| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4140591 = | 49 (0.770) | 4 (0.070) | 4/246 | NT | 8.8% | coding (219/597 nt) | PP_5609 | hypothetical protein |
| ? | NC_002947 | 4140641 = | 38 (0.650) | coding (269/597 nt) | PP_5609 | hypothetical protein | |||||
TTGTTGGTGAAGCTCAGGTAGCTCTTGGCCTGTACCGCCTCGCGGTAGTGGTTGCCGAAGCGCAGGGTATGGATCACGGCCGAGGCGTGCTCGATTTCGCCATCGGCGCCGACGACGGCGGCCTTACCGTAGGCCTCGATCTTGTCGGCGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4140743‑4140591‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcggcgccgATGGCGAAATCGAGCACGCCTCGGCCGTGATCCATACCCTGCGCTTCGGCAACCACTACCGCGAGGCGGTACAGGCCAAGAGCTA‑CCTGAGCTTCACCAACAAGCGCGGCGGCCCAGGCACTTCGATCCAGATCCCGA > NC_002947/4140641‑4140778 TTGTTGGTGAAGCTCAGGTAGCTCTTGGCCTGTACCGCCTCGCGGTAGTGGTTGCCGAAGCGCAGGGTATGGATCACGGCCGAGGCGTGCTCGATTTCGCCATCGGCGCCGACGACGGCGGCCTTACCGTAGGCCTCGATCTTGTCGGC > 3:84165/1‑149 GCCATCGGCGCCGACGACGGCGGCCTTACCGTAGGCCTCGATCTTGTCGGCGCCGATGGCGAAATCGAGCACGTCTCGGCCGTGATCCATACCCTGCGCTTCGGCAACCACTACCGCGAGGCGGTACAGGCCAAGAGCTA‑CCTGA > 5:274885/1‑145 GCCATCGGCGCCGACGACGGCGGCCTTACCGTAGGCCTCGATCTTGTCGGCGCCGATGGCGAAATCGAGCACGTCTCGGCCGTGATCCATACCCTGCGCTTCGGCAACCACTACCGCGAGGCGGTACAGGCCAAGAGCTA‑CCTGA < 6:274885/145‑1 ATCGGCGCCGACGACGGCGGCCTTACCGTAGGCCTCGATCTTGTCGGCGCCGATGGCGAAATCGAGCACGCCTCGGCCGTGATCCATACCCTGCGCTTCGGCAACCACTACCGCGAGGCGGTACAGGCCAAGAGCTA‑CCTGAGCTTCAC > 4:315474/1‑149 CTTACCGTAGGCCTCGATCTTGTCGGCGCCGATGGCGAAATCGAGCACGCCTCGGCCGTGATCCATACCCTGCGCTTCGGCAACCACTACCGCGAGGCGGTACAGGCCAAGAGCTA‑CCTGAGCTTCACCAACAAGCGCGGCGGCCCAGG < 3:315474/149‑1 GTCGGCGCCGATGGCGAAATCGAGCACGCCTCGGCCGTGATCCATACCCTGCGCTTCGGCAACCACTACCGCGAGGCGGTACAGGCCAAGAGCTA‑CCTGAGCTTCCCCAACAAGCCCGGCGGCCCAGGCACTGCGATCCAGATCCCGA > 2:294511/1‑148 GTCGGCGCCGATGGCGAAAACGAGCAAGCCTCGGCCGTGATCCATACCCTGCGCTTCGGCAACCACTAACGCGAGGCGGTACAGGCCAAGAGCTACCCTGAGCTTCACCAACAAGCGCGGCGGCCCAGGCACTTCGATCCAGATCCCGA < 1:294511/149‑1 TTGTTGGTGAAGCTCAGGTAGCTCTTGGCCTGTACCGCCTCGCGGTAGTGGTTGCCGAAGCGCAGGGTATGGATCACGGCCGAGGCGTGCTCGATTTCGCCATCGGCGCCGACGACGGCGGCCTTACCGTAGGCCTCGATCTTGTCGGCGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4140743‑4140591‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcggcgccgATGGCGAAATCGAGCACGCCTCGGCCGTGATCCATACCCTGCGCTTCGGCAACCACTACCGCGAGGCGGTACAGGCCAAGAGCTA‑CCTGAGCTTCACCAACAAGCGCGGCGGCCCAGGCACTTCGATCCAGATCCCGA > NC_002947/4140641‑4140778 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |