New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4140591 =	49 (0.770)	4 (0.070)	4/246	NT	8.8%	coding (219/597 nt)	PP_5609	hypothetical protein
	?	NC_002947	4140641 =	38 (0.650)					coding (269/597 nt)	PP_5609	hypothetical protein

CCGGTCGCGGTTTCGTTGAAGATCTGAAGCCGGAAATTCGCGCCAACTGCTCGGAGCTGGGTGCCCTGATGGTCGAGCGCCTGACTGCTGCCATTGGCGGCGCCGACAAGATCGAGGCCTACGGTAAGGCCGCCGTCGTCGGCGCCGATGGCGAAATCGAGCACGCCTCGGCCGTGATCCATACCCTGCGCTTCGGCAACCACTACCGCGAGGCGGTACAGGCCAAGAGCTA‑CCTGAGCTTCACCAACAAGCGCGGCGGCCCAGGCACTTCGATCCAGATCCCGA  >  NC_002947/4140494‑4140778                                                                                                                                                    |                                                                                                                                           gtgaagctcaggtagctcttggcctgtaccgcctcgcggtagtggttgccgaagcgcagggtatggatcacggccgaggcgtgctcgatttcgccatCGGCGCCGACAAGATCGAGGCCTACGGTAAGGCCGCCGTCGTCGGCGCCGAt                                                                                                                                           >  4:315474‑M1/98‑149 (MQ=255)    gTCGCGGTTTCGTTGAAGATCTGAAGCCGGAAATTCGCGCCAACTGCTCGGAGCTGGGTGCCCTGATGGTCGAGCGCCTGACTGCTGCCATTGGCGGCGCCGACAAGATCGAGGCCTACGGTAAGGCCGCCGTCGTCGGCGCCGATg                                                                                                                                          >  4:156803/1‑147 (MQ=255)    gTCGCGGTTTCGTTGAAGATCTGAAGCCGGAAATTCGCGCCAACTGCTCGGAGCTGGGTGCCCTGATGGTCGAGCGCCTGACTGCTGCCATTGGCGGCGCCGACAAGATCGAGGCCTACGGTAAGGCCGCCGTCGTCGGCGCCGATg                                                                                                                                          <  3:156803/147‑1 (MQ=255)       gcgGTTTCGTTGAAGATCTGAAGCCGGAAATTCGCGCCAACTGCTCGGAGCTGGGTGCCCTGATGGTCGAGCGCCTGACTGCTGCCATTGGCGGCGCCGACAAGATCGAGGCCTACGGTAAGGCCGCCGTCGTCGGCGCCGATGGCGa                                                                                                                                      >  3:7096/1‑148 (MQ=255)        tcaggtagctcttggcctgtaccgcctcgcggtagtggttgccgaagcgcagggtatggatcacggccgagacgtgctcgatttcgccatCGGCGCCGACAAGATCGAGGCCTACGGTAAGGCCGCCGTCGTCGGCGCCGATGGc                                                                                                                                        <  6:274885‑M1/55‑1 (MQ=255)        tcaggtagctcttggcctgtaccgcctcgcggtagtggttgccgaagcgcagggtatggatcacggccgagacgtgctcgatttcgccatCGGCGCCGACAAGATCGAGGCCTACGGTAAGGCCGCCGTCGTCGGCGCCGATGGc                                                                                                                                        >  5:274885‑M1/91‑145 (MQ=255)             tCGTTTAAGATCTGAAGCCGGAAATTCTCGCCAACTGCTCGGAGCTGGGTGCCCTGATGGTCGAGCGCCTGACTGCTGCCATTGGCGGCGCCGACAAGATCGAGGCCTACGGTAAGGCCGCCGTCGTCGGCGCCGATGGCGAAATCGa                                                                                                                                <  6:45737/148‑1 (MQ=255)                ttGAAGATCTGAAGCCGGAAATTCGCGCCAACTGCTCGGAGCTGGGTGCCCTGATGGTCGAGCGCCTGACTGCTGCCATTGGCGGCGCCGACAAGATCGAGGCCTACGGTAAGGCCGCCGTCGTCGGCGCCGATGGCGAAATCGAGCAc                                                                                                                            <  6:185624/149‑1 (MQ=255)                