New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4561859	46 (0.720)	3 (0.050)	3/260	NT	5.9%	coding (2002/2316 nt)	vgrG‑III	type VI secretion system protein
	?	NC_002947	= 4561916	50 (0.810)					coding (1945/2316 nt)	vgrG‑III	type VI secretion system protein

CCACGCCCTGGCGCTGGGTGCCATCGGACAACGTTGC‑CACGTAGGCCGTGCCCGCAATCGGCGTACCGTCGGCATGCACCAGGCGAAACTCGATTTCGTCCTGCTCAGGTGCAGGCGGTACTCCGTAACGTGCAGGCGCCTTGACCTGGGCGATGGCGTGTAACAGCAGTGGTTCGGGGCAACCGATTTCGATGCGGCCATCGCTCAGCTTGATAAAGGCCCCGCCGCAGCTCAGGGTCAGCGACGTTCGGCTGTCGATATGCACATGGCCGTGATGACTGGTGATCGACACAT  >  NC_002947/4561712‑4562005                                                                                                                                                     |                                                                                                                                                   ccACGCCCTGGCGCTGGGTGCCATCGGACAACGTTGCGCACGTAGGCCGTGCCCGCAATCGGCGTACCGTCGGCATGCACCAGGCGAAACTCGATTTCGTCCTGCTCAGGTGCAGGCGGTACTCCGTAACGTGCAGGCGCCTTGACCTG                                                                                                                                                    >  1:70523‑M1/1‑149 (MQ=255)  cACGCCCTGGCGCTGGGTGCCATCGGACAACGTTGC‑GACGTAGGCCGTGCCCGCAATCGGCGTACCGTCGGCATGCACCAGGCGAAACTCGATTTCGTCCTGCTCAGGTGCAGGCGGTACTCCGTAACGTGCAGGCGCCTTGACCTggg                                                                                                                                                  >  7:25519/1‑149 (MQ=255)  cACGCCCTGGCGCTGGGTGCCATCGGACAACGTTGC‑CACGTAGGCCGTGCCCGCAATCGGCGTACCGTCGGCATGCACCAGGCGAAACTCGATTTCGTCCTGCTCAGGTGCAGGCGGTACTCCGTAACGTGCAGGCGCCTTGACCTggg                                                                                                                                                  <  3:185524/149‑1 (MQ=255)  cACGCCCTGGCGCTGGGTGCCATCGGACAACGTTGC‑CACGTAGGCCGTGCCAGCAATCGGCGTACCGTCGGCATGCACCAGGCGAAACTCGATTTCGTCCTGCTCAGGTGCAGGCGGTACTCCGTAACGTGCAGGCGCCTTGACCTggg                                                                                                                                                  >  4:390238/1‑149 (MQ=255)   aCGCCCTGGCGCTGGGTGCCATCGGACAACGTTGC‑CACGTAGGCCGTGCCCGCAATCGGCGTACCGTCGGCATGCACCAGGCGAAACTCGATTTCGTCCTGCTCAGGTGCAGGCGGTACTCCGTAACGTGCAGGCGCCTTGACCTGGGc                                                                                                                                                 <  4:141889/149‑1 (MQ=255)     gCCCTGGCGCTGGGTGCCATCGGACAACGTTGC‑CACGTAGGCCGTGCCCGCAATCGGCGTACCGTCGGCATGCACCAGGCGAAACTCGATTTCGTCCTGCTCAGGTGCAGGCGGTACTCCGTAACGTGCAGGCGCCTTGACCTGGGCGa                                                                                                                                               <  1:370881/149‑1 (MQ=255)       ccTGGCGCTGGGTGCCATCGGACAACGTTGC‑CACGTAGGCCGTGCCCGCAATCGGCGTACCGTCGGCATGCACCAGGCGAAACTCGATTTCGTCCTGCTCAGGTGCAGGCGGTACTCCGTAACGTGCAGGCGCCTTGACCTGGGCGATg                                                                                                                                             >  8:275390/1‑149 (MQ=255)           