New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4945457	41 (0.650)	3 (0.050)	3/248	NT	6.7%	coding (1124/1143 nt)	flhB	flagellin export apparatus substrate specificity protein
	?	NC_002947	= 4945546	46 (0.780)					coding (1035/1143 nt)	flhB	flagellin export apparatus substrate specificity protein

CACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4945407‑4945457 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgcaggtGCTGGCGTATGTGTTCCAGATTCGCCAATACCGCGCCGGCAAGGGCAAGCGCCCAGAGCCACTGAAGGACGACCTGCCGATCCCGCCGGACCTGCGCCGCGACAGTTGATCTGTTCGGCGATAGGTTTGCGTTGCCTGTGA  <  NC_002947/4945546‑4945406                                                                                                                                                                                                  CACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTGCTGGCGTATGTGTTCCAGATTCGCCAATACCGCGCCGGCAAGGGCAAGCGCCCAGAGCCACTGAAGGACGACCTGCCGATCCCGCCGGACCTGCGC                                              <  8:249005/148‑1 CACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTGCTGGCGTATGTCTTCCAGATTCGCCAATACCGCGCCGGCAAGGGCAAGCGCCCAGAGCCACTGAAGGACGACCTGCCGATCCCGCCGGACCTGCGC                                              >  7:249005/1‑148  ACAGGCAACGCAAACCTATCGCCGAACATATCAACTGTCGCGGCGCAGGTGCTGGCGTATGTGTTCCAGATTCGCCAATACCGCGCCGGCAAGGGCAAGCGCCCAGAGCCACTGAAGGACGACCTGCCGATCCCGCCGGACCTGCGCC                                             <  1:361089/148‑1                                            GCGCAGGTGCTGGCGTATGTGTTCCAGATTCGCCAATACCGCGCCGGCAAGGGCAAGCGCCCAGAGCCACTGAAGGACGACCTGCCGATCCCGCCGGACCTGCGCCGCGACAGTTGATCTGTTCGGCGATAGGTTTGCGTTGCCTGTGA  <  2:311278/149‑1                                            GCGCAGGTGCTGGCGTATGTGTTCCAGATTCGCCAATACCGCGCCGGCAAGGGCAAGCGCCCAGAGCCACTGAAGGACGACCTGCCGATCCCGCCGGACCTGCGCCGCGACAGTTGATCTGTTCGGCGATAGGTTTGCGTTGCCTGTGA  <  6:324013/149‑1                                            GCGCAGGTGCTGGCGTATGTGTTCCAGATTCGCCAATACCGCGCCGGCAAGGGCAAGCGCCCAGAGCCACTGAAGGACGACCTGCCGATCCCGCCGGACCTGCGCCGCGACAGTTGATCTGTTCGGCGATAGGTTTGCGTTGCCTGTG   <  2:284656/148‑1                                            GCGCAGGTGCTGGCGTATGTGTTCCAGATTCGCCAATACCGCGCCGGCAAGGGCAAGCGCCCAGAGCCACTGAAGGACGACCTGCCGATCCCGCCGGACCTGCGCCGCGACAGTTGATCTGTTCGGCGATAGGTTTGCGTTGCCTGT    >  5:324013/1‑147                                              GCAGGTGCTGGCGTATGTGTTCCAGATTCGCCAATACCGCGCCGGCAAGGGCAAGCGCCCAGAGCCACTGAAGGACGACCTGCCGATCCCGCCGGACCTGCGCCGCGACAGTTGATCTGTTCGGCGATTGGTTTGCGTTGCCTGT    >  6:250141/1‑145                                                                                                                                                                                                  CACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4945407‑4945457 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgcaggtGCTGGCGTATGTGTTCCAGATTCGCCAATACCGCGCCGGCAAGGGCAAGCGCCCAGAGCCACTGAAGGACGACCTGCCGATCCCGCCGGACCTGCGCCGCGACAGTTGATCTGTTCGGCGATAGGTTTGCGTTGCCTGTGA  <  NC_002947/4945546‑4945406

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.