New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4147675	48 (0.760)	4 (0.070)	4/254	NT	7.8%	coding (1758/2184 nt)	PP_3651	two‑component system sensor histidine kinase/response regulator
	?	NC_002947	= 4147716	49 (0.810)					coding (1799/2184 nt)	PP_3651	two‑component system sensor histidine kinase/response regulator

CGGGCTCGGGTTGTCGCAGGTGTTTGGTTTCGCCAAGCAATCCGGGGGCGATGTACAGGTGAACAGCATCCCCGGCCAGGGCACCACCTTTACCCTGTATCTGCCGCAAGAGGCCCCAGCTGCAGCCGCGCCCGAAGACGCCTCGGCCGGCAGCCAGCCACAGGTAGAGGGCGAGCGGCGACGAATACTGGTGGTAGAAGACAATCCCGACCTGGGCAGTTTCACAGCTCAGCTCCTCGAGGACCACGGCTACCAAATCAGCTATGCACGGTCGGCAGAAGAAGCGCT  >  NC_002947/4147570‑4147857                                                                                                                                                   |                                                                                                                                              cGGGCTCGGGTTGTCGCAGGTGTTTGGTTTCGCCAAGCAATCCGGGGGCGATGTACAGGTGAACAGCATCCCCGGCCAGGGCACCACCTTTACCCTGTATCTGCCGCAAGAGGCCCCAGCTGCAGCCGCGCCCGAAGACGCCTCGGCcg                                                                                                                                             <  6:45775‑M2/149‑3 (MQ=255)   ggCTCGGGTTGTCGCAGGTGTTTGGTTTCGCCAAGCAATCCGGTGGCGATGTACAGGTGAACAGCATCCCCGGCCAGGGCACCACCTTTACCCTGTATCTGCCGCAAGAGGCACCAGCTGCAGCCGCGCCCGAAGACGCCTCGGCcgg                                                                                                                                            <  8:179359‑M2/148‑4 (MQ=255)      tCGGGTTGTCGCAGGTGTTTGGTTTCGCCAAGCAATCCGGGGGCGATGTACAGGTGAACAGCATCCCCGGCCAGGGCACCACCGTTACCCTGTGTCTGCCGCAAGAGGCCCCAGCTGCAGCCGCGCCCGAAGACGCCTCGGCCGGcagc                                                                                                                                        >  6:124230/1‑149 (MQ=255)         ggTTGTCGCAGGTGTTTGGTTTCGCCAAGCAATCCGGGGGCGATGTACAGGTGAACAGCATCCCCGGCCAGGGCACCACCTTTACCCTGTATCTGCCGCAAGAGGCCCCAGCTGCAGCCGCGCCCGAAGACGCCTCGGCCGGcagccag                                                                                                                                     >  2:109926/1‑149 (MQ=255)          gTTGTCGCAGGTGTTTGGTTTCGCCAAGCAATCCGGGGGCGATGTACAGGTGAACAGCATCCCCGGCCAGGGCACCACCTTTACCCTGTATCTGCCGCAAGAGGCCCCAGCTGCAGCCGCGCCCGAAGACGCCTCGGCCGGcagccagc                                                                                                                                    <  4:167257/149‑1 (MQ=255)           ttGTCGCAGGTGTTTGGTTTCGCCAAGCAATCCGGGGGCGATGTACAGGTGAACAGCATCCCCGGCCAGGGCACCACCTTTACCCTGTATCTGCCGCAAGAGGCCCCAGCTGCAGCCGCGCCCGAAGACGCCTCGGCCGGCagccagcc                                                                                                                                   <  7:225728/149‑1 (MQ=255)                gCAGGTGTTTGGTTTCGCCAAGCAATCCGGGGGCGATGTACAGGTGAACAGCATCCCCGGCCAGGGCACCACCTTTACCCTGTATCTGCCGCAAGAGGCCCCAGCTGCAGCCGCGCCCGAAGACGCCTCGGCCGGCAGCCAGCCACAg                                                                                                                               <  5:102105/148‑1 (MQ=255)                gCAGGTGTTTGGTTTCGCCAAGCAATCCGGGGGCGATGTACAGGTGAACAGCATCCCCGGCCAGGGCACCACCTTTACCCTGTATCTGCCGCAAGAGGCCCCAGCTGCAGCCGCGCCCGAAGACGCCTCGGCCGGCAGCCAGCCACAg                                                                                                                               <  8:74115/148‑1 (MQ=255)                  aGGTGTTTGGTTTCGCCAAGCAATCCGGGGGCGATGTACAGGTGAACAGCATCCCCGGCCAGGGCACCACCTTTACCCTGTATCTGCCGCAAGAGGCCCCAGCTGCAGCCGCGCCCGAAGACGCCTCGGCCGGCCGCCAGCCACAgg                                                                                                                              >  8:279101/1‑147 (MQ=255)                    gtgtTTGGTTTCGCCAAGCAATCCGGGGGCGATGTACAGGTGAACAGCATCCCCGGCCAGGGCACCACCTTTACCCTGTATCTGCCGCAAGAGGCCCCAGCTGCAGCCGCGCCCGAAGACGCCTCGGCCGGCAGCCAGCCACAGGTa                                                                                                                            >  3:183753/1‑147 (MQ=255)                           gTTTCGCCAAGCAATCCGGGGGCGATGTACAGGTGAACAGCATCCCCGGCCAGGGCACCACCTTTACCCTGTATCTGCCGCAAGAGGCCCCAGCTGCAGCCGCGCCCGAAGACGCCTCGGCCGGCAGCCAGCCACAGGTAGAGGGCGAg                                                                                                                   >  8:86538/1‑149 (MQ=255)                            tttCGCCAAGCAATCCGGGGGCGATGTACAGGTGAACAGCATCCCCGGCCAGGGCACCACCTTTACCCTGTATCTGCCGCAAGAGGCCCCAGCTGCAGCCGCGCCCGAAGACGCCTCGGCCGGCAGCCAGCCACAGGTAGAGGGCGAgc                                                                                                                  <  6:124074/149‑1 (MQ=255)                                gCCAAGCAATCCGGGGGCGATGTACAGGTGAACAGCATCCCCGGCCAGGGCACCACCTTTACCCTGTATCTGCCGCAAGAGGCCCCAGCTGCAGCCGCGCCCGAAGACGCCTCGGCCGGCAGCCAGCCACAGGTAGAGGGCGAgcggc                                                                                                               >  1:140146/1‑148 (MQ=255)                                    aGCAATCCGGGGGCGATGTACAGGTGAACAGCATCCCCGGCCAGGGCACCACCTTTACCCTGTATCTGCCGCAAGAGGCCCCAGCTGCAGCCGCGCCCGAAGACGCCTCGGCCGGCAGCCAGCCACAGGTAGAGGGCGAGCGGcgacg                                                                                                           >  3:130172/1‑148 (MQ=255)                                         tCCGGGGGCGATGTACAGGTGAACAGCATCCCCGGCCAGGGCACCACCTTTACCCTGTATCTGCCGCAAGAGGCCCCAGCTGCAGCCGCGCCCGAAGACGCCTCGGCCGGCAGCCAGCCACAGGTAGAGGGCGAGCGGCGACGAATACt                                                                                                     <  7:176396/149‑1 (MQ=255)                                           cGGGGGCGATGTACAGGTGAACAGCATCCCCGGCCAGGGCACCACCTTTACCCTGTATCTGCCGCAAGAGGCCCCAGCTGCAGCCGCGCCCGAAGACGCCTCGGCCGGCAGCCAGCCACAGGTAGAGGGCGAGCGGCGACGAATACtg                                                                                                    <  1:109926/148‑1 (MQ=255)                                            gggggCGATGTACAGGTGAACAGCATCCCCGGCCAGGGCACCACCTTTACCCTGTATCTGCCGCAAGAGGCCCCAGCTGCAGCCGCGCCCGAAGACGCCTCGGCCGGCAGCCAGCCACAGGTAGAGGGCGAGCGGCGACGAATACtggt                                                                                                  <  7:86538/149‑1 (MQ=255)                                                   aTGTACAGGTGAACAGCATCCCCGGCCAGGGCACCACCTTTACCCTGTATCTGCCGCAAGAGGCCCCAGCTGCAGCCGCGCCCGAAGACGCCTCGGCCGGCAGCCAGCCACAGGTAGAGGGCGAGCGGCGACGAATACTGGTGGTagaa                                                                                           <  4:183753/149‑1 (MQ=255)                                                      tACAGGTGAACAGCATCCCCGGCCAGGGCACCACCTTTACCCTGTAACTGCCGCAAGAGGCCCCAGCTGCAGCCGCGCCCGAAGACGCCTCGGCCGGCAGCCAGCCACAGGTAGAGGGCGAGCGGCGACGAATACTGGTGGTagaaga                                                                                         >  1:85463/1‑148 (MQ=255)                                                          ggTGAACAGCATCCCCGGCCAGGGCACCACCTTTACCCTGTATCTGCCGCAAGAGGCCCCAGCTGCAGCCGCGCCCGAAGACGCCTCGGCCGGCAGCCAGCCACAGGTAGAGGGCGAGCGGCGACGAATACTGGTGGTAGAAGACAATc                                                                                    <  4:358618/149‑1 (MQ=255)                                                               aCAGCATCCCCGGCCAGGGCACCACCTTTACCCTGTATCTGCCGCAAGAGGCCCCAGCTGCAGCCGCGCCCGAAGACGCATCGGCCGGCAGCCAGCCACAGGTAGAGGGCGAGCGGCGACGAATACTGGTGGTAGAAGACAATCCCGAc                                                                               <  7:179359/149‑1 (MQ=255)                                                                   cATCCCCGGCCAGGGCACCACCTTTACCCTGTATCTGGCGCAAGAGGCCCCAGCTGCAGCCGCGGCGGAAGACGCCTCGGCCGGCAGCCAGCCACAGGTAGAGGGCGAGCGGCGACGAATACTGGTGGTAGAAGACAATCCCGACCTgg                                                                           <  8:216017/149‑1 (MQ=255)                                                                        ccGGCCAGGGCACCACCTTTACCCTGTATCTGCCGCAAGAGGCCCCAGCTGCAGCCGCGCCCGAAGACGCCTCGGCCGGCAGCCAGCCACAGGTAGAGGGCGAGCGGCGACGAATACTGGTGGTAGAAGACAATCCCGACCTGGGCAGt                                                                      >  2:143229/1‑149 (MQ=255)                                                                            ccAGGGCAACACTTTGGCCCTGTTTCTGCCGCAAGAGGCCCCAGCTGCAGCCGCGCCCGAAGACGCCTCGGCCGGCAGCCAGCCACAGGTAGAGGGCGAGCGGCGACGAATACTGTTGGTAGAAGACAATCCCGACCTGGGCAGTTTca                                                                  <  1:135850/149‑1 (MQ=255)                                                                              aGGGCACCACCTTTACCCTGTATCTGCCGCAAGAGGCCCCAGCTGCAGCCGCGCCCGAAGACGCCTCGGCCGGCAGCCAGCCACAGGTAGAGGGCGAGCGGCGACGAATACTGGTGGTAGAAGACAATCCCGACCTGGGCAGtt                                                                     <  5:136304/144‑1 (MQ=255)                                                                              aGGGCACCACCTTTACCCTGTATCTGCCGCAAGAGGCCCCAGCTGCAGCCGCGCCCGAAGACGCCTCGGCCGGCAGCCAGCCACAGGTAGAGGGCGAGCGGCGACGAATACTGGTGGTAGAAGACAATCCCGACCTGGGCAGtt                                                                     >  6:136304/1‑144 (MQ=255)                                                                                 gCACCACCTTTACCCTGTATCTGCCGCAAGAGGCCCCAGCTGCAGCCGCGCCCGAAGACGCCTCGGCCGGCAGCCAGCCACAGGTAGAGGGCGAGCGGCGACGAATACTGGTGGTAGAAGACAATCCCGACCTGGGCAGTTTCAcagct                                                             >  3:13899/1‑149 (MQ=255)                                                                                   accaccTTTACCCTGTATCTGCCGCAAGAGGCCCCAGCTGCAGCCGCGCCCGAAGACGCCTCGGCCGGCAGCCAGCCACAGGTAGAGGGCGAGCGGCGACGAATACTGGTGGTAGAAGACAATCCCGACCTGGGCAGTTTCAcagct                                                             >  6:371666/1‑147 (MQ=255)                                                                                        