAATCGATCATTCACGCGGGGTTATACCGGGGTTATGCCGAGATaa                                                                                                                                    <  5:13865/111‑1 (MQ=255)                                                        tCAAGCTGGCTGCAGTCGAAGTGGTGACTTCGTCGCTACTGTCGGGAGGAAAGGGTGAGGCAGAAAAATCGATCATTCACGCGGGGTTATACCGGGGTTATGCCGAGATaa                                                                                                                                    >  6:13865/1‑111 (MQ=255)                                                        tCAAGCTGGCTGCAGTCGAAGTGGTGACTTCGTCGCTACTGTCGGGAGGAAAGGGTGAGGCAGAAAAATCGATCATTCACGCGGGGTTATACCGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTGTGTAAATATATGAtt                                                                                              >  5:311143/1‑149 (MQ=255)                                                           aGCTGGCTGCAGTCGAAGTGGTGACTTCGTCGCTACTGTCGGGAGGAAAGGGTGAGGCAGAAAAATCGATCATTCACGCGGGGTTATACCGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTa                                                                                            >  6:153757/1‑148 (MQ=255)                                                            tgctggaatccatcccctgcaaaatctggcataacacttgctcaagccaagccattctcctttgaacccccgatggacgacggattattGGGGTTATGCCGAGATAAGGCAAAAATTa                                                                                                                         <  8:300881‑M1/29‑1 (MQ=255)                                                            tgctggaatccatcccctgcaaaatctggcataacacttgctcaagccaagccattctcctttgaacccccgatggacgacggattattGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAAGATATGATTTaa                                                                                           <  4:132317‑M1/59‑1 (MQ=255)                                                             ctggctgCAGTCGAAGTGGTGACTTCGTCGCTACTGTCGGGAGGAAAGGGTGAGGCAGAAAAATCGATCATTCACGCGGGGTTATACCGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTaaaa                                                                                         <  1:138366/149‑1 (MQ=255)                                                                 gaatccatcccctgcaaaatctggcataacacttgctcaagccaagccattctcctttgaacccccgatggacgacggattattGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGtt                                                                                     >  1:370294‑M1/85‑149 (MQ=255)                                                                       tCGAAGTGGTGACTTCGTCGCTACTGTCGGGAGGAAAGGGTGAGGCAGAAAAATCGATCATTCACGCGGGGTTATACCGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTc                                                                                 >  1:201721/1‑147 (MQ=255)                                                                       tCGAAGTGGTGACTTCGTCGCTACTGTCGGGAGGAAAGGGTGAGGCAGAAAAATCGATCATTCACGCGGGGTTATACCGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTc                                                                                 >  3:77692/1‑147 (MQ=255)                                                                       atacccttaaaaatctggcataacacttgctcaagcaaagccattctcctttgaaccccctatggtagacggattattGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCga                                                                               >  5:29289‑M1/79‑149 (MQ=255)                                                                        cGAAGTGGTGACTTCGTCGCTACTGTCGGGAGGAAAGGGTGAGGCAGAAAAATCGATCATTCACGCGGGGTTATACCGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCga                                                                               <  5:67248/148‑1 (MQ=255)                                                                         gAAGTGGTGACTTCGTCGCTACTGTCGGGAGGAAAGGGTGAGGCAGAAAAATCGATCATTCACGCGGGGTTATACCGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCgaga                                                                             <  6:26359/149‑1 (MQ=255)                                                                            gtggtgACTTCGTCGCTACTGTCGGGAGGAAAGGGTGAGGCAGAAAAATCGATCATTCACGCGGGGTTATACCGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGc                                                                          <  6:246610/149‑1 (MQ=255)                                                                                      cgtcgCTACTGTCTGGAGGAAAGGGTGAGGCAGAAAAATCGATCATTCACTCGGGGTTATACCGGGGTTATGCCGATATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTg                                                                 <  4:213031/148‑1 (MQ=255)                                                                                          gCTACTGTCGGGAGGAAAGGGTGAGGCAGAAAAATCGATCATTCACGCGGGGTTATACCGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGt                                                            >  8:315560/1‑149 (MQ=255)                                                                                          ataacacttgctcaagccaagccattctcctttgaacccccgatggacgacggattattGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTgg                                                             <  7:281518‑M1/89‑1 (MQ=255)                                                                                                   gggAGGAAAGGGCTAGGTAGATAAATCGCTCATTCACGCGGGGTTATACCGGGGGTATGCGGAGATAAGGCAATAATTAGGACATTCGTTCTGTATATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTGATCCAcc                                                    <  6:181692/148‑1 (MQ=255)                                                                                                     tcaagccaagccattctcctttgaacccccgatggacgacggattattGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCAt                                                         <  1:388194‑M1/93‑1 (MQ=255)                                                                                                     tcaagccaagccattctcctttgaacccccgatggacgacggattattGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCAt                                                         >  2:388194‑M1/49‑141 (MQ=255)                                                                                                     gaggaAAGGGGGAGGCAGAAAAATCGATCATTCACGCGGGGTTATACCGGCGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTc                                                 <  4:304626/149‑1 (MQ=255)                                                                                                       aagccaagccattctcctttgaacccccgatggacgacggattattGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTg                                               <  4:65476‑M1/103‑1 (MQ=255)                                                                                                             ggTGAGGCAGAAAAATCGATCATTCACGCGGGGTTATACCGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTGGCTAGc                                         >  4:324163/1‑149 (MQ=255)                                                                                                              gccattctcctatgaacccccgatggacgacggattattGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTGGCTAGcc                                        >  2:52171‑M1/40‑149 (MQ=255)                                                                                                              gTGAGGCAGAAAAATCGATCATTCACGCGGGGTTATACCGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTGGCTAGcc                                        <  5:302432/149‑1 (MQ=255)                                                                                                                   gCAGAAAAATCGATCATTCACGCGGGGTTATACCGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACAGTCTGGATAGCCGTCTa                                   >  7:293904/1‑149 (MQ=255)                                                                                                                     aGAAAAATCGATCATTCACGCGGGGTTATACCGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTGGCTAGCCGTCTAt                                  >  6:294840/1‑148 (MQ=255)                                                                                                                      gAAAAATCGATCATTCACGCGGGGTTATACCGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTGGCTAGCCGTCTATGc                                <  5:153757/149‑1 (MQ=255)                                                                                                                           gaacccccgatggacgacggattattGGGGTTATGCCGAGATAAGGCAAAAATTTGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTGGCTAGCCGTCTATGCTGAt                            >  4:372415‑M1/27‑148 (MQ=255)                                                                                                                            tCGATCATTCACGCGGGGTTATACCGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTGGCTAGCCGTCTATGCTGATGc                          >  4:156096/1‑149 (MQ=255)                                                                                                                              cccccgatggacgacggattattGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTGGCTAGCCGTCTATGCTGATGCtt                        <  3:333468‑M1/126‑1 (MQ=255)                                                                                                                                  aTTCACGCGGGGTTATACCGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTGGCTAGCCGTCTATGCTGATGCTTTTGc                    <  4:74341/149‑1 (MQ=255)                                                                                                                                  aTTCACGCGGGGTTATACCGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTGGCTAGCCGTCTATGCTGATGCTTTTGc                    <  1:92626/149‑1 (MQ=255)                                                                                                                                    tCACGCGGGGTTATACCGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTaaa                                                                                                       >  6:332746/1‑64 (MQ=255)                                                                                                                                    tCACGCGGGGTTATACCGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTaaa                                                                                                       <  5:332746/64‑1 (MQ=255)                                                                                                                                            ggTTATACCGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTGGCTAGCCGTCTATGCTGATGCTTTTGCCTCGCTTggg          <  5:294840/149‑1 (MQ=255)                                                                                                                                                ataCCGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTGGCTAGCCGTCTATGCTGATGCTTTTGCCTCGCTTGGGGGa       <  3:324163/148‑1 (MQ=255)                                                                                                                                                     GGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGGTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTGGCTAGCCGTCTATGCTGATGCTTTTGCCTCGCTTGGGGGATgtgt  <  7:127195‑M1/148‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                    ATGAAAGTCGTTCCTTGACGTGAGGGGCTTTGTTCCAGGCGGTGCCGGCGGCCGGTCAAGCTGGCTGCAGTCGAAGTGGTGACTTCGTCGCTACTGTCGGGAGGAAAGGGTGAGGCAGAAAAATCGATCATTCACGCGGGGTTATACCGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTGGCTAGCCGTCTATGCTGATGCTTTTGCCTCGCTTGGGGGATGTGT  >  NC_002947/3366405‑3366700

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.