ttGAAGATCTGAAGCCGGAAATTCGCGCCAACTGCTCGGAGCTGGGTGCCCTGATGGTCGAGCGCCTGACTGCTGCCATTGGCGGCGCCGACAAGATCGAGGCCTACGGTAAGGCCGCCGTCGTCGGCGCCGATGGCGAAATCGAGCAc                                                                                                                            >  2:22799/1‑149 (MQ=255)                          gAAGCCGGAAATTCGCGCCAACTGCTCGGAGCTGGGTGCCCTGATGGTCGAGCGCCTGACTGCTGCCATTGGCGGCGCCGACAAGATCGAGGCCTACGGTAAGGCCGCCGTCGTCGGCGCCGATGGCGAAATCGAGCACGCCTCGGCCg                                                                                                                  >  8:226737/1‑149 (MQ=255)                             gCCGGAAATTCGCGCCAACTGCTCGGAGCTGGGTGCCCTGATGGTCGAGCGCCTGACTGCTGCCATTGGCGGCGCCGACAAGATCGAGGCCTACGGTAAGGCCGCCGTCGTCGGCGCCGATGGCGAAATCGAGCACGCCTCGGCCGTGa                                                                                                               <  1:22799/149‑1 (MQ=255)                              ccGGAAATTCGCGCCAACTGCTCGGAGCTGGGTGCCCTGATGGTCGAGCGCCTGACTGCTGCCATTGGCGGCGCCGACAAGATCGAGGCCTACGGTAAGGCCGCCGTCGTCGGCGCCGATGGCGAAATCGAGCACGCCTCGGCCGTGAt                                                                                                              <  4:7096/149‑1 (MQ=255)                               cGGAAATTCGCGGCAACTGCTCGGAGGTGGGTGCCGTGCTTGTCGAGCGCCTGACTGCTGGCATTGGCGGCGCCGACAAGATCGAGGCCTACGGTAAGGCCGCCGTCGTCGGCGCCGATGGCGAAATCGAGCACGCCTCGGCCGTGATc                                                                                                             <  7:268268/149‑1 (MQ=255)                                     ttCGCGCCAACTGCTCGGAGCTGGGTGCCCTGATGGTCGAGCGCCTGACTGCTGCCATTGGCGGCGCCGACAAGATCGAGGCCTACGGTAAGGCCGCCGTCGTCGGCGCCGATGGCGAAATCGAGCACGCCTCGGCCGTGATCCATAcc                                                                                                       <  7:226737/149‑1 (MQ=255)                                                tGCTCGGAGCTGGGTGCCCTGATGGTCGAGCGCCTGACTGCTGCCATTGGCGGCGCCGACAAGATCGAGGCCTACGGTAAGGCCGCCGTCGTCGGCGCCGATGGCGAAATCGAGCACGCCTCGGCCGTGATCCATACCCTGCGCTTCgg                                                                                            >  2:260237/1‑149 (MQ=255)                                                  cTCGGAGCTGGGTGCCCTGATGGTCGAGCGCCTGACTGCTGCCATTGGCGGCGCCGACAAGATCGAGGCCTACGGTAAGGCCGCCGTCGTCGGCGCCGATGGCGAAATCGAGCACGCCTCGGCCGTGATCCATACCCTGCGCTTCgg                                                                                            <  3:132735/147‑1 (MQ=255)                                                  cTCGGAGCTGGGTGCCCTGATGGTCGAGCGCCTGACTGCTGCCATTGGCGGCGCCGACAAGATCGAGGCCTACGGTAAGGCCGCCGTCGTCGGCGCCGATGGCGAAATCGAGCACGCCTCGGCCGTGATCCATACCCTGCGCTTCgg                                                                                            <  4:154964/147‑1 (MQ=255)                                                  cTCGGAGCTGGGTGCCCTGATGGTCGAGCGCCTGACTGCTGCCATTGGCGGCGCCGACAAGATCGAGGCCTACGGTAAGGCCGCCGTCGTCGGCGCCGATGGCGAAATCGAGCACGCCTCGGCCGTGATCCATACCCTGCGCTTCGGc                                                                                           >  1:145129/1‑148 (MQ=255)                                                   tCGGAGCTGGGTGCCCTGATGGTCGAGCGCCTGACTGCTGCCATTGGCGGCGCCGACAAGATCGAGGCCTACGGTAAGGCCGCCGTCGTCGGCGCCGATGGCGAAATCGAGCACGCCTCGGCCGTGATCCATACCCTGCGCTTCGGCaa                                                                                         >  3:329983/1‑149 (MQ=255)                                                    