cTTTACCCTGTATCTGCCGCAAGAGGCCCCAGCTGCAGCCGCGCCCGAAGACGCCTCGGCCGGCAGCCAGCCACAGGTAGAGGGCGAGCGGCGACGAATACTGGTGGTAGAAGACAATCCCGACCTGGGCAGTTTCACAGCTCAGctcc                                                      >  2:395596/1‑149 (MQ=255)                                                                                              ccTGTATCTGCCGCTAGAGGCCCCATCTGCAGCCGCTCCCGAAGACGCCTCGGCcggcagatacagggtaaaggtggtgccctggccggggatgctgttcacctgtacatcgcccccggattgcttggcgaaac                                                               >  4:101358‑M2/1‑54 (MQ=255)                                                                                              ccTGTATCTGCCGCAAGAGGCCCCAGCTGCAGCCGCGCCCGAAGACGCCTCGGCcggcagatacagggtaaaggtggtgccctggccggggatgctgttcacctgtacatcgcccccggattgcttggcgaaac                                                               <  3:101358‑M2/134‑81 (MQ=255)                                                                                              ccTGTATCTGCCGCAAGAGGCCCCAGCTGCAGCCGCGCCCGAAGACGCCTCGGCCGGCAGCCAGCCACAGGTAGAGGGCGAGCGGCGACGAATACTGGTGGTAGAAGACAATCCCGACCTGGGCAGTTTCACAGCTCAGCTCCTCGAg                                                 >  5:178306/1‑148 (MQ=255)                                                                                              ccTGTATCTGCCGCAAGAGGCCCCAGCTGCAGCCGCGCCCGAAGACGCCTCGGCCGGCAGCCAGCCACAGGTAGAGGGCGAGCGGCGACGAATACTGGTGGTAGAAGACAATCCCGACCTGGGCAGTTTCACAGCTCAGCTCCTCGAg                                                 >  5:173298/1‑148 (MQ=255)                                                                                               cTGTATCTGCCGCAAGAGGCCCCAGCTGCAGCCGCGCCCGAAGACGCCTCGGCCGGCAGCCAGCCACAGGTAGAGGGCGAGCGGCGACGAATACTGGTGGTAGAAGACAATCCCGACCTGGGCAGTTTCACAGCTCAGCTCCTCGAGGa                                               >  2:167570/1‑149 (MQ=255)                                                                                                tGTATCTGCCGCAAGAGGCCCCAGCTGCAGCCGCGCCCGAAGACGCCTCGGCCGGCAGCCAGCCACAGGTAGAGGGCGAGCGGCGACGAATACTGGTGGTAGAAGACAATCCCGACCTGGGCAGTTTCACAGCTCAGCTCCTCGAGGAc                                              >  6:45468/1‑149 (MQ=255)                                                                                                   aTCTGCCGCAAGAGGCCCCAGCTGCAGCCGCGCCCGAAGACGCCTCGGCcggcagatacagggtaaaggtggtgccctggccggggatgctgttcacctgtacatcgcccccggattgcttggcgaaaccaaacacctgcgacaaccc                                            <  7:19006‑M2/148‑100 (MQ=255)                                                                                                    tCTGCCGCAAGAGGCCCCAGCTGCAGCCGCGCCCGAAGACGCCTCGGCCGGCAGCCAGCCACAGGTAGAGGGCGAGCGGCGACGAATACTGGTGGTAGAAGACAATCCCGACCTGGGCAGTTTCACAGCTCAGCTCCTCGAGGACCACg                                          >  3:77541/1‑149 (MQ=255)                                                                                                      tGCCGCAAGAGGCCCCAGCTGCAGCCGCGCCCGAAGACGCCTCGGCCGGCAGCCAGCCACAGGTAGAGGGCGAGCGGCGACGAATACTGGTGGTAGAAGACAATCCCGACCTGGGCAGTTTCACAGCTCAGCTCCTCGAGGACCACGGc                                        >  6:69672/1‑149 (MQ=255)                                                                                                        ccGCAAGAGGCCCCAGCTGCAGCCGCGCCCGAAGACGCCTCGGCCGGCAGCCAGCCACAGGTAGAGGGCGAGCGGCGACGAATACTGGTGGTAGAAGACAATCCCGACCTGGGCAGTTTCACAGCTCAGCTCCTCGAGGACCACGGCTa                                      >  6:166261/1‑149 (MQ=255)                                                                                                         cGCAAGAGGCCCCAGCTGCAGCCGCGCCCGAAGACGCCTCGGCCGGCAGCCAGCCACAGGTAGAGGGCGAGCGGCGACGAATACTGGTGGTAGAAGACAATCCCGACCTGGGCAGTTTCACAGCTCAGCTCCTCGAGGACCACGGCTAc                                     <  5:45775/149‑1 (MQ=255)                                                                                                          gCAAGAGGCCCCAGCTGCAGCCGCGCCCGAAGACGCCTCGGCCGGCAGCCAGCCACAGGTAGAGGGCGAGCGGCGACGAATACTGGTGGTAGAAGACAATCCCGACCTgg                                                                           >  6:84216/1‑110 (MQ=255)                                                                                                               ctgCCCCAGCGGCAGCCGCGCCCGAAGACGCCTCGGCCGGCAGCCAGCCACAGGTAGAGGGCGAGCGGCGACGAATACTGGTGGTAGAAGACAATCCCGACCTGGGCAGTTTCACAGCTCAGCTCCTCGAGGACCACGGCTACCAAATc                               <  3:279853/147‑1 (MQ=255)                                                                                                                    ccAGCTGCAGCCGCGCCCGAAGACGCCTCGGCCGGCAGCCAGCCACAGGTAGAGGGCGAGCGGCGACGAATACTGGTGGTAGAAGACAATCCCGACCTGGGCAGTTTCACAGCTCAGCTCCTCGAGGCCCACGGCTACCAACTCAGCTa                          >  4:26653/1‑149 (MQ=255)                                                                                                                    ccAGCTGCAGCCGCGCCCGAAGACGCCTCGGCCGGCAGCCAGCCACAGGTAGAGGGCGAGCGGCGACGAATACTGGTGGTAGAAGACAATCCCGACCTGGGCAGTTTCACAGCTCAGCTCCTCGAGGACCACGGCTACCAAATCAGCTa                          >  5:144079/1‑149 (MQ=255)                                                                                                                    ccAGCTGCAGCCGCGCCCGAAGACGCCTCGGCCGGCAGCCAGCCACAGGTAGAGGGCGAGCGGCGACGAATACTGGTGGTAGAAGACAATCCCGACCTGGGCAGTTTCACAGCTCAGCTCCTCGAGGACCACGGCTACCAAATCAGCTa                          <  5:69672/149‑1 (MQ=255)                                                                                                                    ccAGCTGCAGCCGCGCCCGAAGACGCCTCGGCCGGCAGCCAGCCACAGGTAGAGGGCGAGCGGCGACGAATACTGGTGGTAGAAGACAATCCCGACCTGGGCAGTTTCACAGCTCAGCTCCTCGAGGACCACGGCTACCAAATCAGCTa                          <  4:130172/149‑1 (MQ=255)                                                                                                                     cAGCTGCAGCCGCGCCCGAAGACGCCTCGGCCGGCAGCCAGCCACAGGTAGAGGGCGAGCGGCGACGAATACTGGTGGTAGAAGACAATCCCGACCTGGGCAGTTTCACAGCTCAGCTCCTCGAGGACCACGGCTACCAAATCAGCTAt                         <  5:371666/149‑1 (MQ=255)                                                                                                                     cAGCTGCAGCCGCGCCCGAAGACGCCTCGGCCGGCAGCCAGCCACAGGTAGAGGGCGAGCGGCGACGAATACTGGTGGTAGAAGACAATCCCGACCTGGGCAGTTTCACAGCTCAGCTCCTCGAGGACCACGGCTACCAAATCAGCTAt                         <  6:173298/149‑1 (MQ=255)                                                                                                                      aGCTGCAGCCGCGCCCGAAGACGCCTCGGCCGGCAGCCAGCCACAGGTAGAGGGCGAGCGGCGACGAATACTGGTGGTAGAAGACAATCCCGACCTGGGCAGTTTCACAGCTCAGCTCCTCGAGGACCACGGCTACCAAATCAGCTATg                        >  8:12438/1‑149 (MQ=255)                                                                                                                        