New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 4561192 =49 (0.770)3 (0.050) 3/252 NT 6.1% coding (357/1404 nt) PP_4048 hypothetical protein
?NC_002947 4561273 = 46 (0.760)coding (276/1404 nt) PP_4048 hypothetical protein

ACCTGACCTGGTGCAGCCAGAACTCCACGCTGCCGCGGGTGAACTTGCCGAGAAACGCAACCACTGTCTGCAGGATGACCTGACTTTCACGTATCAACAGCAAGCACAAACCACGCAAGAACGCTGCTGCTTCCTGCCCAACCAGTGCGCCTGCCATCGAGCCCACGGGAGTGCCCACCGCCCCCACCACAGCGCCGATGATCGGCGCGATCAGGGTCATCAGGCAGGCCACCAGCAACACCCACTCTTGCCATTCCGGCGGCTGCGGCGTTGCCTGGCTGCCGTCCGCCGCGTA  >  NC_002947/4561044‑4561338
                                                                                                                                                    |                                                                                                                                                   
gctgctgtcgttggtgccgggggtggtgattgtgctcagtgcccgtgacctggctgcggtgtgcctgcgcctgggcaagcgctacgcggcggacggcagccaggcaacgccgcagccgccggaatggcaagagtgggtgttgctggtgg                                                                                                                                                     <  7:98395‑M1/1‑1 (MQ=255)
  ctgacctgGTGCAGCCAGAACTCCACGCTGCCGCGGGTGAACTTGCCGAGAAACGCAACCACTGTCTGCAGGATGACCTGACTTTCACGTATCAACAGCAAGCACAAACCACGCAAGAACGCTGCTGCTTCCTGCCCAACCAGTGCGcc                                                                                                                                                   >  1:290601/1‑149 (MQ=255)
   tgacctgGTGCAGCCAGAACTCCACGCTGCCGCGGGTGAACTTGCCGAGAAACGCAACCACTGTCTGCAGGATGACCTGACTTTCACGTATCAACAGCAAGCACAAACCACGCAAGAACGCTGCTGCTTCCTGCCCAACCAGTGCGCCt                                                                                                                                                  >  2:32304/1‑149 (MQ=255)
          gTGCAGCCAGAACTCCACGCTGCCGCGGGTGAACTTGCCGAGAAACGCAACCACTGTCTGCAGGATGACCTGACTTTCACGTATCAACAGCAAGCACAAACCACGCAAGAACGCTGCTGCTTCCTGCCCAACCAGTGCGCCTGCCAt                                                                                                                                             <  7:225502/147‑1 (MQ=255)
           tGCAGCCAGAACTCCACGCTGCCGCGGGTGAACTTGCCGAGAAACGCAACCACTGTCTGCAGGATGACCTGACTTTCACGTATCAACAGCAAGCACAAACCACGCAAGAACGCTGCTGCTTCCTGCCCAACCAGTGCGCCTGCCATCGa                                                                                                                                          <  4:140977/149‑1 (MQ=255)
               gCCAGAACTCCACGCTGCCGCGGGTGAACTTGCCGAGAAACGCAACCACTGTCTGCAGGATGACCTGACTTTCACGTATCAACAGCAAGCACAAACCCCGCAAGAACGCTGCTGCTTCCTGCCCAACCAGTGCGCCGGCCATCGAGccc                                                                                                                                      >  8:120985/1‑149 (MQ=255)
               gCCAGAACTCCACGCTGCCGCGGGTGAACTTGCCGAGAAACGCAACCACTGTCTGCAGGATGACCTGACTTTCACGTATCAACAGCAAGCACAAACCACGCAAGAACGCTGCTGCTTCCTGCCCAACCAGTGCGCCTGCCATCGAGcc                                                                                                                                       >  1:352307/1‑148 (MQ=255)
                   gAACTCCACGCTGCCGCGGGTGAACTTGCCGAGAAACGCAACCACTGTCTGCAGGATGACCTGACTTTCACGTATCAACAGCAAGCACAAACCACGCAAGAACGCTGCTGCTTCCTGCCCAACCAGTGCGCCTGCCATCGAGCCCACgg                                                                                                                                  <  2:290601/149‑1 (MQ=255)
