New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4297999	73 (1.150)	4 (0.070)	4/254	NT	5.7%	coding (55/822 nt)	PP_3768	shikimate 5‑dehydrogenase
	?	NC_002947	= 4298031	63 (1.040)					coding (23/822 nt)	PP_3768	shikimate 5‑dehydrogenase

TACGGCATCGACACCCCGCAGCCGCGAATACCCAGGGCGCGGATCCCTGCCACCGCCGCCGGCAGGTCATCGGTGCGCATGGCCTTGTAGTAGAAGTCCAGGCCCAACTGCTGGTACAGGTGGTTGTGAAAGCGCACGCCGAAGGTGCCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4297848‑4297999 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgggACACCGTGCTTTGCATCTCTCTGGCCGGTCGCCCCGGCACCTTCGGCGTGCGCTTTCACAACCACCTGTACCAGCAGTTGGGCCTGGACTTCTACTACAAGGCCATGCGCACCGATGACCTGCCGGCGGCGGTGGCAGGGATCCGC  <  NC_002947/4298031‑4297886                                                                                                                                                                                                                                                                                                            TACGGCATCGACACCCCGCAGCCGCGAATACCCAGGGCGCGGATCCCTGCCACCGCCGCCGGCAGGTCAACGCTGCGCATGGCCTTGTAGTAGAAGTCCAGGCCCAACTGCTGGTACAGGTGGTTGTGAAAGCGCACGCCGAAGGTGCC                                                                                                                                                       >  3:246504/1‑149    GGCATCGACACCCCGCAGCCGCGAATACCCAGGGCGCGGATCCCTGCCACCGCCGCCGGCAGGTCATCGGTGCGCATGGCCTTGTAGTAGAAGTCCAGGCCCAACTGCTGGTACAGGTGGTTGTGAAAGCGCACGCCGAAGGTGCCGGG                                                                                                                                                    <  5:1118/149‑1                                CCAGGGCGCGGATCCCTGCCACCGCCGCCGGCAGGTCATCGGTGCGCATGGCCTTGTAGTAGAAGTCCAGGCCCAACTGCTGGTACAGGTGGTTGTGAAAGCGCACGCCGAAGGTGCCGGGACACCGTGCTTTGCATCTCTCTGGCCGG                                                                                                                        >  5:77638/1‑149                                        CGGATCCCTGCCACCGCCGCCGGCAGGTCATCGGTGCGCATGGCCTTGTAGTAGAAGTCCAGGCCCAACTGCTGGTACAGGTGGTTGTGAAAGCGCACGCCGAAGGTGCCGGGACACCGTGCTTTGCATCTCTCTGGCCGGTCGCCCCG                                                                                                                <  6:77638/149‑1                                              CCTGCCACCGCCGCCGGCAGGTCATCGGTGCGCATGGCCTTGTAGTAGAAGTCCAGGCCCAACTGCTGGTACAGGTGGTTGTGAAAGCGCACGCCGAAGGTGCCGGGACACCGTGCTTTGCATCTCTCTGGCCGGTCGCCCCGGCACCT                                                                                                          <  1:340307/149‑1                                                   CACCGCCGCCGGCAGGTCATCGGTGCGCATGGCCTTGTAGTAGAAGTCCAGGCCCAACTGCTGGTACAGGTGGTTGTGAAAGCGCACGCCGAAGGTGCCGGGACACCGTGCTTTGCATCTCTCTGGCCGGTCGCCCCGGCACCTTCGGC                                                                                                     <  5:309584/149‑1                                                                                                                                                     CGGGACACCGAGCTTTGCATCTCTCTGGCCGGTCGCCCCGGCACCTTCGGCGTGCGCTTTCACAACCACCTGTACCAGCAGTTGGGCCTGGACTTCTACTACAAGGCCATGCGCACCGATGACCTGCCGGCGGCGGTGGCAGGGATCCG   <  7:298746/149‑1                                                                                                                                                      GGGACACCGTGCTTTGCATCTCTCTGGCCGGTCGCCCCGGCACCTTCGGCGTGCGCTTTCACAACCACCTGTACCAGCAGTTGGGCCTGGACTTCTACTACAAGGCCATGCGCACCGATGACCTGCCGGCGGCGGTGGCAGGGATCCGC  <  6:216558/149‑1                                                                                                                                                                                                                                                                                                            TACGGCATCGACACCCCGCAGCCGCGAATACCCAGGGCGCGGATCCCTGCCACCGCCGCCGGCAGGTCATCGGTGCGCATGGCCTTGTAGTAGAAGTCCAGGCCCAACTGCTGGTACAGGTGGTTGTGAAAGCGCACGCCGAAGGTGCCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4297848‑4297999 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgggACACCGTGCTTTGCATCTCTCTGGCCGGTCGCCCCGGCACCTTCGGCGTGCGCTTTCACAACCACCTGTACCAGCAGTTGGGCCTGGACTTCTACTACAAGGCCATGCGCACCGATGACCTGCCGGCGGCGGTGGCAGGGATCCGC  <  NC_002947/4298031‑4297886

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.