| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3997287 | 45 (0.710) | 3 (0.050) | 3/252 | NT | 6.4% | intergenic (‑125/‑28) | PP_3525/PP_3526 | hypothetical protein/AraC family transcriptional regulator |
| ? | NC_002947 | = 3997310 | 45 (0.750) | intergenic (‑148/‑5) | PP_3525/PP_3526 | hypothetical protein/AraC family transcriptional regulator | |||||
CAGCGGCATATCTCATCAGGCGCATCCTCAATGACGGGAGGTCAGCATAGCGGTAAAGCACCAGGACAGGCTGGTTTGCCTGAACACGACCTGTAATACGACACAGCCACCGGGGAGATTGTCTTTCCTCCGGGCACCGTCCACACTCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3997138‑3997287‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cactctgAACTCCGCTTCCTGGCTGGCCCGCAGAGTGTGGACGGTGCCCGGAGGAAAGACAATCTCCCCGGTGGCTGTGTCGTATTACAGGTCGTGTTCAGGCAAACCAGCCTGTCCTGGTGCTTTACCGCTATGCTGACCTCCCGTCATTGAGG < NC_002947/3997310‑3997163 CAGCGGCATATCTCATCAGGCGCATCCTCAATGACGGGAGGTCAGCATAGCGGTAAAGCACCAGGACAGGCTGGTTTGCCTGAACACGACCTGTAATACGACACAGCCACCGGGGAGATTGTCTTTCCTCCGGGCACCGTCCACACT < 4:201715/147‑1 GGGAGGTCAGCATAGCGGTAAAGCACCAGGACAGGCTGGTTTGCCTGAACACGACCTGTAATACGACACAGCCACCGGGGAGATTGTCTTTCCTCCGGGCACCGTCCACACTCTGAACTCCGCTTCCTGGCTGGCCCGCAGAGTGTGGA < 8:333263/149‑1 AGCACCAGGACAGGCTGGTTTGCCTGAACACGACCTGTAATACGACACAGCCACCGGGGAGATTGTCTTTCCTCCGGGCACCGTCCACACTCTGAACTCCGCTTCCTGGCTGGCCCGCAGAGTGT < 5:388402/125‑1 AGCACCAGGACAGGCTGGTTTGCCTGAACACGACCTGTAATACGACACAGCCACCGGGGAGATTGTCTTTCCTCCGGGCACCGTCCACACTCTGAACTCCGCTTCCTGGCTGGCCCGCAGAGTGT > 6:388402/1‑125 CACTCTGAACTCCGCTTCCTGGCTGGCCCGCAGAGTGTGGACGGTGCCCGGAGGAAAGACAATCTCCCCGGTGGCTGTGTCGTATTACAGGTCGTGTTCAGGCAAACCAGCCTGTCCTGGTGCTTTACCGCTATGCTGACCTCCCGTCA < 6:202363/149‑1 TCTGAACTCCGCTTCCTGGCTGGCCCGCAGAGTGTGGACGGTGCCCGGAGGAAAGACAATCTCCCCGGTGGCTGTGTCGTATTACAGGTCGTGTTCAGGCAACCCAGCCTGTCCTGGTGCTTTACCGCTATGCTGACCTCCCGTCATT > 6:135346/1‑148 TCTGAACTCCGCTTCCTGGCTGGCCCGCAGAGTGTGGACGGTGCCCGGAGGAAAGACAATCTCCCCGGTGGCTGTGTCGTATTACAGGTCGTGTTCAGGCAAACCAGCCTGTCCTGGTGCTTTACCGCTATGCTGACCTCCCGTCATTG > 7:3518/1‑149 TGAACTCCGCTTCCTGGCTGGCCCGCAGAGTGTGGACGGTGCCCGGAGGAAAGACAATCTCCCCGGTGGCTGTGTCGTATTACAGGTCGTGTTCAGGCAAACCAGCCTGTCCTGGTGCTTTACCGCTATGCTGACCTCCCGTCATTGAG > 7:105792/1‑149 TGAACTCCGCTTCCTGGCTGGCCCGCAGAGTGTGGACGGTGCCCGGAGGAAAGACAATCTCCCCGGTGGCTGTGTCGTATTACAGGTCGTGTTCAGGCAAACCAGCCTGTCCTGGTGCTTTACCGCTATGCTGAC > 7:318163/1‑135 TGAACTCCGCTTCCTGGCTGGCCCGCAGAGTGTGGACGGTGCCCGGAGGAAAGACAATCTCCCCGGTGGCTGTGTCGTATTACAGGTCGTGTTCAGGCAAACCAGCCTGTCCTGGTGCTTTACCGCTATGCTGAC < 8:318163/135‑1 GAACTCCGCTTCCTGGCTGGCCAGCAGAGTGTGGACGGTGCCCGGAGGATAGACAATCTCCCCGGTGGCTGTGTCGTATTACAGGTCGTGTTCAGGCAAACCAGCCTGTCCTGGTGCTTTACCGGTATGCTGACCTCCCGTCAGTGAGG > 4:195569/1‑149 CAGCGGCATATCTCATCAGGCGCATCCTCAATGACGGGAGGTCAGCATAGCGGTAAAGCACCAGGACAGGCTGGTTTGCCTGAACACGACCTGTAATACGACACAGCCACCGGGGAGATTGTCTTTCCTCCGGGCACCGTCCACACTCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3997138‑3997287‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cactctgAACTCCGCTTCCTGGCTGGCCCGCAGAGTGTGGACGGTGCCCGGAGGAAAGACAATCTCCCCGGTGGCTGTGTCGTATTACAGGTCGTGTTCAGGCAAACCAGCCTGTCCTGGTGCTTTACCGCTATGCTGACCTCCCGTCATTGAGG < NC_002947/3997310‑3997163 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |