New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4147675	48 (0.760)	4 (0.070)	4/254	NT	7.8%	coding (1758/2184 nt)	PP_3651	two‑component system sensor histidine kinase/response regulator
	?	NC_002947	= 4147716	49 (0.810)					coding (1799/2184 nt)	PP_3651	two‑component system sensor histidine kinase/response regulator

TCTTCGACCCGTTCTTCACCACCAAGGCCCCAGGTGAAGGTACCGGGCTCGGGTTGTCGCAGGTGTTTGGTTTCGCCAAGCAATCCGGGGGCGATGTACAGGTGAACAGCATCCCCGGCCAGGGCACCACCTTTACCCTGTATCTGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4147527‑4147675 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgccgGCCGAGGCGTCTTCGGGCGCGGCTGCAGCTGGGGCCTCTTGCGGCAGATACAGGGTAAAGGTGGTGCCCTGGCCGGGGATGCTGTTCACCTGTACATCGCCCCCGGATTGCTTGGCGAAACCAAACACCTGCGACAACCCGAGCCCG  <  NC_002947/4147716‑4147570                                                                                                                                                                                                                                                                                                          TCTTCGACCCGTTCTTCACCACCAAGGCCCCAGGAGAAGGTACCGGGCTCGGGTTGTCGCAGGTGTTTGGTTTCGCCAAGCAATCCGGCGGCGATGTACAGGTGAACAGCATCCCCGGCCAGGGCACCACCTTTACACTGTATCTGCCG                                                                                                                                                     >  6:102105/1‑149     CGACCCGTTCTTCACCACCAAGGCCCCAGGTGAAGGTACCGGGCTCGGGGTGTCGCAGGTGTTTGGTATCGCCAAGCAATCCGGGGGCGATGTACAGGTGAACAGCATCCCCGGCCAGGGCACCACCTTTACCCTGTATCTGCCG                                                                                                                                                     <  7:339509/145‑1                TCACCACCAAGGCCCCAGGTGAAGGTACCGGGCTCGGGTTGTCGCAGGTGTTTGGTTTCGCCAAGCAATCCGGGGGCGATGTACAGGTGAACAGCATCCCCGGCCAGGGCACCACCTTTACCCTGTATCTGCCGGCCGAGGCGTCTTCG                                                                                                                                      >  8:19006/1‑149                                                   GGGTTGTCGCAGGTGTTTGGTTTCGCCAAGCAATCCGGGGGCGATGTACAGGTGAACAGCATCCCCGGCCAGGGCACCACCTTTACCCTGTATCTGCCGGCCGAGGCGTCTTCGGGCGCGGCTGCAGCTGGGGCCTCTTGCGGCAGAT                                                                                                    <  7:19006/148‑1                                                                      GTTTCGCCAAGCAATCCGGGGGCGATGTACAGGTGAACAGCATCCCCGGCCAGGGCACCACCTTTACCCTGTATCTGCCGGCCGAGGCGTCTTCGGGCGCGGCTGCAGCTGGGGCCTCTTGCGGCAGATACAGG                                                                                               <  3:101358/134‑1                                                                      GTTTCGCCAAGCAATCCGGGGGCGATGTACAGGTGAACAGCATCCCCGGCCAGGGCACCACCTTTACCCTGTATCTGCCGGCCGAGGCGTCTTCGGGAGCGGCTGCAGATGGGGCCTCTAGCGGCAGATACAGG                                                                                               >  4:101358/1‑134                                                                                                                                                   CCGGCCGAGGCGTCTTCGGGCGCGGCTGCAGCTGGTGCCTCTTGCGGCAGATACAGGGTAAAGGTGGTGCCCTGGCCGGGGATGCTGTTCACCTGTACATCGCCACCGGATTGCTTGGCGAAACCAAACACCTGCGACAACCCGAGCC    <  8:179359/148‑1                                                                                                                                                    CGGCCGAGGCGTCTTCGGGCGCGGCTGCAGCTGGGGCCTCTTGCGGCAGATACAGGGTAAAGGTGGTGCCCTGGCCGGGGATGCTGTTCACCTGTACATCGCCCCCGGATTGCTTGGCGAAACCAAACACCTGCGACAACCCGAGCCCG  <  6:45775/149‑1                                                                                                                                                                                                                                                                                                          TCTTCGACCCGTTCTTCACCACCAAGGCCCCAGGTGAAGGTACCGGGCTCGGGTTGTCGCAGGTGTTTGGTTTCGCCAAGCAATCCGGGGGCGATGTACAGGTGAACAGCATCCCCGGCCAGGGCACCACCTTTACCCTGTATCTGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4147527‑4147675 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgccgGCCGAGGCGTCTTCGGGCGCGGCTGCAGCTGGGGCCTCTTGCGGCAGATACAGGGTAAAGGTGGTGCCCTGGCCGGGGATGCTGTTCACCTGTACATCGCCCCCGGATTGCTTGGCGAAACCAAACACCTGCGACAACCCGAGCCCG  <  NC_002947/4147716‑4147570

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.