New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4425408 =	40 (0.630)	3 (0.050)	3/254	NT	6.6%	intergenic (‑466/‑334)	PP_5647/PP_3917	hypothetical protein/hypothetical protein
	?	NC_002947	4425475 =	47 (0.770)					intergenic (‑533/‑267)	PP_5647/PP_3917	hypothetical protein/hypothetical protein

GGGCCCTCTTGGAATCATCGTCTGAACCGGTAGGCCAACCGCCATTACGATCTGACTTGCCACTTTGGCCGTTATCCCTATCTCTGGTCATACGCACCTCTCAATGCTCAGAAGTCCTGAGCTAAATTGAGTGTGCGCCTACAGAGACTAGAGAAGATTTATATCAGACCGACGGGTACAAACGAAAAAATCAATAACCGGCTCCTGTCAGCACCTCGCAGAGAAAACAGATCGCAGATATTCAGCATGCGTAGCTGATGCTCGACCGAGATCGCACCTGACATGCACC  >  NC_002947/4425328‑4425616                                                                                                                                                    |                                                                                                                                              gggCCCTCTTGGAATGATTGTCTGAACCGGTAGGCCAACCGCCATTACGATCTGACTTGCCACTTTGGCCGTTATCCCTATCTCTGGTCATACGCACCTCTCAATGCTCAGAAGTCCTGAGCTAAATTGAGTGTGCGCCTACAGAGAc                                                                                                                                               <  7:342850/148‑1 (MQ=255)   ttctctgcgaggtgctgacaggagccggttattgattttttcgtttgtacccgtcggtctgatataaatcttctctagTCTCTGGTCATACGCACCTCTCAATGCTCAGAAGTCCTGAGCTAAATTGAGTGTGCGCCTACAGAGACTa                                                                                                                                             >  1:83938‑M1/79‑148 (MQ=255)    tctctgcgaggtgctgacaggagccggttattgattttttcgtttgtacccgtcggtctgatataaatcttctctagTCTCTGGTCATACGCACCTCTCAATGCTCAGAAGTCCTGAGCTAAATTGAGTGTGCGCCTACAGAGACTag                                                                                                                                            >  8:285233‑M1/78‑148 (MQ=255)         ttGGAATCATCGTCTGAACCGTTAGGCCAACCGCCATTACGATCTGACTTGCCACTTTGGCCGTTATCCCTATCTCTGGTCATACGCACCTCTCAATGCTCAGAAGTCCTGAGCTAAATTGAGTGTGCGCCTACAGAGACTAGagaa                                                                                                                                        <  6:98284/147‑1 (MQ=255)          tGGAATCATCGTCTGAACCGGTAGGACAACTGCGATTACGTTCTTACTTGCCACTTTGTCCGTTATCCCTATCTCTGGTCATACGTTATTCTCAATGCTCTGAAGTCCTTAGCTAAATTGAGTGTGCGCCTAGTGAGACTAGagaaga                                                                                                                                      <  6:158826/148‑1 (MQ=255)            gAATCATCGTCTGAACCGGTAGGCCAACCGCCATTACGATCTGACTTGCCACTTTGGCCGTTATCCCTATCTCTGGTCATACGCACCTCTCAATGCTCAGAAGTCCTGAGCTAAATTGAGTGTGCGCCTACAGAGACTAGAGAAGAttt                                                                                                                                   <  1:192816/149‑1 (MQ=255)             aaTCATCGTCTGAACCGGTAGGCCAACCGCCATTACGATCTGACTTGCCACTTTGGCCGTTATCCCTATCTCTGGTCATACGCACCTCTCAATGCTCAGAAGTCCTGAGCTAAATTGAGTGTGCGCCTACAGAGACTAGAGAAGATTta                                                                                                                                  <  2:214583/149‑1 (MQ=255)                  tcGTCTGAACCGGTAGGCCAACCGCCATTACGATCTGACTTGCCACTTTGGCCGTTATCCCTATCTCTGGTCATACGCACCTCTCAATGCTCAGAAGTCCTGAGCTAAATTGAGTGTGCGCCTACAGAGACTAGAGAAGATTTatat                                                                                                                               >  1:325823/1‑147 (MQ=255)                     tCTGAACCGGTAGGCCAACCGCCATTACGATCTGACTTGCCACTTTGGCCGTTATCCCTATCTCTGGTCATACGCACCTCTCAATGCTCAGAAGTCCTGAGCTAAATTGAGTGTGCGCCTACAGAGACTAGAGAAGATTtata                                                                                                                                >  1:368484/1‑143 (MQ=255)                     tCTGAACCGGTAGGCCAACCGCCATTACGATCTGACTTGCCACTTTGGCCGTTATCCCTATCTCTGGTCATACGCACCTCTCAATGCTCAGAAGTCCTGAGCTAAATTGAGTGTGCGCCTACAGAGACTAGAGAAGATTtata                                                                                                                                <  2:368484/143‑1 (MQ=255)                        gAACCGGTAGGCCAACCGCCATTACGATCTGACTTGCCACTTTGGCCGTTATCCCTATCTCTGGTCATACGCACCTCTCAATGCTCAGAAGTCCTGAGCTAAATTGAGTGTGCGCCTACAGAGACTAGAGAAGATTTATATCAGACCGa                                                                                                                       >  2:148861/1‑149 (MQ=255)                         aaCCGGTAGGCCAACCGCCATTACGATCTCACTTGCCACTTTGGCCGTTATCCCTATCTCTGGTCATACGCACCTCTCAATCCTCAGAAGTCCTTAGCTAAATTGAGTGTGCGCCTACAGAGACTAGAGAAGATTTATATCAGACCGAc                                                                                                                      <  6:20480/149‑1 (MQ=255)                          aCCGGTAGGCCAACCGCCATTACGATCTGACTTGCCACTTTGGCCGTTATCCCTATCTCTGGTCATACGCACCTCTCAATGCTCAGAAGTCCTGAGCTAAATTGAGTGTGCGCCTACAGAGACTAGAGAAGATTTATATCAGACCGAc                                                                                                                      <  6:219691/148‑1 (MQ=255)                                  gCCAACCGCCATTACGATCTGACTTGCCACTTTGGCCGTTATCCCTATCTCTGGTCATACGCACCTCTCAATGCTCAGAAGTCCTGAGCTAAATTGAGTGTGCGCCTACAGAGACTAGAGAAGATCTATATCAGACCGACGGGTACaaa                                                                                                             >  4:46141/1‑149 (MQ=255)                                   ccAACCGCCATTACGATCTGACTTGCCACTTTGGCCGTTATCCCTATCTCTGGTCATACGCACCTCTCAATGCTCAGAAGTCCTGAGCTAAATTGAGTGTGCGCCTACAGAGACTAGAGAAGATTTATATCAGACCGACGGGTACAAAc                                                                                                            <  2:99649/149‑1 (MQ=255)                                                   tCTGACTTGCCACTTTGGCCGTTATCCCTATCTCTGGTCATACGCACCTCTCAATGCTCAGAAGTCCTGAGCTAAATTGAGTGTGCGCCTACAGAGACTAGAGAAGATTTATATCAGACCGACGGGTACAAACGAAAAAATCAATAAcc                                                                                            >  8:5538/1‑149 (MQ=255)                                                       aCTTGCCACTTTGGCCGTTATCCCTATCTCTGGTCATACGCACCTCTCAATGCTCAGAAGTCCTGAGCTAAATTGAGTGTGCGCCTACAGAGACTAGAGAAGATTTATATCAGACCGACGGGTACAAACGAAAAAATCAATaa                                                                                              <  1:148861/143‑1 (MQ=255)                                                       aCTTGCCACTTTGGCCGTTATCCCTATCTCTGGCCATACGCACCTCTCAATGCTCAGAAGTCCTGAGCTAAATTGAGTGTGCGCCTACAGAGACTAGAGAAGATTTATATCAGACCGACGGGTACAAACGAAAAAATCAATAACCGGc                                                                                         <  3:159328/148‑1 (MQ=255)                                                         ttGCCACTTTGGCCGTTATCCCTATCTCTGGTCATACGCACCTCTCAATGCTCAGAAGTCCTGAGCTAAATTGAGTGTGCGCCTACAGAGACTAGAGAAGATTTATATCAGACCGACGGGTACAAACGAAAAAATCAATACCCGGCTcc                                                                                      >  8:261307/1‑149 (MQ=255)                                                         ttGCCACTTTGGCCGTTATCCCTATCTCTGGTCATACGCACCTCTCAATGCTCAGAAGTCCTGAGCTAAATTGAGTGTGCGCCTACAGAGACTAGAGAAGATTTATATCAGACCGACGGGTACAAACGAAAAAATCAATAACCGGCTcc                                                                                      >  5:20763/1‑149 (MQ=255)                                                              aCTTTGGCCGTTATCCCTATCTCTGGTCATACGCACCTCTCAATGCTCAGAAGTCCTGAGCTAAATTGATTGTGCGCCTACAGAGACTAGAGAAGATTTATATCAGACCGACGGGTACAAACGAAAAAATCAATAACCGGCTCCTGTCa                                                                                 <  5:108656/149‑1 (MQ=255)                                                              aCTTTGGCCGTTATCCCTATCTCTGGTCATACGCACCTCTCAATGCTCAGAAGTCCTGAGCTAAATTGAGTGTGCGCCTACAGAGACTAGAGAAGATTTATATCAGACCGACGGGTACAAACGAAAAAATCAATAACCGGCTCCTGt                                                                                   >  6:254946/1‑147 (MQ=255)                                                                           tCCCTATCTCTTGTCATACGCACCTCTCAATGCTCATAAGTCCTTAGCTAAATTGAGTGTGCGCCTACAGAGACTAGAGAAGATTTATATCAGACCGACGGGTACAAACGAAAAAATCAATAACCGGCTCCTGTCAGCACCTCGCagag                                                                    <  2:325823/149‑1 (MQ=255)                                                                            cccTATCTCTGGTCATACGCACCTCTCAATGCTCAGAAGTCCTGAGCTAAATTGAGTGTGCGCCTACAGAGACTAGAGAAGATTTATATCAGACCGACGGGTACAAACGAAAAAATCAATAACCGGCTCCTGTCAGCACCTCGCagag                                                                    >  5:19767/1‑148 (MQ=255)                                                                             ctagtctctgtaggcgcacactcaatttagctcaggacttctgagcattgagaggtgcgtatgaccagagaCTAGAGAAGATTTATATCAGACCGACGGGTACAAACGAAAAAATCAATAACCGGCTCCTGTCAGCACCTCGCAgaga                                                                   >  8:285233‑M2/72‑148 (MQ=255)                                                                              tagtctctgtaggcgcacactcaatttagctcaggacttctgagcattgagaggtgcgtatgaccagagaCTAGAGAAGATTTATATCAGACCGACGGGTACAAACGAAAAAATCAATAACCGGCTCCTGTCAGCACCTCGCAGAGaa                                                                  >  1:83938‑M2/71‑148 (MQ=255)                                                                                 TCTCTTGTCATACGCACCTCTCAATGCTCAGAAGTCCTGATCTAAATTGAGTGTGCGCCTACAGAGACTAGAGAAGATTTATATCAGACCGACGGGTACAAACGAAAAAATCAATAACCGGCTCCTGTCAGCACCTCGCAGAGaaaa                                                                >  1:179858‑M1/1‑147 (MQ=255)                                                                                  CTCTGGTCATACGCACCTCTCAATGCTCAGAAGTCCTGAGCTAAATTGAGTGTGCGCCTACAGAGACTAGAGAAGATTTATATCAGACCGACGGGTACAAACGAAAAAATCAATAACCGGCTCCTGTCAGCACCTCGCAGAGaaaa                                                                <  4:114817‑M1/146‑1 (MQ=255)                                                                                   TCTGGTCATACGCACCTCTCAATGCTCAGAAGTCCTGAGCTAAATTGAGTGTGCGCCTACAGAGACTAGAGAAGATTTATATCAGACCGACGGGTACAAACGAAAAAATCAATAACCGGCTCCTGTCAGCACCTCGCAGAGaaaa                                                                <  3:54588‑M1/145‑1 (MQ=255)                                                                                    CTGGTCATACGCACCTCTCAATGCTCAGAAGTCCTGAGCTAAATTGAGTGTGCGCCTACAGAGACTAGAGAAGATTTATATCAGACCGACGGGTACAAACGAAAAAATCAATAACCGGCTCCTGTCAGCACCTCGCAGAGAAAACAGa                                                            <  8:314543‑M1/148‑1 (MQ=255)                                                                                        tCATACGCACCTCTCAATGCTCAGAAGTCCTGAGCTAAATTGAGTGTGCGCCTACAGAGACTAGAGAAGATTTATATCAGACCGACGGGTACAAACGAAAAAATCAATAACCGGCACCTGTAAGCACCTCGCAGAGAAAACACATCg                                                         >  6:186018/1‑147 (MQ=255)                                                                                        tCATACGCACCTCTCAATGCTCAGAAGTCCTGAGCTAAATTGAGTGTGAGCCTACAGAGACTAGAGAAGATTTATATCAGACCGACGGGTACAAACGCAAAAATCAATAACCGGCTCCTGTCAGCACCTCGCAGAGAAAACAGATCg                                                         >  2:286524/1‑147 (MQ=255)                                                                                          aTACGCACCTCTCAATGCTCAGAAGTCCTGAGCTAAATTGAGTGTGCGCCTACAGAGACTAGAGAAGATTTATATCAGACCGACGGGTACAAACGAAAAAATCAATAACCGGCTCCTGTCAGCACCTCGCAGAGAAAACAGATCGCAg                                                      <  7:314543/148‑1 (MQ=255)                                                                                            aCGCACCTCTCAATGCTCAGAAGTCCTGAGCTAAATTGAGTGTGCGCCTACAGAGACTAGAGAAGATTTATATCAGACCGACGGGTAGAAACGAAAAAATCAATAACAGGCTCCTCTCAGCACCTCGCAGAGAAAACAGATCTCAGata                                                   >  3:118701/1‑149 (MQ=255)                                                                                            aCGCACCTCTCAATGCTCAGAAGTCCTGAGCTAAATTGAGTGTGCGCCTACAGAGACTAGAGAAGATTTATATCAGACCGACGGGTACAAACGAAAAAATCAATAACCGGCGCCTGTCAGCACATCGCAGAGAAAACAGATCGCAGata                                                   >  8:333528/1‑149 (MQ=255)                                                                                             cGCACCTCTCAATTCTCAGAAGTCCTGAGCTAAATTGAGTGTGCGCCTACAGAGACTAGAGAAGATTTATATCAGACCGACGGGTACAAACGAAAAAATCAATAACCGGCTCCTGTCAGCACCTCGCAGAGAAAACAGATCGCAGata                                                   <  5:186018/148‑1 (MQ=255)                                                                                                aCCTCTCAATGCTCAGAAGTCCTGAGCTAAATTGAGTGTGCGCCTACAGAGACTAGAGAAGATTTATATCAGACCGACGGGTACAAACGAAAAAATCAATAACCGGCTCCTGTCAGCACCTCGCAGAGAAAACAGATCGCAGATATTCa                                               <  7:5538/149‑1 (MQ=255)                                                                                                 ccTCTCAATGCTCAGAAGTCCTGAGCTAAATTGAGTGTGCGCCTACAGAGACTAGAGAAGATTTATATCAGACCGACGGGTACAAACGAAAAAATCAATAACCGGCTCCTGTCAGCACCTCGCAGAGAAAACAGATCGCAGATATTCAg                                              >  4:329186/1‑149 (MQ=255)                                                                                                   