cGGAGCTGGGTGCCCTGATGGTCGAGCGCCTGACTGCTGCCATTGGCGGCGCCGACAAGATCGAGGCCTACGGTAAGGCCGCCGTCGTCGGCGCCGATGGCGAAATCGAGCACGCCTCGGCCGTGATCCATACCCTGCGCTTCGGCAAc                                                                                        >  7:129367/1‑149 (MQ=255)                                                        gCTGGGTGCCCTGATGGTCGAGCGCCTGACTGCTGCCATTGGCGGCGCCGACAAGATCGAGGCCTACGGTAAGGCCGCCGTCGTCGGCGCCGATGGCGAAATCGAGCACGCCTCGGCCGTGATCCATACCCTGCGCTTCGGCAACCAc                                                                                     <  8:129367/148‑1 (MQ=255)                                                            ggTGCCCTGATGGTCGAGCGCCTGACTGCTGCCATTGGCGGCGCCGACAAGATCGAGGCCTACGGTAAGGCCGCCGTCGTCGGCGCCGATGGCGAAATCGAGCACGCCTCGGCCGTGATCCATACCCTGCGCTTCGGCAACCACTAc                                                                                  <  1:377488/147‑1 (MQ=255)                                                                cccTGATGGTCGAGCGCCTGACTGCCGCCATTGGCGGCGCCGACAAGATCGAGGCCTACGGTAAGGCCGCCGTCGTCGGCGCCGATGGCGAAATCGAGCACGCCTCGGCCGTGATCCATACCCTGCGCTTCGGCAACCACTACCGCGAg                                                                            <  6:260079/149‑1 (MQ=255)                                                                      tGGTCGAGCGCCTGACTGCTGCCATTGGCGGCGCCGACAAGATCGAGGCCTACGGTAAGGCCGCCGTCGTCGGCGCCGATGGCGAAATCGAGCACGCCTCGGCCGTGATCCATACCCTGCGCTTCGGCAACCACTACCGCGAGGCGGTa                                                                      <  8:31419/149‑1 (MQ=255)                                                                        gTCGAGCGCCTGACTGCTGCCATTGGCGGCGCCGACAAGATCGAGGCCTACGGTAAGGCCGCCGTCGTCGGCGCCGATGGCGAAATCGAGCACGCCTCGGCCGTGATCCATACCCTGCGCTTCGGCAACCACTACCGCGAGGCGGTa                                                                      <  4:292941/147‑1 (MQ=255)                                                                                ccTGACTGCTGCCATTGGCGGCGCCGACAAGATCGAGGCCTACGGTAAGGCCGCCGTCGTCGGCGCCGATGGCGAAATCGAGCACGCCTCGGCCGTGATCCATACCCTGCGCTTCGGCAACCACTACCGCGAg                                                                            <  4:100675/133‑1 (MQ=255)                                                                                ccTGACTGCTGCCATTGGCGGCGCCGACAAGATCGAGGCCTACGGTAAGGCCGCCGTCGTCGGCGCCGATGGCGAAATCGAGCACGCCTCGGCCGTGATCCATACCCTGCGCTTCGGCAACCACTACCGCGAg                                                                            >  3:100675/1‑133 (MQ=255)                                                                                ccTGACTGCTGCCATTGGCGGCGCCGACAAGATCGAGGCCTACGGTAAGGCCGCCGTCGTCGGCGCCGATGGCGAAATCGAGCACGCCTCGGCCGTGATCCATACCCTGCGCTTCGGCAACCACTACCGCGAGGCGGTACAGGCCAaga                                                            <  2:145129/149‑1 (MQ=255)                                                                                 cTGACTGCTGCCATTGGCGGCGCCGACAAGATCGAGGCCTACGGTAAGGCCGCCGTCGTCGGCGCCGATGGCGAAATCGAGCACGCCTCGGCCGTGATCCATACCCTGCGCTTCGGCAACCACTACCGCGAGGCGGTACAGGCCAagag                                                           >  3:182280/1‑149 (MQ=255)                                                                                 cTGACTGCTGCCATTGGCGGCGCCGACAAGATCGAGGCCTACGGTAAGGCCGCCGTCGTCGGCGCCGATGGCGAAATCGAGCACGCCTCGGCCGTGATCCATACCCTGCGCTTCGGCAACCACTACCGCGAGGCGGTACAGGCCAagag                                                           >  6:61958/1‑149 (MQ=255)                                                                                        