                   gAACTCCACGCTGCCGCGGGTGAACTTGCCGAGAAACGCAACCACTGTCTGCAGGATGACCTGACTTTCACGTATCAACAGCAAGCACAAACCACGCAAGAACGCTGCTGCTTCCTGCCCAACCAGTGCGCCTGCCATCGAGCCCACgg                                                                                                                                  <  1:336156/149‑1 (MQ=255)
                     aCTCCACGCTGCCGCGGGTGAACTTGCCGAGAAACGCAACCACTGTCTGCAGGATGACCTGACTTTCACGTATCAACAGCAAGCACAAACCACGCAAGATCGCTGCTGCTTCCTGCCCAACCAGTGCGCCTGCCATCGAGCCCACGGGa                                                                                                                                <  1:374973/149‑1 (MQ=255)
                     aCTCCACGCTGCCGCGGGTGAACTTGCCGAGAAACGCAACCACTGTCTGCAGGATGACCTGACTTTCACGTATCAACAGCAAGCACAAACCACGCAAGAACGCTGCTGCTTCCTGCCCAACCAGTGCGCCTGCCATCGAGCCCACGGGa                                                                                                                                <  3:308961/149‑1 (MQ=255)
                       tCCACGCTGCCGCGGGTGAACTTGCCGAGAAACGCAACCACTGTCTGCAGGATGACCTGACTTTCACGTATCAACAGCAAGCACAAACCACGCAAGAACGCTGCTGCTTCCTGCCCAACCAGTGCGCCTGCCATCGAGCCCACGGGAGt                                                                                                                              >  1:283374/1‑149 (MQ=255)
                        ccACGCTGCCGCGGGTGAACTTGCCGAGAAACGCAACCACTGTCTGCAGGATGACCTGACTTTCACGTATCAACAGCAAGCACAAACCACGCAAGAACGCTGCTGCTTCCTGCCCAACCAGTGCGCCTGCCATCGAGCCCACGGGAGTg                                                                                                                             <  2:90928/149‑1 (MQ=255)
                         cACGCTGCCGCGGGTGAACTTGCCGAGAAACGCAACCACTGTCTGCAGGATGACCTGACTTTCACGTATCAACAGCAAGCACAAACCACGCAAGAACGCTGCTGCTTCCTGCCCAACCAGTGCGCCTGCCATCGAGCCCACGGGAGTg                                                                                                                             <  5:181744/148‑1 (MQ=255)
                                ccGCGGGTGAACTTGCCGAGAAACGCAACCACTGTCTGCAGGATGACCTGACTTTCACGTATCAACAGCAAGCACAAACCACGCAAGAACGCTGCTGCTTCCTGCCCAACCAGTGCGCCTGCCATCGAGCCCACGGGAGTGCCCAcc                                                                                                                       <  5:105765/147‑1 (MQ=255)
                                         aaCTTGCCGAGAAACGCAACCACTGTCTGCAGGATGACCTGACTTTCACGTATCAACAGCAAGCACAAACCACGCAAGAACGCTGCTGCTTCCTGCCCAACCAGTGCGCCTGCCATCGAGCCCACGGGAGTGCCCACCGCCCccacca                                                                                                            >  1:110053/1‑148 (MQ=255)
                                              gCCGAGAAACGCAACCACTGTCTGCAGGATGACCTGACTTTCACGTATCAACAGCAAGCACAAACCACGCAAGAACGCTGCTGCTTCCTGCCCAACCAGTGCGCCTGCCATCGAGCCCACGGGAGTGCCCACCGCCCCCACCACAgcgc                                                                                                      >  8:304411/1‑149 (MQ=255)
                                              gCCGAGAAACGCAACCACTGTCTGCAGGATGACCTGACTTTCACGTATCAACAGCAAGCACAAACCACGCAAGAACGCTGCTGCTTCCTGCCCAACCAGTGCGCCTGCCATCGAGCCCACGGGAGTGCCCACCGCCCCCACCACAgc                                                                                                        <  7:326091/147‑1 (MQ=255)
                                                cGAGAAACGCAACCACTGTCTGCAGGATGACCTGACTTTCACGTATCAACAGCAAGCACAAACCACGCAAGAACGCTGCTGCTTCCTGCCCAACCAGTGCGCCTGCCATCGAGCCCACGGGAGTGCCCACCGCCCCCCACCACAGCGcc                                                                                                     >  8:116516/1‑149 (MQ=255)
                                                 gagaAACGCAACCACTGTCTGCAGGATGACCTGACTTTCACGTATCAACAGCAAGCACAAACCACGCAAGAACGCTGCTGCTTCCTGCCCAACCAGTGCGCCTGCCATCGAGCCCACGGGAGTGCCCACCGCCCCCACCACAGCGCCga                                                                                                   >  4:175352/1‑149 (MQ=255)
                                                  agaAACGCAACCACTGTCTGCAGGATGACCTGACTTTCACGTATCAACAGCAAGCACAAACCACGCAAGAACGCTGCTGCTTCCTGCCCAACCAGTGCGCCTGCCATCGAGCCCACGGGAGTGCCCACCGCCCCCACCACAGCGCCgat                                                                                                  >  5:124267/1‑149 (MQ=255)
                                                        gCAACCACTGTCTGCAGGATGACCTGACTTTCACGTATCAACAGCAAGCACAAACCACGCAAGAACGCTGCTGCTTCCTGCCCAACCAGTGCGCCTGCCATCGAGCCCACGGGAGTGCCCACCGCCCCCACCACAGCGCCGATGATCgg                                                                                            >  5:331441/1‑149 (MQ=255)
                                                        gCAACCACTGTCTGCAGGATGACCTGACTTTCACGTATCAACAGCAAGCACAAACCACGCAAGAACGCTGCTGCTTCCTGCCCAACCAGTGCGCCTGCCATCGAGCCCACGGGAGTGCCCACCGCCCCCACCACAGCGCCGATGATCgg                                                                                            >  3:362520/1‑149 (MQ=255)
                                                          aaCCACTGTCTGCAGGATGACCTGACTTTCACGTATCAACAGCAAGCACAAACCACGCAAGAACGCTGCTGCTTCCTGCCCAACCAGTGCGCCTGCCATCGAGCCCACGGGAGTGCCCACCGCCCCCACCACAGCGCCGATGATCGgcg                                                                                          <  7:304411/149‑1 (MQ=255)
                                                             cACTGTCTGCAGGATGACCTGACTTTCACGTATCAACAGCAAGCACAAACCACGCAAGAACGCTGCTGCTTCCTGCCCAACCAGTGCGCCTGCCATCGAGCCCACGGGAGTCCCCACCGCCCCCACCACAGCGCCGATGATCGGCGCGa                                                                                       <  1:213164/149‑1 (MQ=255)
                                                                  tCTGCAGGATGACCTGACTTTCACGTATCAACAGCAAGCACAAACCACGCAAGAACGCTGCTGCTTCCTGCCCAACCAGTGCGCCTGCCATCGAGCCCACGGGAGTGCCCACCGCCCCGACCACAGCGCCGATGATCGGCGCGATCAgg                                                                                  <  1:32304/149‑1 (MQ=255)
                                                                  tCTGCAGGATGACCTGACTTTCACGTATCAACAGCAAGCACAAACCACGCAAGAACGCTGCTGCTTCCTGCCCAACCAGTGCGCCTGCCATCGAGCCCACGGGAGTGCCCACCGCCCCCACCACAGCGCCGATGATc                                                                                              >  3:56731/1‑137 (MQ=255)
                                                                  tCTGCAGGATGACCTGACTTTCACGTATCAACAGCAAGCACAAACCACGCAAGAACGCTGCTGCTTCCTGCCCAACCAGTGCGCCTGCCATCGAGCCCACGGGAGTGCCCACCGCCCCCACCACAGCGCCGATGATc                                                                                              <  4:56731/137‑1 (MQ=255)
                                                                  tCTGCAGGATGACCTGACTTTCACGTATCAACAGCAAGCACAAACCACGCAAGAACGCTGCTGCTTCCTGCCCAACCAGTGCGCCTGCCATCGAGCCCACGGGAGTGCCCACCGCCCCCACCACAGCGCCGATGATCGGCGCGATCAgg                                                                                  <  3:175352/149‑1 (MQ=255)
                                                                  tCTGCAGGATGACCTGACTTTCACGTATCAACAGCAAGCACAAACCACGCAAGAACGCTGCTGCTTCCTGCCCAACCAGTGCGCCTGCCATCGAGCCCACGGGAGTGCCCACCGCCCCCACCACAGCGCCGATGATCGGCGCGATCAgg                                                                                  <  6:331441/149‑1 (MQ=255)
                                                                  tCTGCAGGATGACCTGACTTTCACGTATCAACAGCAAGCACAAACCACGCAAGAACGCTGCTGCTTCCTGCCCAACCAGTGCGCCTGCCATCGAGCCCACGGGAGTGCCCACCGCCCCCACCACAGCGCCGATGATCGGCGCGATCAgg                                                                                  <  2:283374/149‑1 (MQ=255)
                                                                     cctgggcaagcgctacgcggcggacggcagccaggcaacgccgcagccgccggaatggcaagagtgggtgttgctggtgGCCTGCCATCGAGCCCACGGGAGTGCCCACCGCCCCCACCACAGCGCCGATGATCGGCGCGATCAGGGt                                                                                <  2:178762‑M1/69‑1 (MQ=255)
                                                                         gATGACCTGACTTTCACGTATCAACAGCAAGCACAAACCACGCAAGAACGCTGCTGCTTCCTGCCCAACCAGTGCGCCTGCCATCGAGCCCACGGGAGTGCCCACCGCCCCCACCACAGCGCCGATGATCGGCGCGATCAGGGtcatca                                                                           <  5:248777/149‑1 (MQ=255)
                                                                              ccTGACTTTCACGTATCAACAGCAAGCACAAACCACGCAAGAACGCTGCTGCTTCCTGCCCAACCAGTGCGCCTGCCATCGAGCCCACGGGAGTGCCCACCGCCCCCACCACAGCGCCGATGATCGGCGCGATCAGGGTCATcaggcag                                                                      >  6:77626/1‑149 (MQ=255)
                                                                               cgctacgcggcggacggcagccaggcaacgccgcagccgccggaatggcaagagtgggtgttgctggtgGCCTGCCATCGAGCCCACGGGAGTGCCCACCGCCCCCACCACAGCGCCGATGATCGGCGCGATCAGGGTCATcaggcagg                                                                     >  1:178762‑M1/70‑149 (MQ=255)
                                                                               cTGACTTTCACGTATCAACAGCAAGCACAAACCACGCAAGAACGCTGCTGCTTCCTGCCCAACCAGTGCGCCTGCCATCGAGCCCACGGGAGTGCCCACCGCCCCCCACCACAGCGCCGATGATCGGCGCGATCAGGGTCATcaggcag                                                                      <  7:116516/149‑1 (MQ=255)
                                                                                gctacgctgcggacggcagccaggcaacgccgcagccgccggaatggcaagagtgggtgttgctggtgGCCTGCCATCGAGCCCACGGGAGTGCCCACCGCCCCCACCACAGCGCCGATGATCGGCGCGATCAGGGTCATCaggcaggc                                                                    >  8:81879‑M1/69‑149 (MQ=255)
                                                                                   cTTTCACGTATCAACAGCAAGCACAAACCACGCAAGAACGCTGCTGCTTCCTGCCCAACCAGTGCGCCTGCCATCGAGCCCACGGGAGTGCCCACCGCCCCCACCACAGCGCCGATGATCGGCGCGATCAGGGTCATCAGGCAGGccac                                                                 <  6:124267/149‑1 (MQ=255)
                                                                                        aCGTATCAACAGCAAGCACAAACCACGCAAGAACGCTGCTGCTTCCTGCCCAACCAGTGCGCCTGCCATCGAGCCCACGGGAGTGCCCACCGCCCCCACCACAGCGCCGATGATCGGCGCGATCAGGGTCATCAGGCAGGCCACCAGc                                                             >  5:63423/1‑148 (MQ=255)
                                                                                        aCGTATCAACAGCAAGCACAAACCACGCAAGAACGCTGCTGCTTCCTGCCCAACCAGTGCGCCTGCCATCGAGCCCACGGGAGTGCCCACCGCCCCCACCACAGCGCCGATGATCGGCGCGATCAGGGTCATCAGGCAGGCCACCAGc                                                             <  5:77626/148‑1 (MQ=255)
                                                                                                aCAGCAAGCACAAACCACGCAAGAACGCTGCTGCTTCCTGCCCAACCAGTGCGCCTGCCATCGAGCCCACGGGAGTGCCCACCGCCCCCACCACAGCGCCGATGATCGGCGCGATCAGGGTCATCAGGCAGGCCACCAGCAACACCCAc                                                    >  5:377789/1‑149 (MQ=255)
                                                                                                        cacaAACCACGCAAGAACGCTGCTGCTTCCTGCCCAACCAGTGCGCCTGCCATCGAGCCCACGGGAGTGCCCACCGCCCCCACCACAGCGCCGATGATCGGCGCGATCAGGGTCATCAGGCAGGCCACCAGCAACACCCACTCTTGCCa                                            >  6:117727/1‑149 (MQ=255)
                                                                                                          caAACCACGCAAGAACGCTGCTGCTTCCTGCCCAACCAGTGCGCCTGCCATCGAGCCCACGGGAGTGCCCACCGCCCCCACCACAGCGCCGATGATCGGCGCGATCAGGGTCATCAGGCAGGccacca                                                               >  5:273772/1‑128 (MQ=255)
                                                                                                          caAACCACGCAAGAACGCTGCTGCTTCCTGCCCAACCAGTGCGCCTGCCATCGAGCCCACGGGAGTGCCCACCGCCCCCACCACAGCGCCGATGATCGGCGCGATCAGGGTCATCAGGCAGGccacca                                                               <  6:273772/128‑1 (MQ=255)
                                                                                                           aaaCCACGCAAGAACGCTGCTGCTTCCTGCCCAACCAGTGCGCCTGCCATCGAGCCCACGGGAGTGCCCACCGCCCCCACCACAGCGCCGATGATCGGCGCGATCAGGGTCATCAGGCAGGCCACCAGCAACACCCACTCTTGCCATTc                                         >  2:198308/1‑149 (MQ=255)
                                                                                                                  gCAAGAACGCTGCTGCTTCCTGCCCAACCAGTGCGCCTGCCATCGAGCCCACGGGAGTGCCCACCGCCCCCACCACAGCGCCGATGATCGGCGCGATCAGGGTCATCAGGCAGGCCACCAGCAACACCCACTCTTGCCATTCCggcggc                                  >  3:321039/1‑149 (MQ=255)
                                                                                                                           ctgctgctTCCTGCCCAACCAGTGCGCCTGCCATCGAGCCCACGGGAGTGCCCACCGCCCCCACCACAGCGCCGATGATCGGCGCGATCAGGGTCATCAGGCAGGCCACCAGCAACACCCACTCTTGCCATTCCGGCGGCTGCGGCGtt                         <  4:321039/149‑1 (MQ=255)
                                                                                                                                 ctTCCTGCCCCCCCAGTGCGCCTGCCATCGAGCCCACGGGAGTGCCCACCGCCCCCACCACAGCGCCGATGATCGGCGCGATCAGGGGCATCAGGCAGGCCACCAGCAACACCCACTCTTGCCATTCCGGCGGCTGCGGCGTTGCCTg                    <  7:120985/148‑1 (MQ=255)
                                                                                                                                    ccTGCCCAACCAGTGCGCCTGCCATCGAGCCCACGGGAGTGCCCACCGCCCCCACCACAGCGCCGATGATCGGCGCGATCAGGGTCATCAGGCAGGCCACCAGCAACACCCACTCTTGCCATTCCGGCGGCTGCGGCGTTGCCTGGcgt                >  5:110825/1‑147 (MQ=255)
