New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4425408 =	40 (0.630)	3 (0.050)	3/254	NT	6.6%	intergenic (‑466/‑334)	PP_5647/PP_3917	hypothetical protein/hypothetical protein
	?	NC_002947	4425475 =	47 (0.770)					intergenic (‑533/‑267)	PP_5647/PP_3917	hypothetical protein/hypothetical protein

CGGTGGGCCTTGTTTCTGCGCGCCTCGAAAGGGTCGGTTATCAGTGTAATCGTCGCGATCCTCTGGACGGGCCCTCTTGGAATCATCGTCTGAACCGGTAGGCCAACCGCCATTACGATCTGACTTGCCACTTTGGCCGTTATCCCTATCTCTGGTCATACGCACCTCTCAATGCTCAGAAGTCCTGAGCTAAATTGAGTGTGCGCCTACAGAGACTAGAGAAGATTTATATCAGACCGACGGGTACAAACGAAAAAATCAATAACCGGCTCCTGTCAGCACCTCGCAGAGAAAA  >  NC_002947/4425260‑4425554                                                                                                                                                     |                                                                                                                                                   cGGTGGGCCTTGTTTCTGCGCGCCTAGAAATGGTCTGTTATCAGTGTAATCGTCGCGATCCTCTGGACGGGCCCTCTTGGAATCATCGTCTGAACCGGTAGGCCAACCGCCATTACGATCTGACTTGCCACTTTGGCCGTTATCCCTAt                                                                                                                                                    <  1:373903/149‑1 (MQ=255)  ggTGGGCCTTGTTTCTGCGCGCCTCGAAAGGGTCGGTTATCAGTGTAATCGTCGCGATCCTCTGGACGGGCCCTCTTGGAATCATCGTCTGAACCGGTAGGCCAACCGCCATTACGATCTGACTTGCCACTTTGGCCGTTATCCCTAtc                                                                                                                                                   >  4:159328/1‑149 (MQ=255)       gCCTTGTTTCTGCGCGCCTCGAAAGGGTCGGTTATCAGTGTAATAGTCGCGATCCTCTGGACGGGCCCTCTTGGAATCATCGTCTGAACCGGTAGGCCAACCGCCATTACGATCTGACTTGCCACTTTGGCCGTTATCCCTATCTCTgg                                                                                                                                              <  5:58384/149‑1 (MQ=255)         cTTGTTTCTGCGCGCCTCGAAAGGGTCGGTTATCAGTGTAATCGTCGCGATCCTCTGGACGGGCCCTCTTGGAATCATCGTCTGAACCGGTAGGCCAACCGCCATTACGATCTGACTTGCCACTTTGGCCGTTATCCCTATCTCTGGt                                                                                                                                             >  5:98284/1‑148 (MQ=255)          ttGTTTCTGCGCGCCTCGAAAGGGTCGGTTATCAGTGTAATCGTCGCGATCCTCTGGACGGGCCCTCTTGGAATCATCGTCTGAACCGGTAGGCCAACCGCCATTACGATCTGACTTGCCACTTTGGCCGTTATCCATATCTCTGGTCa                                                                                                                                           >  5:158826/1‑149 (MQ=255)                        cTCGAAAGGGTCGGTTATCAGTGTAATCGTCGCGATCCTCTGGACGGGCCCTCTTGGAATCATCGTCTGAACCGGTAGGCCAACCGCCATTACGATCTGACTTGCCACTTTGGCCGTTATCCCTATCTCTGGTCATACGCACCTCTCaa                                                                                                                             >  5:219691/1‑149 (MQ=255)                                ggTCGGTTATCAGTGTAATCGTCGCGATCCTCTGGACGGGCCCTCTTGGAATCATCGTCTGAACCGGTAGGCCAACCGCCATTACGATCTGACTTGCCACTTTGGCCGTTATCCCTATCTCTGGTCATACGCACCTCTCAATGCTCAg                                                                                                                      >  8:173932/1‑148 (MQ=255)                                        agctacgcatgctgaatatctgcgatctgttttctctgcgaggtgctgacaggagccggttattgattttttcgtttgtacccgtcggtctgatataaatcttctctagTCTCTGGTCATACGCACCTCTCAATGCTCAGAAGTCCt                                                                                                               <  7:285233‑M1/38‑1 (MQ=255)                                            gtgtAATCGTCGCGATCCTCTGGACGGGCCCTCTTGGAATCATCGTCTGAACCGGTAGGCCAACCGCCATTACGATCTGACTTGCCACTTTGGCCGTTATCCCTATCTCTGGTCATACGCACCTCTCAATGCTCAGAAGTCCTGAGCt                                                                                                          >  2:192816/1‑148 (MQ=255)                                             tgtAATCGTCGCGATCCTCTGGACGGGCCCTCTTGGAATCATCGTCTGAACCGGTAGGCCAACCGCCATTACGATCTGACTTGCCACTTTGGCCGTTATCCCTATCTCTGGTCATACGCACCTCTCAATGCTCAGAAGTCCTGAGCTa                                                                                                         >  1:99649/1‑148 (MQ=255)                                                 aTCGTCGCGATCCTCTGGACGGGCCCTCTTGGAATCATCGTCTGAACCGGTAGGCCAACCGCCATTACGATCTGACTTGCCACTTTGGCCGTTATCCCTATCTCTGGTCATACGCACCTCTCAATGCTCAGAAGTCCTGAGCTAAAtt                                                                                                     <  4:135524/148‑1 (MQ=255)                                                  tcgtcgCGATCCTCTGGACGGGCCCTCTTGGAATCATCGTCTGAACCGGTAGGCCAACCGCCATTACGATCTGACTTGCCACTTTGGCCGTTATCCCTATCTCTGGTCATACGCACCTCTCAATGCTCAGGACTTCTGAGcattga                                                                                                      >  8:349324/1‑141 (MQ=255)                                                  tcgtcgCGATCCTCTGGACGGGCCCTCTTGGAATCATCGTCTGAACCGGTAGGCCAACCGCCATTACGATCTGACTTGCCACTTTGGCCGTTATCCCTATCTCTGGTCATACGCACCTCTCAATGCTCAGGACTTCTGAGcattga                                                                                                      <  7:349324/146‑6 (MQ=255)                                                  tcgtcgCGATCCTCTGGACGGGCCCTCTTGGAATCATCGTCTGAACCGGTAGGCCAACCGCCATTACGATCTGACTTGCCACTTTGGCCGTTATCCCTATCTCTGGTCATACGCACCTCTCAATGCTCAGGACTTCTGAGcattga                                                                                                      >  4:14271/1‑141 (MQ=255)                                                  tcgtcgCGATCCTCTGGACGGGCCCTCTTGGAATCATCGTCTGAACCGGTAGGCCAACCGCCATTACGATCTGACTTGCCACTTTGGCCGTTATCCCTATCTCTGGTCATACGCACCTCTCAATGCTCAGGACTTCTGAGcattga                                                                                                      <  3:14271/146‑6 (MQ=255)                                                  tcgtcgCGATCCTCTGGACGGGCCCTCTTGGAATCATCGTCTGAACCGGTAGGCCAACCGCCATTACGATCTGACTTGCCACTTTGGCCGTTATCCCTATCTCTGGTCATACGCACCTCTCAATGCTCAGAAGTCCTGAGCTAAAtt                                                                                                     >  6:47494/1‑147 (MQ=255)                                                   cgtcgCGATCCTCTGGTCTGGCCCTCTTGGATTCATCGTCTGAACGGGTAGGCCAACCGCCATTACGTTCTGACTTGGCACTTTGGCCGTTATCCCTATCTCTGGTCATACGCACCTCTGAATGCTCAGAAGTCCTGAGCTAAATTGa                                                                                                   <  4:172067/148‑1 (MQ=255)                                                    gtcgCGATCCTCTGGACGGGCCCTCTTGGAATCATCGTCTGAACCGGTAGGCCAACCGCCATTACGATCTGACTTGCCACTTTGGCCGTTATCCCTATCTCTGGTCATACGCACCTCTCAATGCTCAGAAGTCCTGAGCTAAATTGAg                                                                                                  <  1:3941/148‑1 (MQ=255)                                                     tcgCGATCCTCTGGACGGGCCCTCTTGGAATCATCGTCTGAACCGGTAGGCCAACCGCCATTACGATCTGACTTGCCACTTTGGCCGTTATCCCTATCTCTGGTCATACGCACCTCTCAATGCTCAGAAGTCCTGAGCTAAATTGAgtg                                                                                                >  2:179858/1‑149 (MQ=255)                                                          aTCCTCTGGACGGGCCCTCTTGGAATCATCGTCTGAACCGGTAGGCCAACCGCCATTACGATCTGACTTGCCACTTTGGCCGTTATCCCTATCTCTGGTCATACGCACCTCTCAATGCTCAGAAGTCCTGAGCTAAATTGAGTGTgcgc                                                                                           <  7:173932/149‑1 (MQ=255)                                                              tctGGACGGGCCCTCTTGGAATCATCGTCTGAACCGGTAGGCCAACCGCCATTACGATCTGACTTGCCACTTTGGCCGTTATCCCTATCTCTGGTCATACGCACCTCTCAATGCTCAGAAGTCCTGAGCTAAATTGAGTGTGCGCCTa                                                                                        >  1:214583/1‑148 (MQ=255)                                                                  gACGGGCCCTCTTGGAATCATCGTCTGAACCGGTAGGCCAACCGCCATTACGATCTGACTTGCCACTTTGGCCGTTATCCCTATCTCTGGTCATACGCACCTCTCAATGCTCAGAAGTCCTGAGCTAAATTGAGTGTGCGCCTACagag                                                                                   <  5:47494/149‑1 (MQ=255)                                                                     gggCCCTCTTGGAATGATTGTCTGAACCGGTAGGCCAACCGCCATTACGATCTGACTTGCCACTTTGGCCGTTATCCCTATCTCTGGTCATACGCACCTCTCAATGCTCAGAAGTCCTGAGCTAAATTGAGTGTGCGCCTACAGAGAc                                                                                 <  7:342850/148‑1 (MQ=255)                                                                       ttctctgcgaggtgctgacaggagccggttattgattttttcgtttgtacccgtcggtctgatataaatcttctctagTCTCTGGTCATACGCACCTCTCAATGCTCAGAAGTCCTGAGCTAAATTGAGTGTGCGCCTACAGAGACTa                                                                               >  1:83938‑M1/79‑148 (MQ=255)                                                                        tctctgcgaggtgctgacaggagccggttattgattttttcgtttgtacccgtcggtctgatataaatcttctctagTCTCTGGTCATACGCACCTCTCAATGCTCAGAAGTCCTGAGCTAAATTGAGTGTGCGCCTACAGAGACTag                                                                              >  8:285233‑M1/78‑148 (MQ=255)                                                                             ttGGAATCATCGTCTGAACCGTTAGGCCAACCGCCATTACGATCTGACTTGCCACTTTGGCCGTTATCCCTATCTCTGGTCATACGCACCTCTCAATGCTCAGAAGTCCTGAGCTAAATTGAGTGTGCGCCTACAGAGACTAGagaa                                                                          <  6:98284/147‑1 (MQ=255)                                                                              tGGAATCATCGTCTGAACCGGTAGGACAACTGCGATTACGTTCTTACTTGCCACTTTGTCCGTTATCCCTATCTCTGGTCATACGTTATTCTCAATGCTCTGAAGTCCTTAGCTAAATTGAGTGTGCGCCTAGTGAGACTAGagaaga                                                                        <  6:158826/148‑1 (MQ=255)                                                                                gAATCATCGTCTGAACCGGTAGGCCAACCGCCATTACGATCTGACTTGCCACTTTGGCCGTTATCCCTATCTCTGGTCATACGCACCTCTCAATGCTCAGAAGTCCTGAGCTAAATTGAGTGTGCGCCTACAGAGACTAGAGAAGAttt                                                                     <  1:192816/149‑1 (MQ=255)                                                                                 