tctcAATGCTCAGAAGTCCTGAGCTAAATTGAGTGTGCGCCTACAGAGACTAGAGAAGATTTATATCAGACCGACGGGTACAAACGAAAAAATCAATAAcc                                                                                            >  8:16491/1‑101 (MQ=255)                                                                                                   tctcAATGCTCAGAAGTCCTGAGCTAAATTGAGTGTGCGCCTACAGAGACTAGAGAAGATTTATATCAGACCGACGGGTACAAACGAAAAAATCAATAAcc                                                                                            <  7:16491/101‑1 (MQ=255)                                                                                                     tcAATGCTCAGAAGTCCTGAGCTAAATTGAGTGTGCGCCTACAGAGACTAGAGAAGATCTATATCAGACCGACGGGTACAAACGAAAAAATCAATAACCGGCTCCTGTCAGCACCTCGCAGAGAAAACAGATCGCAGATATTCAGCa                                            <  3:46141/147‑1 (MQ=255)                                                                                                       aaTGCTCAGAAGTCCTGAGCTAAATTGAGTGTGCGCCTACAGAGACTAGAGAAGATTTATATCAGACCGACGGGTACAAACGAAAAAATCAATAACCGGCTCCTGTCAGCACCTCGCAGAGAAAACAGATAGCAGATATTCAGCATGCg                                        >  7:256620/1‑149 (MQ=255)                                                                                                           cTCAGAAGTCCTGAGCTAAATTGAGTGTGCGCCTACAGAGACTAGAGAAGATTTATATCAGACCGACGGGTACAAACGAAAAAATCAATAACCGGCTCCTGTCAGCACCTCGCAGAGAAAACAGATCGCAGATATTCAGCATGCGTAGc                                    >  7:166765/1‑149 (MQ=255)                                                                                                            tCAGAAGTCCTGAGCTAAATTGAGTGTGCGCCTACAGAGACTAGAGAAGATTTATATCAGACCGACGGGTACAAACGAAAAAATCAATAACCGGCTCCTGTCAGCACCTCGCAGAGAAAACAGATCGCAGATATTCAGCATGCGTAGCt                                   >  8:13038/1‑149 (MQ=255)                                                                                                            tCAGAAGTCCTGAGCTAAATTGAGTGTGCGCCTACAGAGACTAGAGAAGATTTATATCAGACCGACGGGTACAAACGAAAAAATCAATAACCGGCTCCTGTCAGCACCTCGCAGAGAAAACAGATCGCAGATATTCAGCATGCGTAGCt                                   >  7:254679/1‑149 (MQ=255)                                                                                                              aggacttctgagcattgagaggtgcgtatgaccagagaCTAGAGAAGATTTATATCAGACCGACGGGTACAAACGAAAAAATCAATAACCGGCTCCTGTCAGCACCTCGCAGAGAAAACAGATCGCAGATATTCAGCATGCGTAGCt                                   <  7:285233‑M2/109‑1 (MQ=255)                                                                                                              aGAAGTCCTGAGCTAAATTGAGTGTGCGCCTACAGAGACTAGAGAAGATTTATATCAGACCGACGGGTACAAACGAAAAAATCAATAACCGGCTCCTGTCAGCACCTCGCAGAGAAAACAGATCGCAGATATTCAGCATGCGTAGCTGa                                 <  7:261307/149‑1 (MQ=255)                                                                                                                aaGTCCTGAGCTAAATTGAGTGTGCGCCTACAGAGACTAGAGAAGATTTATATCAGACCGACGGGTACAAACGAAAAAATCAATAACCGGCTCCTGTCAGCACCTCGCAGAGAAAACAGATCGCAGATATTCAGCATGCGTAGCTGATg                               >  4:320968/1‑149 (MQ=255)                                                                                                                     cTGAGCTAAATTGAGTGTGCGCCTACAGAGACTAGAGAAGATTTATATCAGACCGACGGGTACAAACGAAAAAATCAATAACCGGCTCCTGTCAGCACCTCGCAGAGAAAACAGATCGCAGa                                                     <  2:80734/122‑1 (MQ=255)                                                                                                                     cTGAGCTAAATTGAGTGTGCGCCTACAGAGACTAGAGAAGATTTATATCAGACCGACGGGTACAAACGAAAAAATCAATAACCGGCTCCTGTCAGCACCTCGCAGAGAAAACAGATCGCAGa                                                     >  1:80734/1‑122 (MQ=255)                                                                                                                      tGAGCTAAATTGAGTGTGCGCCTACAGAGACTAGAGAAGATTTATATCAGACCGACGGGTACAAACGAAAAAATCAATAACCGGCTCCTGTCAGCACCTCGCAGAGAAAACAGATCGCAGATATTCAGCATGCGTAGCTGATGCTCGAc                         >  4:226244/1‑149 (MQ=255)                                                                                                                        aGCTAAATTGAGTGTGCGCCTACAGAGACTAGAGAAGATTTATATCAGACCGACGGGTACAAACGAAAAAATCAATAACCGGCTCCAGTCAGCACCTCGCAGAGAAAACAGATCGCAGATATTCAGCATGCGTAGCTGATGCTCGAcc                        >  5:255103/1‑148 (MQ=255)                                                                                                                             aaTTGAGTGTGCGCCTACAGAGACTAGAGAAGATTTATATCAGACCGACGGGTACAAACGAAAAAATCAATAACCGGCTCCTGTCAGCACCTCGCAGAGAAAACAGATCGCAGATATTCAGCATGCGTAGCTGATGCTCGACCGAGATc                  <  3:226244/149‑1 (MQ=255)                                                                                                                             aaTTGAGTGTGCGCCTACAGAGACTAGAGAAGATTTATATCAGACCGACGGGTACAAACGAAAAAATCAATAACAGGCTCCTGTCAGCACCTCGCAGAGAAAACAGATCGCAGATATTCAGCATGCGTAGCTGATGCTCGAcc                        >  8:80981/1‑143 (MQ=255)                                                                                                                               ttGAGTGTGCGCCTACAGAGACTAGAGAAGATTTATATCAGACCGACGGGTACAAACGAAAAAATCAATAACCGGCTCCTGTCAGCACCTCGCAGAGAAAACAGATCGCAGATATTCAGCATGCGTAGCTGATGCTCGACCGAGATCGc                <  4:54588/149‑1 (MQ=255)                                                                                                                                  aGTGTGCGCCTACAGAGACTAGAGAAGATTTATATCAGACCGACGGGTACAAACGAAAAAATCAATAACCGGCTCCTGTCAGCACCTCGCAGAGAAAACAGATCGCAGATATTCAGCATGCGTAGCTGATGCTCGACCGAGATCGCAcc             <  6:19767/149‑1 (MQ=255)                                                                                                                                   gtgtGCGCCTACAGAGACTAGAGAAGATTTATATCAGACCGACGGGTACAAACGAAAAAATCAATAACCGGCTCCTGTCAGCACCTCGCAGAGAAAACAGATCGCAGATATTCAGCATGCGTAGCTGATGCTCGACCGAGATCGCACCt            <  7:13038/149‑1 (MQ=255)                                                                                                                                             aCAGAGACTAGAGAAGATTTATATCAGACCGACGGGTACAAACGAAAAAATCAATAACCGGCTCCTGTCAGCACCTCGCAGAGAAAACAGATCGCAGATATTCAGCATGCGTAGCTGATGCTCGACCGAGATCGCACCTGACATGCAcc  >  4:284433/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                              GGGCCCTCTTGGAATCATCGTCTGAACCGGTAGGCCAACCGCCATTACGATCTGACTTGCCACTTTGGCCGTTATCCCTATCTCTGGTCATACGCACCTCTCAATGCTCAGAAGTCCTGAGCTAAATTGAGTGTGCGCCTACAGAGACTAGAGAAGATTTATATCAGACCGACGGGTACAAACGAAAAAATCAATAACCGGCTCCTGTCAGCACCTCGCAGAGAAAACAGATCGCAGATATTCAGCATGCGTAGCTGATGCTCGACCGAGATCGCACCTGACATGCACC  >  NC_002947/4425328‑4425616

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.