                                                                                                                                    ccTGCCCAACCAGTGCGCCTGCCATCGAGCCCACGGGAGTGCCCACCGCCCCCACCACAGCGCCGATGATCGGCGCGATCAGGGTCATCAGGCAGGCCACCAGCAACACCCACTCTTGCCATTCCGGCGGCTGCGGCGTTGCCTGGCt                 <  6:63423/148‑1 (MQ=255)
                                                                                                                                      tGCCCAACCAGTGCGCCTGCCATCGAGCCCACGGGAGTGCCCACCGCCCCCACCACAGCGCCGATGATCGGCGCGATCAGGGTCATCAGGCAGGCCACCAGCAACACCCACTCTTGCCATTCCGGCGGCTGCGGCGTTGCCTGGCTGcc              >  6:327352/1‑149 (MQ=255)
                                                                                                                                        cccAACCAGTGCGCCTGCCATCGAGCCCACGGGAGTGCCCACCGCCCCCACCACAGCGCCGATGATCGGCGCGATCAGGGTCATCAGGCAGGCCACCAGCAACACCCACTCTTGCCATTCCGGCGGCTGCGGCGTTGCCTGGCTGCCGt            >  5:44308/1‑149 (MQ=255)
                                                                                                                                           aaCCAGTGCGCCTGCCATCGAGCCCACGGGAGTGCCCACCGCCCCCACCACAGCGCCGATGATCGGCGCGATCAGGGTCATCAGGCAGGCCACCAGCAACACCCACTCTTGCCATTCCGGCGGCTGCGGCGTTGCCTGGCTGCCGTccg         >  1:189728/1‑149 (MQ=255)
                                                                                                                                              cAGTGCGCCTGCCATCGAGCCCACGGGAGTGCCCACCGCCCCCACCACAGCGCCGATGATCGGCGCGATCAGGGTCATCAGGCCGGCCACCAGCAACACCCACTCTTGCCATTCCGGCGGCTGCGGCGTTGCCTGGCTGCCGTccgccg      >  6:57739/1‑149 (MQ=255)
                                                                                                                                              cAGTGCGCCTGCCATCGAGCCCACGGGAGTGCCCACCGCCCCCACCACAGCGCCGATGATCGGCGCGATCAGGGTCATCAGGCAGGCCACCAGCAACACCCACTCTTGCCATTCCGGCGGCTGCGGCGTTGCCTGGCTGCCGTccgccg      >  5:217478/1‑149 (MQ=255)
                                                                                                                                               aGTGCGCCTGCCATCGAGCCCACGGGAGTGCCCACCGCCCCCACCACAGCGCCGATGATCGGCGCGATCAGGGTCATCAGGCAGGCCACCAGCAACACCCACTCTTGCCATTCCGGCGGCTGCGGCGTTGCCTGGCTGCCGTCcgccgc     <  4:362520/149‑1 (MQ=255)
                                                                                                                                                gTGCGCCTGCCATCGAGCCCACGGGAGTGCCCACCGCCCCCACCACAGCGCCGATGATCGGCGCGATCAGGGTCATCAGGCAGGCCACCAGCAACACCCACTCTTGCCATTCCGGCGGCTGCGGCGTTGCCTGGCTGCCGTCCGCcgcg    <  1:198308/149‑1 (MQ=255)
                                                                                                                                                   cgcCTGCCATCGAGCCCACGGGAGTGCCCACCGCCCCCACCACAGCGCCGATGATCGGCGCGATCAGGGTCATCAGGCAGGCCACCAGCAACACCCACTCTTGCCATTCCGGCGGCTGCGGCGTTGCCTGGCTGCCGTCCGCCGCGTa  <  2:110053/148‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                                   
ACCTGACCTGGTGCAGCCAGAACTCCACGCTGCCGCGGGTGAACTTGCCGAGAAACGCAACCACTGTCTGCAGGATGACCTGACTTTCACGTATCAACAGCAAGCACAAACCACGCAAGAACGCTGCTGCTTCCTGCCCAACCAGTGCGCCTGCCATCGAGCCCACGGGAGTGCCCACCGCCCCCACCACAGCGCCGATGATCGGCGCGATCAGGGTCATCAGGCAGGCCACCAGCAACACCCACTCTTGCCATTCCGGCGGCTGCGGCGTTGCCTGGCTGCCGTCCGCCGCGTA  >  NC_002947/4561044‑4561338

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.