ctgcCATTGGCGGCGCCGACAAGATCGAGGCCTACGGTAAGGCCGCCGTCGTCGGCGCCGATGGCGAAATCGAGCACGCCTCGGCCGTGATCCATACCCTGCGCTTCGGCAACCACTACCGCGAGGCGGTACAGGCCAAGAGCTA‑cc                                                     <  5:353313/147‑1 (MQ=255)                                                                                        ctgcCATTGGCGGCGCCGACAAGATCGAGGCCTACGGTAAGGCCGCCGTCGTCGGCGCCGATGGCGAAATCGAGCACGCCTCGGCCGTGATCCATACCCTGCGCTTCGGCAACCACTACCGCGAGGCGGTACAGGCCAAGAGCTA‑CCt                                                    >  7:160286/1‑148 (MQ=255)                                                                                         tgcCATTGGCGGCGCCGACAAGATCGAGGCCTACGGTAAGGCCGCCGTCGTCGGCGCCGATGGCGAAATCGAGCACGCCTCGGCCGTGATCCATACCCTGCGCTTCGGCAACCACTACCGCGAGGCGGTACAGGCCAAGAGCTA‑CCt                                                    >  6:171495/1‑147 (MQ=255)                                                                                           ccATTGGCGGCGCCGACAAGATCGAGGCCTACGGTAAGGCCGCCGTCGTCGGCGCCGATGGCGAAATCGAGCACGCCTCGGCCGTGATCCATACCCTGCGCTTCGGCAACCACTACCGCGAGGCGGTACAGGCCAAGAGCTA‑CCTGAGc                                                >  3:144426/1‑149 (MQ=255)                                                                                           ccATTGGCGGCGCCGACAAGATCGAGGCCTACGGTAAGGCCGCCGTCGTCGGCGCCGATGGCGAAATCGAGCACGCCTCGGCCGTGATCCATACCCTGCGCTTCGGCAACCACTACCGCGAGGCGGTACAGGCCAAGAGCTA‑CCTGAGc                                                >  4:84165/1‑149 (MQ=255)                                                                                             gccatcggcgccgacgacggcggccttaccgtaggcctcgatcttgtcggcgccgATGGCGAAATCGAGCACGTCTCGGCCGTGATCCATACCCTGCGCTTCGGCAACCACTACCGCGAGGCGGTACAGGCCAAGAGCTA‑CCTGa                                                  >  5:274885‑M2/56‑145 (MQ=255)                                                                                             gccatcggcgccgacgacggcggccttaccgtaggcctcgatcttgtcggcgccgATGGCGAAATCGAGCACGTCTCGGCCGTGATCCATACCCTGCGCTTCGGCAACCACTACCGCGAGGCGGTACAGGCCAAGAGCTA‑CCTGa                                                  <  6:274885‑M2/90‑1 (MQ=255)                                                                                                atcggcgccgacgacggcggccttaccgtaggcctcgatcttgtcggcgccgATGGCGAAATCGAGCACGCCTCGGCCGTGATCCATACCCTGCGCTTCGGCAACCACTACCGCGAGGCGGTACAGGCCAAGAGCTA‑CCTGAGCTTCAc                                           >  4:315474‑M2/53‑149 (MQ=255)                                                                                                 gcggcgCCGACAAGATCGAGGCCTACGGTAAGGCCGCCGTCGTCGGCGCCGATGGCGAAATCGAGCACGCCTCGGCCGTGATCCATACCCTGCGCTTCGGCAACCACTACCGCGAGGCGGTACAGGCCAAGAGCTA‑CCTGAGCTTCAcc                                          <  7:161494/149‑1 (MQ=255)                                                                                                 gcggcgCCGACAAGATCGAGGCCTACGGTAAGGCCGCCGTCGTCGGCGCCGATGGCGAAATCGAGCACGCCTCGGCCGTGATCCATACCCTGCGCTTCGGCAACCACTACCGCGAGGCGGTACAGGCCAAGAGCTA‑CCTGAGCTTCAc                                           <  2:313335/148‑1 (MQ=255)                                                                                                      GCCGACAAGATCGAGGCCTACGGTAAGGCCGCCGTCGTCGGCGCCGATGGCGAAATCGAGCACGCCTCGGCCGTGATCCATACCCTGCGCTTCGGCAACCACTACCGCGAGGCGGTACAGGCCAAGAGCTA‑CCTGAGCTTCACcaacaa                                     >  3:84165‑M1/1‑149 (MQ=255)                                                                                                            