gcgcTGGGTGCCATCGGACAACGTTGC‑CACGTAGGCCGTGCCCGCAATCGGCGTACCGTCGGCATGCACCAGGCGAAACTCGATTTCGTCCTGCTCAGGTGCAGGCGGTACTCCGTAACGTGCAGGCGCCTTGACCTGGGCGATGGc                                                                                                                                           <  3:390238/147‑1 (MQ=255)                    gCCATCGGACAACGTTGC‑CACGTAGGCCGTGCCCGCAATCGGCGTACCGTCGGCATGCACCAGGCGAAACTCGATTTCGTCCTGCTCAGGTGCAGGCGGTACTCCGTAACGTGCAGGCGCCTTGACCTGGGCGATGGCGTGTAAcag                                                                                                                                  >  1:355292/1‑147 (MQ=255)                     ccATCGGACAACGTTGC‑CACGTAGGCCGTGCCCGCAATCGGCGTACCGTCCGCATGCACCAGCCGAAACTCGATTTCGTCCTGCTCTGGTGCAGGCTGTACTCCGTAACGTTCAGGCGCCTTGACCTGGGCGTTGGCGTGTAAcagcag                                                                                                                               <  8:60340/149‑1 (MQ=255)                        tCGGACAACGTTGC‑CACGTAGGCCGTGCCCGCAATCGGCGTACCGTCGGCATGCACCAGGCGAAACTCGATTTAGTCCTGCTCAGGTGCAGGCGGTACTCCGTAACGTGCAGGCGCCTTGACCTGGGCGATGGCGTGTAACAGCAGTgg                                                                                                                            >  3:116997/1‑149 (MQ=255)                           gACAACGTTGC‑CACGTAGGCCGTGCCCGCAATCGGCGTACCGTCGGCATGCACCAGGCGAAACTCGATTTCGTCCTGCTCAGGTGCAGGCGGTACTCCGTAACGTGCAGGCGCCTTGACCTGGGCGATGGCGTGTAACAGCAGTGGTTc                                                                                                                         >  6:334698/1‑149 (MQ=255)                                   tGC‑CACGTAGGCCGTGCCCGCAATCGGCGTACCGTCGGCATGCACCAGGCGAAACTCGATTTCGTCCTGCTCAGGTGCAGGCGGTACTCCGTAACGTGCAGGCGCCTTGACCTGGGCGATGGCGTGTAACAGCAGTGGTTCGGGGCAAc                                                                                                                 >  1:169213/1‑149 (MQ=255)                                             ggCCGTGCCCGCAATCGGCGTACCGTCGGCATGCACCAGGCGAAACTCGATTTCGTCCTGCTCAGGTGCAGGCGGTACTCCGTAACGTGCAGGCGCCTTGACCTGGGCGATGGCGTGTAACAGCAGTGGTTCGGGGCAACCGATTTCGa                                                                                                        <  5:393943/149‑1 (MQ=255)                                                     ccGCAATCGGCGTACCGTCGGCATGCACCAGGCGAAACTCGATTTCGTCCTGCTCAGGTGCAGGCGGTACTCCGTAACGTGCAGGCGCCTTGACCTGGGCGATGGCGTGTAACAGCAGTGGTTCGGGGCAACCGATTTCGATGCGGCCa                                                                                                <  4:344790/149‑1 (MQ=255)                                                      cGCAATCGGCGTACCGTCGGCATGCACCAGGCGAAACTCGATTTCGTCCTGCTCAGGTGCAGGCGGTACTCCGTAACGTGCAGGCGCCTTGACCTGagcgatggccgcatcgaaatcggttgccccgaaccactgctgttacacgccat                                                                                               >  1:303948‑M1/1‑96 (MQ=255)                                                      cGCAATCGGCGTACCGTCGGCATGCACCAGGCGAAACTCGATTTCGTCCTGCTCAGGTGCAGGCGGTACTCCGTAACGTGCAGGCGCCTTGACCTGGGCGATGGCGTGTAACAGCAGTGGTTCGGGGCAACCGATTTCGATGCGGCCAt                                                                                               >  6:224821/1‑149 (MQ=255)                                                      