New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4561859	46 (0.720)	3 (0.050)	3/260	NT	5.9%	coding (2002/2316 nt)	vgrG‑III	type VI secretion system protein
	?	NC_002947	= 4561916	50 (0.810)					coding (1945/2316 nt)	vgrG‑III	type VI secretion system protein

CCACGCCCTGGCGCTGGGTGCCATCGGACAACGTTGC‑CACGTAGGCCGTGCCCGCAATCGGCGTACCGTCGGCATGCACCAGGCGAAACTCGATTTCGTCCTGCTCAGGTGCAGGCGGTACTCCGTAACGTGCAGGCGCCTTGACCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4561712‑4561859 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgAGCGATGGCCGCATCGAAATCGGTTGCCCCGAACCACTGCTGTTACACGCCATCGCCCA  <  NC_002947/4561916‑4561858                                                                                                                                                                                                                  CCACGCCCTGGCGCTGGGTGCCATCGGACAACGTTGCGCACGTAGGCCGTGCCCGCAATCGGCGTACCGTCGGCATGCACCAGGCGAAACTCGATTTCGTCCTGCTCAGGTGCAGGCGGTACTCCGTAACGTGCAGGCGCCTTGACCTG                                                             >  1:70523/1‑149                                                      CGCAATCGGCGTACCGTCGGCATGCACCAGGCGAAACTCGATTTCGTCCTGCTCAGGTGCAGGCGGTACTCCGTAACGTGCAGGCGCCTTGACCTGAGCGATGGCCGCATCGAAATCGGTTGCCCCGAACCACTGCTGTTACACGCCAT        >  1:303948/1‑149                                                         AATCGGCGTACCGTCGGCATACACCAGGCGAAACTCGATTTCGTCCTGCTCAGGTGCAGGCGGTACTCCGTAACGTGCAGGCGCCTTGACCTGAGCGATGGCCGCATCGAAATCGGTTGCCCCGAACCACTGCTGTTACACGCCATC       <  3:357820/147‑1                                                             GGCGTACCGTCGGCATGCACCAGGCGAAACTCGATTTCGTCCTGCTCAGGTGCAGGCGGTACTCCGTAACGTGCAGGCGCCTTGACCTGAGCGATGGCCGCATCGAAATCGGTTGCCCCGAACCACTGCTGTTACACGCCATCGCCCA  <  2:303948/148‑1                                                                                                                                                                                                                  CCACGCCCTGGCGCTGGGTGCCATCGGACAACGTTGC‑CACGTAGGCCGTGCCCGCAATCGGCGTACCGTCGGCATGCACCAGGCGAAACTCGATTTCGTCCTGCTCAGGTGCAGGCGGTACTCCGTAACGTGCAGGCGCCTTGACCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4561712‑4561859 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgAGCGATGGCCGCATCGAAATCGGTTGCCCCGAACCACTGCTGTTACACGCCATCGCCCA  <  NC_002947/4561916‑4561858

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.