cTGCAGCCGCGCCCGAAGACGCCTCGGCCGGCAGCCAGCCACAGGTAGAGGGCGAGCGGCGACGAATACTGGTGGTAGAAGACAATCCCGACCTGGGCAGttt                                                                    >  2:125115/1‑103 (MQ=255)                                                                                                                        cTGCAGCCGCGCCCGAAGACGCCTCCGCCGGCAGCCAGCCACAGGTAGAGGGCGAGCGGCGACGAATACTGGTGGTAGAAGACAATCCCGACCTGGGCAGttt                                                                    <  1:125115/103‑1 (MQ=255)                                                                                                                                    ccGAAGACGCCTCGGCCGGCAGCCAGCCACAGGTAGAGGGCGAGCGGCGACGAATACTGGTGGTAGAAGACAATCCCGACCTGGGCAGTTTCACAGCTCAGCTCCTCGAGGACCACGGCTACCAAATCAGCTATGCACGGTCGGCagaa          <  7:12438/149‑1 (MQ=255)                                                                                                                                     cGAAGACGCCTCGGCcggcagatacagggtaaaggtggtgccctggccggggatgctgttcacctgtacatcgcccccggattgcttggcgaaaccaaacacctgcgacaacccgagcccggtaccttcacctggggccttggtggtga         >  8:19006‑M2/1‑15 (MQ=255)                                                                                                                                        aGACGCCTCGGCCGGCAGCCAGCCACAGGTAGAGGGCGAGCGGCGACGAATACTGGTGGTAGAAGACAATCCCGACCTGGGCAGTTTCACAGCTCAGCTCCTCGAGGACCACGGCTACCAAATCAGCTATGCACGGTCGGCAGaagaag      <  2:85463/149‑1 (MQ=255)                                                                                                                                            gCCTCGGCCGGCAGCCAGCCACAGGTAGAGGGCGAGCGGCGACGAATACTGGTGGTAGAAGACAATCCCGACCTGGGCAGTTTCACAGCTCAGCTCCTCGAGGACCACGGCTACCAAATCAGCTATGCACGGTCGGCAGAAGAAGCGCt  >  2:98539/1‑149 (MQ=255)                                                                                                                                            gCCTCGGCCGGCAGCCAGCCACAGGTAGAGGGCGAGCGGCGACGAATACTGGTGGTAGAAGACAATCCCGACCTGGGCAGTTTCACAGCTCAGCTCCTCGAGGACCACGGCTACCAAATCAGCTATGCACGGTCGGCAGAAGAAGCGCt  >  1:138031/1‑149 (MQ=255)                                                                                                                                              cTCGGCCGGCAGCCAGCCACAGGTAGAGGGCGAGCGGCGACGAATACTGGTGGTAGAAGACAATCCCGACCTGGGCAGTTTCACAGCTCAGCTCCTCGAgg                                                <  6:88575/101‑1 (MQ=255)                                                                                                                                              cTCGGCCGGCAGCCAGCCACAGGTAGAGGGCGAGCGGCGACGAATACTGGTGGTAGAAGACAATCCCGACCTGGGCAGTTTCACAGCTCAGCTCCTCGAgg                                                >  5:88575/1‑101 (MQ=255)                                                                                                                                                   |                                                                                                                                              CGGGCTCGGGTTGTCGCAGGTGTTTGGTTTCGCCAAGCAATCCGGGGGCGATGTACAGGTGAACAGCATCCCCGGCCAGGGCACCACCTTTACCCTGTATCTGCCGCAAGAGGCCCCAGCTGCAGCCGCGCCCGAAGACGCCTCGGCCGGCAGCCAGCCACAGGTAGAGGGCGAGCGGCGACGAATACTGGTGGTAGAAGACAATCCCGACCTGGGCAGTTTCACAGCTCAGCTCCTCGAGGACCACGGCTACCAAATCAGCTATGCACGGTCGGCAGAAGAAGCGCT  >  NC_002947/4147570‑4147857

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.