New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4945457	41 (0.650)	3 (0.050)	3/248	NT	6.7%	coding (1124/1143 nt)	flhB	flagellin export apparatus substrate specificity protein
	?	NC_002947	= 4945546	46 (0.780)					coding (1035/1143 nt)	flhB	flagellin export apparatus substrate specificity protein

CAAGGCGGTCGCGCGCGCCGGGCACAGGAGGGACTGGCCCGAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGCTTGCCCTTGCCGGCGCGGTATTGGCGAATCTGGAACACATACGCCAGCACCTGCGCCACCGCCAGGTACAGCCCCGCCGGGATCTCCTGCTCAAGTTCGGTGGA  >  NC_002947/4945310‑4945602                                                                                                                                                    |                                                                                                                                                  caaGGCGGTCGCGCGCGCCGGGCACAGGAGGGACTGGCCCGAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTc                                                                                                                                                  >  5:114849/1‑149 (MQ=255) caaGGCGGTCGCGCGCGCCGGGCACAGGAGGGACTGGCCCGAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTc                                                                                                                                                  <  5:235330/149‑1 (MQ=255)    ggCGGTCGCGCGCGCCGGGCACAGGAGGGACTGGCCCGAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCcgg                                                                                                                                               >  6:327098/1‑149 (MQ=255)     gCGGTCGCGCGCGCCGGGCACAGGAGGGACTGGCCCGAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCcggc                                                                                                                                              <  5:116652/149‑1 (MQ=255)       ggTCGCGCGCGCCGGGCACAGGAGGGACTGGCCCGAAACAAATGTAGGAGCGAGCTTGGTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCcggcgg                                                                                                                                            >  3:358837/1‑149 (MQ=255)         tCGCGCGCGCCGGGCACAGGAGGGACTGGCCCGAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGa                                                                                                                                          >  3:81592/1‑149 (MQ=255)             gcgcgcCGGGCACAGGAGGGACTGGCCCGAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCgg                                                                                                                                      >  2:297632/1‑149 (MQ=255)                cgcCGGGCACAGGAGGGACTGGCCCGAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAg                                                                                                                                   <  5:327098/149‑1 (MQ=255)                cgcCGGGCACAGGAGGGACTGGCCCGAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAg                                                                                                                                   <  5:182592/149‑1 (MQ=255)                   cGGGCACAGGAGGGACTGGCCCGAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGgtc                                                                                                                                >  7:316024/1‑149 (MQ=255)                     ggCACAGGAGGGACTGGCCCGAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGgtcgt                                                                                                                              >  8:52974/1‑149 (MQ=255)                      gCACAGGAGGGACTGGCCCGAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGgtcgtc                                                                                                                             <  6:222526/149‑1 (MQ=255)                              gggACTGGCCCGAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTg                                                                                                                     <  3:291854/149‑1 (MQ=255)                                   tGGCCCGAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGctct                                                                                                                >  6:65684/1‑149 (MQ=255)                                     gCCCGAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGATCAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTgg                                                                                                              >  4:122558/1‑149 (MQ=255)                                     gCCCGAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGctct                                                                                                                <  6:114849/147‑1 (MQ=255)                                                     ggAGCGAGCTTGGTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGCTTGCCCTTGCCg                                                                                              <  4:358837/149‑1 (MQ=255)                                                            gcTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACGTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGCTTGCCCTTGCCGGCGCGGt                                                                                       >  5:108536/1‑149 (MQ=255)                                                                  tCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGTGATCGGCAGgtc                                                                                                                                <  2:66602/102‑1 (MQ=255)                                                                  tCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGgtc                                                                                                                                >  1:66602/1‑102 (MQ=255)                                                                  tCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGCTTGCCCTTGCCGGCGCGGTATTGGc                                                                                 >  7:68286/1‑149 (MQ=255)                                                                  tCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCAATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGCTTGCCCTTGCCGGCGCGGTATTGGc                                                                                 >  5:250141/1‑149 (MQ=255)                                                                    gcgATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGCTTGCCCTTGCCGGCGCGGTATTGGc                                                                                 <  1:297632/147‑1 (MQ=255)                                                                    gcgATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGCTTGCCCTTGCCGGCGCGGTATTGGCg                                                                                >  3:160654/1‑148 (MQ=255)                                                                            ccgcGCGGGCTGCGCTAGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCACTTGCCCTTGCCGGCGCGGTATTGGCGAATCTGGaa                                                                       <  2:24919/149‑1 (MQ=255)                                                                             cgcgcgGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGCTTGCCCTTGCCGGCGCGGTATTAGCGAATCTGGaa                                                                       >  3:221986/1‑148 (MQ=255)                                                                              gcgcgGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGCTTGCCCTTGCCGGCGCGGTATTGGCGAATCTGGAaca                                                                     >  8:96848/1‑149 (MQ=255)                                                                                       gcgcTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGCTTGCCCTTGCCGGCGCGGTATTGGTGAATCTGGAACACATACGCCa                                                            <  5:65684/149‑1 (MQ=255)                                                                                        cgcTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGCTTGCCCTTGCCGGCGCGGTATTGGCGAATCTGGAACACATACGCCAg                                                           <  4:81592/149‑1 (MQ=255)                                                                                        cgcTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGCTTGCCCTTGCCGGCGCGGTATTGGCGAATCTGGAACACATACGCCAg                                                           <  7:52974/149‑1 (MQ=255)                                                                                                 tcACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGCTTGCCCTTGCCGGCGCGGTATTGGCGAATCTGGAACACATACGCCAGCacctgcgc                                                  <  2:311278‑M2/149‑9 (MQ=255)                                                                                                 tcACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGCTTGCCCTTGCCGGCGCGGTATTGGCGAATCTGGAACACATACGCCAGCacctgcgc                                                  <  6:324013‑M2/149‑9 (MQ=255)                                                                                                  cacaGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTgctggcgtatgtgttccagattcgccaataccgcgccggcaagggcaagcgcccagagccactgaaggacgacctgccgatcccgccggacctgcgc                                                  <  8:249005‑M1/148‑98 (MQ=255)                                                                                                  cacaGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTgctggcgtatgtcttccagattcgccaataccgcgccggcaagggcaagcgcccagagccactgaaggacgacctgccgatcccgccggacctgcgc                                                  >  7:249005‑M1/1‑51 (MQ=255)                                                                                                  cacaGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGCTTGCCCTTGCCGGCGCGGTATTGGCGAATCTGGAACACATACGCCAGCacctgcgc                                                  <  2:284656‑M2/148‑9 (MQ=255)                                                                                                   acaGGCAACGCAAACCTATCGCCGAACATATCAACTGTCGCGGCGCAGGTgctggcgtatgtgttccagattcgccaataccgcgccggcaagggcaagcgcccagagccactgaaggacgacctgccgatcccgccggacctgcgcc                                                 <  1:361089‑M1/148‑99 (MQ=255)                                                                                                   acaGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGCTTGCCCTTGCCGGCGCGGTATTGGCGAATCTGGAACACATACGCCAGCacctgcgc                                                  >  5:324013‑M2/1‑139 (MQ=255)                                                                                                   acaGGCAACGCAAACCAATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGCTTGCCCTTGCCGGCGCGGTATTGGCGAATCTGGAACACATACGCCAGCacctgc                                                    >  6:250141‑M2/1‑139 (MQ=255)                                                                                                     aGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGCTTGCCCTTGCCGGCGCGGTATTGGCGAATCTGGAACACATACGCCAGCACCTGCGCCAcc                                              >  1:216704/1‑149 (MQ=255)                                                                                                              aaaCCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGCTTGCCCTTGCCGGCGCGGTATTGGCGAATCTGGAACACATACGCCAGCACCTGCGCCACCGCCAGGTa                                      >  5:114259/1‑148 (MQ=255)                                                                                                                  cTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGCTTGCCCTTGCCGGCGCGGTATTGGCGAATCTGGAACACATACGCCAGCACCTGCGCCACCGCCAGGTACAGcc                                 <  1:311278/149‑1 (MQ=255)                                                                                                                         cGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGCTTGCCCTTGCCGGCGCGGTATTGGCGAATCTGGAACACATACGCCAGCACCTGCGCCACCGCCAGGTACAGCCCCGCCgg                          <  3:122558/149‑1 (MQ=255)                                                                                                                          gAACAGATCCACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGCTCGTCCTTCAGTGGCTCTGGGCGCTTGCCCTTGCCGGCGCGGTATTGGCGAATCTGGAACACATACGCCAGCACCTGCGCCACCGCCAGGTACAGCCCCGCCggg                         <  4:104452/149‑1 (MQ=255)                                                                                                                          gAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGCTTGCCCTTGCCGGCGCGGTATTGGCGAATCTGGAACACATACGCCAGCACCTGCGCCACCGCCAGGTACAGCCCCGCCgg                          >  2:273786/1‑148 (MQ=255)                                                                                                                           aaCAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGCTTGCCCTTGCCGGCGCGGTATTGGCGAATCTGGAACACATACGCCAGCACCTGCGCCACCGCCAGGTACAGCCCCGCCGGGa                        <  7:96848/149‑1 (MQ=255)                                                                                                                                aTCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGCTTGCCCTTGCCGGCGCGGTATTGGCGAATCTGGAACACATACGCCAGCACCTGCGCCACCGCCAGGTACAGCCCCGCCGGGATCTcc                   >  6:50529/1‑149 (MQ=255)                                                                                                                                 tCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGCTTGCCCTTGCCGGCGCGGTATTGGCGAATCTGGAACACATACGCCAGCACCTGCGCCACCGCCAGGTACAGCCCCGCCGGGATCTCCt                  <  8:316024/149‑1 (MQ=255)                                                                                                                                 tCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGCTTGCCCTTGCCGGCGCGGTATTGGCGAATCTGGAACACATACGCCAGCACCTGCGCCACCGCCAGGTACAGCCCCGCCGGGATCTCCt                  >  3:376574/1‑149 (MQ=255)                                                                                                                                        tCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGCTTGCCCTTGCCGGCGCGGTATTGGCGAATCTGGAACACATACGCCAGCACCTGCGCCCCCGCCAGTTACAGCCCCGCCGGGATCTCCTGCGCAAg           >  8:340039/1‑149 (MQ=255)                                                                                                                                            ggcgCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGCTTGCCCTTGCCGGCGCGGTATTGGCGAATCTGGAACACATACGCCAGCacctgcgccgcgacagttgatatgttcggcgataggtttgcgttgcctgt        <  1:361089‑M2/148‑51 (MQ=255)                                                                                                                                             gcgcAGGTgctggcgtatgtgttccagattcgccaataccgcgccggcaagggcaagcgcccagagccactgaaggacgacctgccgatcccgccggacctgcgccgcgacagttgatctgttcggcgataggtttgcgttgcctgtga      <  2:311278‑M1/149‑142 (MQ=255)                                                                                                                                             gcgcAGGTgctggcgtatgtgttccagattcgccaataccgcgccggcaagggcaagcgcccagagccactgaaggacgacctgccgatcccgccggacctgcgccgcgacagttgatctgttcggcgataggtttgcgttgcctgtga      <  6:324013‑M1/149‑142 (MQ=255)                                                                                                                                             gcgcAGGTgctggcgtatgtgttccagattcgccaataccgcgccggcaagggcaagcgcccagagccactgaaggacgacctgccgatcccgccggacctgcgccgcgacagttgatctgttcggcgataggtttgcgttgcctgtg       <  2:284656‑M1/148‑141 (MQ=255)                                                                                                                                             gcgcAGGTgctggcgtatgtgttccagattcgccaataccgcgccggcaagggcaagcgcccagagccactgaaggacgacctgccgatcccgccggacctgcgccgcgacagttgatctgttcggcgataggtttgcgttgcctgt        >  5:324013‑M1/1‑8 (MQ=255)                                                                                                                                             gcgcAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGCTTGCCCTTGCCGGCGCGGTATTGGCGAATCTGGAAGACATACGCCAGCacctgcgccgcgacagttgatctgttcggcgataggtttgcgttgcctgtg       >  7:249005‑M2/1‑97 (MQ=255)                                                                                                                                             gcgcAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGCTTGCCCTTGCCGGCGCGGTATTGGCGAATCTGGAACACATACGCCAGCacctgcgccgcgacagttgatctgttcggcgataggtttgcgttgcctgtg       <  8:249005‑M2/148‑52 (MQ=255)                                                                                                                                             gcgcAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGCTTGCCCTTGCCGGCGCGGTATTGGCGAATCTGGAACACATACGCCAGCACCTGCGCCACCGCCAGGTACAGCCCCGCCGGGATCTCCTGCTCAAGTTCgg      >  3:18227/1‑149 (MQ=255)                                                                                                                                              cgcAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGCTTGCCCTTGCCGGCGCGGTATTGGCGAATCTGGAACACATACGCCAGCACCTGCGCCACCGCCAGGTACAGCCCCGCCGGGATCTCCTGCTCAAGTTCGGt     >  6:93897/1‑149 (MQ=255)                                                                                                                                              cgcAGGTCCGGCGCGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGCTTGCCCTTGCCGGCGCGCTATTGGCGAATCTGGAACAAATAACCCAGCACCTGCGCCACCGCCACGTACAACCCAGCCGGGATCTCCTGATAAAGttaca      >  8:260599/1‑145 (MQ=255)                                                                                                                                               gcAGGTgctggcgtatgtgttccagattcgccaataccgcgccggcaagggcaagcgcccagagccactgaaggacgacctgccgatcccgccggacctgcgccgcgacagttgatctgttcggcgattggtttgcgttgcctgt        >  6:250141‑M1/1‑6 (MQ=255)                                                                                                                                               gcAGGTCCGTCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGCTTGCCCTTGCCGGCGCGGTATTGGCGAATCTGGAACACATACGCCAGCACCTGCGCCACCGCCAGGTACAGCCCCGCCGGGATCTCCTGCTCAAGTTCGGTg    <  6:114259/149‑1 (MQ=255)                                                                                                                                                 aGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGCTTGCCCTTGCCGGCGCGGTATTGGCGAATCTGGAACACATACGCCAGCACCTGCGCCACCGCCAGGTACAGCCCCGCCGGGATCTCCTGCTCAAGTTCGGTGGa  <  4:18227/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                  CAAGGCGGTCGCGCGCGCCGGGCACAGGAGGGACTGGCCCGAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGCTTGCCCTTGCCGGCGCGGTATTGGCGAATCTGGAACACATACGCCAGCACCTGCGCCACCGCCAGGTACAGCCCCGCCGGGATCTCCTGCTCAAGTTCGGTGGA  >  NC_002947/4945310‑4945602

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.