New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4561192 =	49 (0.770)	3 (0.050)	3/252	NT	6.1%	coding (357/1404 nt)	PP_4048	hypothetical protein
	?	NC_002947	4561273 =	46 (0.760)					coding (276/1404 nt)	PP_4048	hypothetical protein

AAGCGCTACGCGGCGGACGGCAGCCAGGCAACGCCGCAGCCGCCGGAATGGCAAGAGTGGGTGTTGCTGGTGGCCTGCCTGATGACCCTGATCGCGCCGATCATCGGCGCTGTGGTGGGGGCGGTGGGCACTCCCGTGGGCTCGATGGCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4561344‑4561192 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcaggcCACCAGCAACACCCACTCTTGCCATTCCGGCGGCTGCGGCGTTGCCTGGCTGCCGTCCGCCGCGTAGCGCTTGCCCAGGCGCAGGCACACCGCAGCCAGGTCACGGGCACTGAGCACAATCACCACCCCCGGCACCAACGACAGCAGC  >  NC_002947/4561273‑4561420                                                                                                                                                                                                                                                                                                               AAGCGCTACGCGGCGGACGGCAGCCAGGCAACGCCGCAGCCGCCGGAATGGCAAGAGTGGGTGTTGCTGGTGGCCTGCCTGATGACCCTGATCGCGCCGATCATCGGCGCTGTGGTGGGGGCGGTGGGCACTCCCGTGGGCTCGATGG                                                                                                                                                           >  5:117727/1‑148  AGCGCTACGCGGCGGACGGCAGCCAGGCAACGCCGCAGCCGCCGGAATGGCAAGAGTGGGTGTTGCTGGTGGCCTGCCTGATGACCCTGATCGCGCCGATCATCGGCGCTGTGGTGGGGGCGGTGGGCACTCCCGTGGGCTCGATGGCA                                                                                                                                                         <  6:62754/149‑1   GCGCTACGCGGCGGACGGCAGCCAGGCAACGCCGCAGCCGCCGGAATGGCAAGAGTGGGTGTTGCTGGTGGCCTGCCTGATGACCCTGATCGCGCCGATCATCGGCGCTGTGGTGGGGGCGGTGGGCACTCCCGTGGGCTCGATGGCAG                                                                                                                                                        <  6:360671/149‑1                                                                         GCCTGCCTGATGACCCTGATCGCGCCGATCATCGGCGCTGTGGTGGGGGCGGTGGGCACTCCCGTGGGCTCGATGGCAGGCCACCAGCAACACCCACTCTTGCCATTCCGGCGGCTGCGGCGTTGCCTGGCTGCCGTCCGCAGCGTAGC                                                                                  >  8:81879/1‑149                                                                          CCTGCCTGATGACCCTGATCGCGCCGATCATCGGCGCTGTGGTGGGGGCGGTGGGCACTCCCGTGGGCTCGATGGCAGGCCACCAGCAACACCCACTCTTGCCATTCCGGCGGCTGCGGCGTTGCCTGGCTGCCGTCCGCCGCGTAGCG                                                                                 >  1:178762/1‑149                                                                                     ACCCTGATCGCGCCGATCATCGGCGCTGTGGTGGGGGCGGTGGGCACTCCCGTGGGCTCGATGGCAGGCCACCAGCAACACCCACTCTTGCCATTCCGGCGGCTGCGGCGTTGCCTGGCTGCCGTCCGCCGCGTAGCGCTTGCCCAGG                                                                       <  2:178762/148‑1                                                                                                                                                         CCACCAGCAACACCCACTCTTGCCATTCCGGCGGCTGCGGCGTTGCCTGGCTGCCGTCCGCCGCGTAGCGCTTGCCCAGGCGCAGGCACACCGCAGCCAGGTCACGGGCACTGAGCACAATCACCACCCCCGGCACCAACGACAGCAGC  <  7:98395/149‑1                                                                                                                                                                                                                                                                                                               AAGCGCTACGCGGCGGACGGCAGCCAGGCAACGCCGCAGCCGCCGGAATGGCAAGAGTGGGTGTTGCTGGTGGCCTGCCTGATGACCCTGATCGCGCCGATCATCGGCGCTGTGGTGGGGGCGGTGGGCACTCCCGTGGGCTCGATGGCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4561344‑4561192 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcaggcCACCAGCAACACCCACTCTTGCCATTCCGGCGGCTGCGGCGTTGCCTGGCTGCCGTCCGCCGCGTAGCGCTTGCCCAGGCGCAGGCACACCGCAGCCAGGTCACGGGCACTGAGCACAATCACCACCCCCGGCACCAACGACAGCAGC  >  NC_002947/4561273‑4561420

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.