aaGATCGAGGCCTACGGTAAGGCCGCCGTCGTCGGCGCCGATGGCGAAATCGAGCACGCCTCGGCCGTGATCCATACCCTGCGCTTCGGCAACCACTACCGCGAGGCGGTACAGGCCAAGAGCTA‑CCTGAGCTTCACCAACAAGCgcgg                               >  5:25663/1‑149 (MQ=255)                                                                                                                   aGGCCTACGGTAAGGCCGCCGTCGTCGGCGCCGATGGCGAAATCGAGCACGCCTCGGCCGTGATCCATACCCTGCGCTTCGGCAACCACTACCGCGAGGCGGTACAGGCCAAGAGCTA‑CCTGAGCTTCACCAACAAGCGCGGCGGCCCa                        <  8:160286/149‑1 (MQ=255)                                                                                                                     cttaccgtaggcctcgatcttgtcggcgccgATGGCGAAATCGAGCACGCCTCGGCCGTGATCCATACCCTGCGCTTCGGCAACCACTACCGCGAGGCGGTACAGGCCAAGAGCTA‑CCTGAGCTTCACCAACAAGCGCGGCGGCCCAgg                      <  3:315474‑M2/118‑1 (MQ=255)                                                                                                                             tAAGGCCGCCGTCGTCGGCGCCGATGGCGAAATCGAGCACGCCTCGGCCGTGATCCATACCCTGCGCTTCGGCAACCACTACCGCGAGGCGGTACAGGCCAAGAGCTA‑CCTGAGCTTCACCAACAAGCGCGGCGGCCCAGGCACTTCGa              >  1:306595/1‑149 (MQ=255)                                                                                                                               aGGCCGCCGTCGTCGGCGCCGATGGCGAAATCGAGCACGCCGCGGCCGTGATCCATACCCTGCGCTTCGGCAACCACTACCGCGAGGCGGTACAGGCCAAGAGCTA‑CCTGAGCTTCACCAACAAGCGCGGCGGCCCAGGCACTTCGATc            <  3:245957/149‑1 (MQ=255)                                                                                                                                ggCCGCCGTCGTCGGCGCCGATGGCGAAATCGAGCACGCCTCGGCCGTGATCCATACCCTGCTCTTCGGCAACCACTACCGCGAGGCGGTACAGGCCAAGAGCTA‑CCTGAGCTTCACCAACAAGCGCGGCGGCCCAGGCACTTCGATcc           <  1:260237/149‑1 (MQ=255)                                                                                                                                   cgccgTCGTCGGCGCCGATGGCGAAATCGAGCACGCCTCGGCCGTGATCCATACCCTGCGCTTCGGCAACCACTACCGCGAGGCGGTACAGGCCAAGAGCTA‑CCTGAGCTTCACCAACAAGCGCGGCGGCCCAGGCACTTCGATCCAGa        <  4:329983/149‑1 (MQ=255)                                                                                                                                     ccgTCGTCGGCGCCGATGGCGAAATCGAGCACGCCTCGGCCGTGATCCATACCCTGCGCTTCGGCAACCACTACCGCGAGGCGGTACAGGCCAAGAGCTA‑CCTGAGCTTCACCAACAAGCGCGGCGGCCCAGGCACTTCGATCCAGATc      <  5:61958/149‑1 (MQ=255)                                                                                                                                          gtcggcgccgATGGCGAAATCGAGCACGCCTCGGCCGTGATCCATACCCTGCGCTTCGGCAACCACTACCGCGAGGCGGTACAGGCCAAGAGCTA‑CCTGAGCTTCCCCAACAAGCCCGGCGGCCCAGGCACTGCGATCCAGATCCCga  >  2:294511‑M2/11‑148 (MQ=255)                                                                                                                                          gtcggcgccgATGGCGAAAACGAGCAAGCCTCGGCCGTGATCCATACCCTGCGCTTCGGCAACCACTAACGCGAGGCGGTACAGGCCAAGAGCTACCCTGAGCTTCACCAACAAGCGCGGCGGCCCAGGCACTTCGATCCAGATCCCga  <  1:294511‑M2/139‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                           CCGGTCGCGGTTTCGTTGAAGATCTGAAGCCGGAAATTCGCGCCAACTGCTCGGAGCTGGGTGCCCTGATGGTCGAGCGCCTGACTGCTGCCATTGGCGGCGCCGACAAGATCGAGGCCTACGGTAAGGCCGCCGTCGTCGGCGCCGATGGCGAAATCGAGCACGCCTCGGCCGTGATCCATACCCTGCGCTTCGGCAACCACTACCGCGAGGCGGTACAGGCCAAGAGCTA‑CCTGAGCTTCACCAACAAGCGCGGCGGCCCAGGCACTTCGATCCAGATCCCGA  >  NC_002947/4140494‑4140778

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.