New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4425408 =	40 (0.630)	3 (0.050)	3/254	NT	6.6%	intergenic (‑466/‑334)	PP_5647/PP_3917	hypothetical protein/hypothetical protein
	?	NC_002947	4425475 =	47 (0.770)					intergenic (‑533/‑267)	PP_5647/PP_3917	hypothetical protein/hypothetical protein

TCTGTTTTCTCTGCGAGGTGCTGACAGGAGCCGGTTATTGATTTTTTCGTTTGTACCCGTCGGTCTGATATAAATCTTCTCTAGTCTCTGTAGGCGCACACTCAATTTAGCTCAGGACTTCTGAGCATTGAGAGGTGCGTATGACCAGAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4425558‑4425408 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagagaCTAGAGAAGATTTATATCAGACCGACGGGTACAAACGAAAAAATCAATAACCGGCTCCTGTCAGCACCTCGCAGAGAAAACAGATCGCAGATATTCAGCATGCGTAGCT  >  NC_002947/4425475‑4425583                                                                                                                                                                                                                                                                      TCTGTTTTCTCTGCGAGGTGCTGACAGGAGCCGGTTATTGATTTTTTCGTTTGTACCCGTCGGTCTGATATAAATCTTCTCTAGTCTCTGTAGGCGCACACTCAATTTAGCTCAGGACTTCTGAGCATTGAGAGGTGCGTATGACCAG                                                                                                                  <  8:314543/148‑1     TTTTCTCTGCGAGGTGCTGACAGGAGCCGGTTATTGATTTTTTCGTTTGTACCCGTCGGTCTGATATAAATCTTCTCTAGTCTCTGTAGGCGCACACTCAATTTAGCTCAGGACTTCTGAGCATTGAGAGGTGCGTATGACCAGAG                                                                                                                <  4:114817/146‑1     TTTTCTCTGCGAGGTGCTGACAGGAGCCGGTTATTGATTTTTTCGTTTGTACCCGTCGGTCTGATATAAATCTTCTCTAGTCTCTGTAGGCGCACACTCAATTTAGCTCAGGACTTCTGAGCATTGAGAGGTGCGTATGACCAGA                                                                                                                 <  3:54588/145‑1     TTTTCTCTGCGAGGTGCTGACAGGAGCCGGTTATTGATTTTTTCGTTTGTACCCGTCGGTCTGATATAAATCTTCTCTAGTCTCTGTAGGCGCACACTCAATTTAGATCAGGACTTCTGAGCATTGAGAGGTGCGTATGACAAGAGA                                                                                                               >  1:179858/1‑147                                                                                 CTAGTCTCTGTAGGCGCACACTCAATTTAGCTCAGGACTTCTGAGCATTGAGAGGTGCGTATGACCAGAGACTAGAGAAGATTTATATCAGACCGACGGGTACAAACGAAAAAATCAATAACCGGCTCCTGTCAGCACCTCGCAGAGA                                  >  8:285233/1‑148                                                                                  TAGTCTCTGTAGGCGCACACTCAATTTAGCTCAGGACTTCTGAGCATTGAGAGGTGCGTATGACCAGAGACTAGAGAAGATTTATATCAGACCGACGGGTACAAACGAAAAAATCAATAACCGGCTCCTGTCAGCACCTCGCAGAGAA                                 >  1:83938/1‑148                                                                                                                  AGGACTTCTGAGCATTGAGAGGTGCGTATGACCAGAGACTAGAGAAGATTTATATCAGACCGACGGGTACAAACGAAAAAATCAATAACCGGCTCCTGTCAGCACCTCGCAGAGAAAACAGATCGCAGATATTCAGCATGCGTAGCT  <  7:285233/147‑1                                                                                                                                                                                                                                                                      TCTGTTTTCTCTGCGAGGTGCTGACAGGAGCCGGTTATTGATTTTTTCGTTTGTACCCGTCGGTCTGATATAAATCTTCTCTAGTCTCTGTAGGCGCACACTCAATTTAGCTCAGGACTTCTGAGCATTGAGAGGTGCGTATGACCAGAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4425558‑4425408 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagagaCTAGAGAAGATTTATATCAGACCGACGGGTACAAACGAAAAAATCAATAACCGGCTCCTGTCAGCACCTCGCAGAGAAAACAGATCGCAGATATTCAGCATGCGTAGCT  >  NC_002947/4425475‑4425583

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.