cGCAATCGGCGTACCGTCGGCATGCACCAGGCGAAACTCGATTTCGTCCTGCTCAGGTGCAGGCGGTACTCCGTAACGTGCAGGCGCCTTGACCTGGGCGATGGCGTGTAACAGCAGTGGTTCGGGGCAACCGATTTCGATGCGGCCAt                                                                                               <  2:169213/149‑1 (MQ=255)                                                       gCAATCGGCGTACCGTCGGCATGCACCAGGCGAAACTCGATTTCGTCCTGCTCAGGTGCAGGCGGTACTCCGTAACGTGCAGGCGCCTTGACCTGGGCGATGGCGTGTAACAGCAGTGGTTCGGGGCAACCGATTTCGATGCGGCCATc                                                                                              >  2:105001/1‑149 (MQ=255)                                                         aaTCGGCGTACCGTCGGCATACACCAGGCGAAACTCGATTTCGTCCTGCTCAGGTGCAGGCGGTACTCCGTAACGTGCAGGCGCCTTGACCTGagcgatggccgcatcgaaatcggttgccccgaaccactgctgttacacgccatc                                                                                              <  3:357820‑M1/147‑55 (MQ=255)                                                             ggCGTACCGTCGGCATGCACCAGGCGAAACTCGATTTCGTCCTGCTCAGGTGCAGGCGGTACTCCGTAACGTGCAGGCGCCTTGACCTGagcgatggccgcatcgaaatcggttgccccgaaccactgctgttacacgccatcgccca                                                                                         <  2:303948‑M1/148‑60 (MQ=255)                                                              gCGTACCGTCGGCATGCACCAGGCGAAACTCGATTTCGTCCTGCTCAGGTGCAGGCGGTACTCCGTAACGTGCAGGCGCCTTGACCTGGGCGATGGCGTGTAACAGCAGTGGTTCGGGGCAACCGATTTCGATGCGGCCATCGCTCAGc                                                                                       >  3:323714/1‑149 (MQ=255)                                                                gTACCGTCGGCATGCACCAGGCGAAACTCGATTTCGTCCTGCTCAGGTGCAGGCGGTACTCCGTAACGTGCAGGCGCCTTGACCTGGGCGATGGCGTGTAACAGCAGTGGTTCGGGGCAACCGATTTCGATGCGGCCATCGCGCAGCtt                                                                                     >  4:349669/1‑149 (MQ=255)                                                                   ccGTCGGCATGCACCAGGCGAAACTCGATTTCGTCCTGCTCAGGTGCAGGCGGTACTCCGTAACGTGCAGGCGCCTTGACCTGGGCGATGGCGTGTAACAGCAGTGGTTCGGGGCAACCGATTTCGATGCGGCCATCGCTCAGCTTGa                                                                                   >  7:299716/1‑148 (MQ=255)                                                                   ccGTCGGCAAGCACCACGCGAAACTCGATTTCGTCCTGCTCAGCTGCAGGCGGTACTCCGTAACGTGCAGGCGCCTTGACCTGGGCGATGGCGTGTAACAGCAGTGGTTCGGGGCAACCGATTTCGATGCGGCCATCGCTCAGCTTGAt                                                                                  <  8:25519/149‑1 (MQ=255)                                                                    cGTCGGCATGCACCAGGCGAAACTCGATTTCGTCCTGCTCAGGTGCAGGCGGTACTCCGTAACGTGCAGGCGCCTTGACCTGGGCGATGGCGTGTAACAGCAGTGGTTCGGGGCAACCGATTTCGATGCGGCCATCGCTCAGCTTGAt                                                                                  >  3:14233/1‑148 (MQ=255)                                                                     gTCGGCATGCACCAGGCGAAACTCGATTTCGTCCTGCTCAGGTGCAGGCGGTACTCCGTAACGTGCAGGCGCCTTGACCTGGGCGATGGCGTGTAACAGCAGTGGTTCGGGGCAACCGATTTCGATGCGGCCATCGCTCAGCTTGATa                                                                                 >  8:347023/1‑148 (MQ=255)                                                                       cGGCATGCACCAGGCGAAACTCGATTTCGTCCTGCTCAGGTGCAGGCGGTACTCCGTAACGTGCAGGCGCCTTGACCTGGGCGATGGCGTGTAACAGCAGTGGTTCGGGGCAACCGATTTCGATGCGGCCATCGCTCAGCTTGATAAAg                                                                              >  4:245713/1‑149 (MQ=255)                                                                         gCATGCACCAGGCGAAACTCGATTTCGTCCTGCTCAGGTGCAGGCGGTACTCCGTAACGTGCAGGCGCCTTGACCTGGGCGATGGCGTGTAACAGCAGTGGTTCGGGGCAACCGATTTCGATGCGGCCATCGCTCAGCTTGATAAAGGc                                                                            >  7:81291/1‑149 (MQ=255)                                                                          cATGCACAAGGCGAAACTCGATTTAGTCCTGCTCAGGTGCAGGCGGTACTCCGTAACGTGCAGGCGCCTTGACCTGGGCGATGGCGTGTAACAGCAGTGGTTCGAGGCAAACGAATTCGATGCGGCCATCGCTCAGCTTGATAAAGGcc                                                                           >  4:294325/1‑149 (MQ=255)                                                                               aCCAGGCGAAACTCGATTTCGTCCTGCTCAGGTGCAGGCGGTACTCCGTAACGTGCAGGCGCCTTGACCTGGGCGATGGCGTGTAACAGCAGTGGTTCGGGGCAACCGATTTCGATGCGGCCATCGCTCAGCTTGATAAAGGCCccgcc                                                                      >  7:285407/1‑149 (MQ=255)                                                                                  aGGCGAAACTCGATTTCGTCCTGCTCAGGTGCAGGCGGTACTCCGTAACGTGCAGGCGCCTTGACCTGGGCGATGGCGTGTAACAGCAGTGGTTCGGGGCAACCGATTTCGATGCGGCCATCGCTCAGCTTGATAAAGGCCCCGCCGCa                                                                   <  4:116997/149‑1 (MQ=255)                                                                                  aGGCGAAACTCGATTTCGTCCTGCTCAGGTGCAGGCGGTACTCCGTAACGTGCAGGCGCCTTGACCTGGGCGATGGCGTGTAACAGCAGTGGTTCGGGGCAACCGATTTCGATGCGGCCATCGCTCAGCTTGATAAAGGCCCCGCCGCa                                                                   <  6:185283/149‑1 (MQ=255)                                                                                   ggCGAAACTCGATTTCGTCCTGCTCAGGTGCAGGCGGTACTCCGTAACGTGCAGGCGCCTTGACCTGGGCGATGGCGTGTAACAGCAGTGGTTCGGGGCAACCGATTTCGATGCGGCCATCGCTCAGCTTGATAAAGGCCCCGCCGCAg                                                                  >  2:144299/1‑149 (MQ=255)                                                                                    gCGAAACTCGATTTCGTCCTGCTCAGGTGCAGGCGGTACTCCGTAACGTGCAGGCGCCTTGACCTGGGCGATGGCGTGTAACAGCAGTGGTTCGGGGCAACCGATTTCGATGCGGCCATCGCTCAGCTTGATAAAGGCCCCGCCGCAGc                                                                 >  1:156460/1‑149 (MQ=255)                                                                                      gAAACTCGATTTCGTCCTGCTCAGGTGCAGGCGGTACTCCGTAACGTGCAGGCGCCTTGACCTGGGCGATGGCGTGTAACAGCAGTGGTTCGGGGCAACCGATTTCGATGCGGCCATCGCTCAGCTTGATAAAGGCCCCGCCGCAGCt                                                                >  2:162273/1‑148 (MQ=255)                                                                                        aaCTCGATTTCGTCCTGCTCAGGTGCAGGCGGTACTCCGTAACGTGCAGGCGCCTTGACCTGGGCGATGGCGTGTAACAGCAGTGGTTCGGGGCAACCGATTTCGATGCGGCCATCGCTCAGCTTGATAAAGGCCCCGCCGCAGCTCAg                                                             >  5:116090/1‑149 (MQ=255)                                                                                         aCTCGATTTCGTCCTGCTCAGGTGCAGGCGGTACTCCGTAACGTGCAGGCGCCTTGACCTGGGCGATGGCGTGTAACAGCAGTGGTTCGGGGCAACCGATTTCGATGCGGCCATCGCTCAGCTTGATAAAGGCCCCGCCGCAGCTCAgg                                                            <  3:245713/149‑1 (MQ=255)                                                                                         aCTCGATTTCGTCCTGCTCAGGTGCAGGCGGTACTCCGTAACGTGCAGGCGCCTTGACCTGGGCGATGGCGTGTAACAGCAGTGGTTCGGGGCAACCGATTTCGATGCGGCCATCGCTCAGCTTGATAAAGGCCCCGCCGCAGCTCAgg                                                            <  2:70523/149‑1 (MQ=255)                                                                                         aCTCGATTTCGTCCTGCTCAGGTGCAGGCGGTACTCCGTAACGTGCAGGCGCCTTGACCTGGGCGATGGCGTGTAACAGCAGTGGTTCGGGGCAACCGATTTCGATGCGGCCATCGCTCAGCTTGATAAAGGCCCCGCCGCAGCTCAgg                                                            <  7:275390/149‑1 (MQ=255)                                                                                             gATTTCGTCCTGCTCAGGTGCAGGCGGTACTCCGTAACGTGCAGGCGCCTTGACCTGGGCGATGGCGTGTAACAGCAGTGGTTCGGGGCAACCGATTTCGATGCGGCCATCGCTCAGCTTGATAAAGGCCCCGCCGCAGCTCAGGGTCa                                                        <  1:105001/149‑1 (MQ=255)                                                                                                   gTCCTGCTCAGGTGCAGGCGGTACTCCGTAACGTGCAGGCGCCTTGACCTGGGCGATGGCGTGTAACAGCAGTGGTTCGGGGCAACCGATTTCGATGCGGCCATCGCTCAGCTTGATAAAGGCCCCGCCGCAGCTCAGGGTCAGCGAc                                                   <  2:355292/148‑1 (MQ=255)                                                                                                    tCCTGCTCAGGTGCAGGCGGTACTCCGTAACGTGCAGGCGCCTTGACCTGGGCGATGGCGTGTAACAGCAGTGGTTCGGGGCAACCGATTTCGATGCGGCCATCGCTCAGCTTGATAAAGGCCCCGCCGCAGCTCAGGGTCAGCGACGt                                                 >  3:151700/1‑149 (MQ=255)                                                                                                      cTGCTCAGGTGCAGGCGGTACTCCGTAACGTGCAGGCGCCTTGACCTGGGCGAAGGCGTGTAACAGCAGTGGTTCGGGGCAACCGATTTCGATGCGGCCATCGCTCAGCTTGATAAAGGCCCCGCCGCAGCTCAGGGTCAGCGACGTTc                                               <  1:320917/149‑1 (MQ=255)                                                                                                          tCAGGTGCAGGCGGTACTCCGTAACGTGCAGGCGCCTTGACCTGGGCGATGGCGTGTAACAGCAGTGGTTCGGGGCAACCGATTTCGATGCGGCCATCGCTCAGCTTGAt                                                                                  >  5:40323/1‑110 (MQ=255)                                                                                                          tCAGGTGCAGGCGGTACTCCGTAACGTGCAGGCGCCTTGACCTGGGCGATGGCGTGTAACAGCAGTGGTTCGGGGCAACCGATTTCGATGCGGCCATCGCTCAGCTTGAt                                                                                  <  6:40323/110‑1 (MQ=255)                                                                                                             ggTGCAGGCGGTACTCCGTAACGTGCAGGCGCCTTGACCTGGGCGATGGCGTGTAACAGCAGTGGTTCGGGGCAACCGATTTCGATGCGGCCATCGCTCAGCTTGATAAAGGCCCCGCCGCAGCTCAGGGTCAGCGACATTCGGCTGTc                                        <  6:116090/149‑1 (MQ=255)                                                                                                                    gCGGTACTCCGTAACGTGCAGGCGCCTTGACCTGGGCGATGGCGTGTAACAGCAGTGGTTCGGGGCAACCGATTTCGATGCGGCCATCGCTCAGCTTGATAAAGGCCCCGCCGCAGCTCAGGGTCAGCGACGTTCGGCTGTCGATATg                                  >  5:364537/1‑148 (MQ=255)                                                                                                                                     gCAGGCGCCTTGACCTGGGCGATGGCGTGTAACAGCAGTGGTTCGGGGCAACCGATTTCGATGCGGCCATCGCTCAGCTTGATAAAGGCCCCGCCGCAGCTCAGGGTCAGCGACGTTCGGCTGTCGATATGCACATGGCCGTGATGACt                <  8:299716/149‑1 (MQ=255)                                                                                                                                      cAGGCGCCTTGACCTGGGCGATGGCGTGTAACAGCAGTGGTTCGGGGCAACCGATTTCGATGCGGCCATCGCTCAGCTTGATAAAGGCCCCGCCGCAGCTCAGGGTCAGCGACGTTCGGCTGTCGATATGCACATGGCCGTGATGACTg               <  1:144299/149‑1 (MQ=255)                                                                                                                                       aGGCGCCTTGACCTGGGCGATGGCGTGTAACAGCAGTGGTTCGGGGCAACCGATTTCGATGCGGCCATCGCTCAGCTTGATAAAGGCCCCGCCGCAGCTCAGGGTCAGCGACGTTCGGCTGTCGATATGCACATGGCCGTGATGACTgg              <  3:294325/149‑1 (MQ=255)                                                                                                                                           gcCTTGACCTGGGCGATGGCGTGTAACAGCAGTGGTTCGGGGCAACCGATTTCGATGCGGCCATCGCTCAGCTTGATAAAGGCCCCGCCGCAGCTCAGGGTCAGCGACGTTCGGCTGTCGATATGCACATGGCCGTGATGACTGGTGAt          >  1:249817/1‑149 (MQ=255)                                                                                                                                            ccTTGACCTGGGCGATGGCGTGTAACAGCAGTGGTTCGGGGCAACCGATTTCGATGCGGCCATCGCTCAGCTTGATAAAGGCCCCGCCGCAGCTCAGGGTCAGCGACGTTCGGCTGTCGATATGCACATGGCCGTGATGACTGGTGATc         <  8:81291/149‑1 (MQ=255)                                                                                                                                              ttGACCTGGGCGATGGCGTGTAACAGCAGTGGTTCGGGGCAACCGATTTCGATGCGGCCATCGCTCAGCTTGATAAAGGCCCCGCCGCAGCTCAGGGTCAGCGACGTTCGGCTGTCGATATGCACATGGCCGTGATGACTGGTGATCGa       >  4:67215/1‑149 (MQ=255)                                                                                                                                                gACCTGGGCGATGGCGTGTAACAGCAGTGGTTCGGGGCAACCGATTTCGATGCGGCCATCGCTCAGCTTGATAAAGGCCCCGCCGCAGCTCAGGGTCAGCGACGTTCGGCTGTCGATATGCACATGGCCGTGATGACTGGTGATCGac      <  5:224821/148‑1 (MQ=255)                                                                                                                                                    tGGGCGATGGCGTGTAACAGCAGTGGTTCGGGGCAACCGATTTCGATGCGGCCATCGCTcaggtcaaggcgcctgcacgttacggagtaccgcctgcacctgagcaggacgaaatcgagtttcgcctggtgcatgccgacggtacgcc  <  2:303948‑M2/148‑90 (MQ=255)                                                                                                                                                     |                                                                                                                                                   CCACGCCCTGGCGCTGGGTGCCATCGGACAACGTTGC‑CACGTAGGCCGTGCCCGCAATCGGCGTACCGTCGGCATGCACCAGGCGAAACTCGATTTCGTCCTGCTCAGGTGCAGGCGGTACTCCGTAACGTGCAGGCGCCTTGACCTGGGCGATGGCGTGTAACAGCAGTGGTTCGGGGCAACCGATTTCGATGCGGCCATCGCTCAGCTTGATAAAGGCCCCGCCGCAGCTCAGGGTCAGCGACGTTCGGCTGTCGATATGCACATGGCCGTGATGACTGGTGATCGACACAT  >  NC_002947/4561712‑4562005

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.