aaTCATCGTCTGAACCGGTAGGCCAACCGCCATTACGATCTGACTTGCCACTTTGGCCGTTATCCCTATCTCTGGTCATACGCACCTCTCAATGCTCAGAAGTCCTGAGCTAAATTGAGTGTGCGCCTACAGAGACTAGAGAAGATTta                                                                    <  2:214583/149‑1 (MQ=255)                                                                                      tcGTCTGAACCGGTAGGCCAACCGCCATTACGATCTGACTTGCCACTTTGGCCGTTATCCCTATCTCTGGTCATACGCACCTCTCAATGCTCAGAAGTCCTGAGCTAAATTGAGTGTGCGCCTACAGAGACTAGAGAAGATTTatat                                                                 >  1:325823/1‑147 (MQ=255)                                                                                         tCTGAACCGGTAGGCCAACCGCCATTACGATCTGACTTGCCACTTTGGCCGTTATCCCTATCTCTGGTCATACGCACCTCTCAATGCTCAGAAGTCCTGAGCTAAATTGAGTGTGCGCCTACAGAGACTAGAGAAGATTtata                                                                  >  1:368484/1‑143 (MQ=255)                                                                                         tCTGAACCGGTAGGCCAACCGCCATTACGATCTGACTTGCCACTTTGGCCGTTATCCCTATCTCTGGTCATACGCACCTCTCAATGCTCAGAAGTCCTGAGCTAAATTGAGTGTGCGCCTACAGAGACTAGAGAAGATTtata                                                                  <  2:368484/143‑1 (MQ=255)                                                                                            gAACCGGTAGGCCAACCGCCATTACGATCTGACTTGCCACTTTGGCCGTTATCCCTATCTCTGGTCATACGCACCTCTCAATGCTCAGAAGTCCTGAGCTAAATTGAGTGTGCGCCTACAGAGACTAGAGAAGATTTATATCAGACCGa                                                         >  2:148861/1‑149 (MQ=255)                                                                                             aaCCGGTAGGCCAACCGCCATTACGATCTCACTTGCCACTTTGGCCGTTATCCCTATCTCTGGTCATACGCACCTCTCAATCCTCAGAAGTCCTTAGCTAAATTGAGTGTGCGCCTACAGAGACTAGAGAAGATTTATATCAGACCGAc                                                        <  6:20480/149‑1 (MQ=255)                                                                                              aCCGGTAGGCCAACCGCCATTACGATCTGACTTGCCACTTTGGCCGTTATCCCTATCTCTGGTCATACGCACCTCTCAATGCTCAGAAGTCCTGAGCTAAATTGAGTGTGCGCCTACAGAGACTAGAGAAGATTTATATCAGACCGAc                                                        <  6:219691/148‑1 (MQ=255)                                                                                                      gCCAACCGCCATTACGATCTGACTTGCCACTTTGGCCGTTATCCCTATCTCTGGTCATACGCACCTCTCAATGCTCAGAAGTCCTGAGCTAAATTGAGTGTGCGCCTACAGAGACTAGAGAAGATCTATATCAGACCGACGGGTACaaa                                               >  4:46141/1‑149 (MQ=255)                                                                                                       ccAACCGCCATTACGATCTGACTTGCCACTTTGGCCGTTATCCCTATCTCTGGTCATACGCACCTCTCAATGCTCAGAAGTCCTGAGCTAAATTGAGTGTGCGCCTACAGAGACTAGAGAAGATTTATATCAGACCGACGGGTACAAAc                                              <  2:99649/149‑1 (MQ=255)                                                                                                                       tCTGACTTGCCACTTTGGCCGTTATCCCTATCTCTGGTCATACGCACCTCTCAATGCTCAGAAGTCCTGAGCTAAATTGAGTGTGCGCCTACAGAGACTAGAGAAGATTTATATCAGACCGACGGGTACAAACGAAAAAATCAATAAcc                              >  8:5538/1‑149 (MQ=255)                                                                                                                           aCTTGCCACTTTGGCCGTTATCCCTATCTCTGGTCATACGCACCTCTCAATGCTCAGAAGTCCTGAGCTAAATTGAGTGTGCGCCTACAGAGACTAGAGAAGATTTATATCAGACCGACGGGTACAAACGAAAAAATCAATaa                                <  1:148861/143‑1 (MQ=255)                                                                                                                           aCTTGCCACTTTGGCCGTTATCCCTATCTCTGGCCATACGCACCTCTCAATGCTCAGAAGTCCTGAGCTAAATTGAGTGTGCGCCTACAGAGACTAGAGAAGATTTATATCAGACCGACGGGTACAAACGAAAAAATCAATAACCGGc                           <  3:159328/148‑1 (MQ=255)                                                                                                                             ttGCCACTTTGGCCGTTATCCCTATCTCTGGTCATACGCACCTCTCAATGCTCAGAAGTCCTGAGCTAAATTGAGTGTGCGCCTACAGAGACTAGAGAAGATTTATATCAGACCGACGGGTACAAACGAAAAAATCAATACCCGGCTcc                        >  8:261307/1‑149 (MQ=255)                                                                                                                             ttGCCACTTTGGCCGTTATCCCTATCTCTGGTCATACGCACCTCTCAATGCTCAGAAGTCCTGAGCTAAATTGAGTGTGCGCCTACAGAGACTAGAGAAGATTTATATCAGACCGACGGGTACAAACGAAAAAATCAATAACCGGCTcc                        >  5:20763/1‑149 (MQ=255)                                                                                                                                  aCTTTGGCCGTTATCCCTATCTCTGGTCATACGCACCTCTCAATGCTCAGAAGTCCTGAGCTAAATTGATTGTGCGCCTACAGAGACTAGAGAAGATTTATATCAGACCGACGGGTACAAACGAAAAAATCAATAACCGGCTCCTGTCa                   <  5:108656/149‑1 (MQ=255)                                                                                                                                  aCTTTGGCCGTTATCCCTATCTCTGGTCATACGCACCTCTCAATGCTCAGAAGTCCTGAGCTAAATTGAGTGTGCGCCTACAGAGACTAGAGAAGATTTATATCAGACCGACGGGTACAAACGAAAAAATCAATAACCGGCTCCTGt                     >  6:254946/1‑147 (MQ=255)                                                                                                                                               tCCCTATCTCTTGTCATACGCACCTCTCAATGCTCATAAGTCCTTAGCTAAATTGAGTGTGCGCCTACAGAGACTAGAGAAGATTTATATCAGACCGACGGGTACAAACGAAAAAATCAATAACCGGCTCCTGTCAGCACCTCGCagag      <  2:325823/149‑1 (MQ=255)                                                                                                                                                cccTATCTCTGGTCATACGCACCTCTCAATGCTCAGAAGTCCTGAGCTAAATTGAGTGTGCGCCTACAGAGACTAGAGAAGATTTATATCAGACCGACGGGTACAAACGAAAAAATCAATAACCGGCTCCTGTCAGCACCTCGCagag      >  5:19767/1‑148 (MQ=255)                                                                                                                                                     TCTCTTGTCATACGCACCTCTCAATGCTCAGAAGTCCTGATCTAAATTGAGTGTGCGCCTACAGAGACTAGAGAAGATTTATATCAGACCGACGGGTACAAACGAAAAAATCAATAACCGGCTCCTGTCAGCACCTCGCAGAGaaaa  >  1:179858‑M1/1‑147 (MQ=255)                                                                                                                                                     |                                                                                                                                                   CGGTGGGCCTTGTTTCTGCGCGCCTCGAAAGGGTCGGTTATCAGTGTAATCGTCGCGATCCTCTGGACGGGCCCTCTTGGAATCATCGTCTGAACCGGTAGGCCAACCGCCATTACGATCTGACTTGCCACTTTGGCCGTTATCCCTATCTCTGGTCATACGCACCTCTCAATGCTCAGAAGTCCTGAGCTAAATTGAGTGTGCGCCTACAGAGACTAGAGAAGATTTATATCAGACCGACGGGTACAAACGAAAAAATCAATAACCGGCTCCTGTCAGCACCTCGCAGAGAAAA  >  NC_002947/4425260‑4425554

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.