New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4960320 =	73 (1.150)	5 (0.080)	4/260	NT	6.8%	coding (151/1779 nt)	fliF	flagellar M‑ring protein
	?	NC_002947	4960368 =	66 (1.060)					coding (103/1779 nt)	fliF	flagellar M‑ring protein

ATGGCTGAAGCAGTCGTCGAAAACGCCCCCGCCAAAGCTGGCTCGCCAGCGGCCAAGCCGCCGCTGTTTGGCATGGCGTTTCTGGAAAACATCTCGCAGATGCCCATGCTGCGCCAGATCGGCCTCCTGGTCGGCCTGGCGGCCAGCGTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4960470‑4960320 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggGCATCTGCGAGATGTTTTCCAGAAACGCCATGCCAAACAGCGGCGGCTTGGCCGCTGGCGAGCCAGCTTTGGCGGGGGCGTTTTCGACGACTGCTTCAGCCATGGGTTACA  >  NC_002947/4960368‑4960478                                                                                                                                                                                                                                                                        ATGGCTGAAGCAGTCGTCGAAAACGCCCCCGCCAAAGCTGGCTCGCCAGCGGCCAAGCCGCCGCTGTTTGGCATGGCGTTTCTGGAAAACATCTCGCAGATGCCCATGCTGCGCCAGATCGGCCTCCTGGTCGGCCTGGCGGCCAGCGT                                                                                                                   <  1:84851/149‑1                                                                                           ATCTCGCAGATGCCCATGCTGCGCCAGATCGGCCTCCTGGTCGGCCTGGCGGCCAGCGTGGGCATCTGCGAGATGTTTTCCAGAAACGCCATGCCAAACAGCGGCGGCTTGGCCGCTGGCGAGCCAGCTTTGGCGGGGGCGTTTTCGAC                         >  2:375983/1‑149                                                                                                GCAGATGCCCATGCTGCGCCAGATCGGCCTCCTGGTCGGCCTGGCGGCCAGCGTGGGCATCTGCGAGATGTTTTCCAGAAACGCCATGCCAAACAGCGGCGGCTTGGCCGCTGGCGAGCCAGCTTTGGCGGGGGCGTTTTCGACGAC                      <  1:375983/147‑1                                                                                                        CCATGCTGCGCCAGATCGGCCTCCTGGTCGGCCTGGCGGCCAGCGTGGGCATCTGCGAGATGTTTTCCAGAAACGCCATGCCAAACAGCGGCGGCTTGGCCGCTGGCGAGCCAGCTTTGGCGGGGGCGTTTTCGACGACTGCTTCAGC             >  3:81629/1‑148                                                                                                        CCATGCTGCGCCAGATCGGCCTCCTGGTCGGCCTGGCGGCCAGCGTGGGCATCTGCGAGATGTTTTCCAGAAACGCCATGCCAAACAGCGGCGGCTTGGCCGCTGGCGAGCCAGCTTTGGCGGGGGCGTTTTCGACGACTGCTTCAGC             >  7:315235/1‑148                                                                                                                  CCAGATCGGCCTCCTGGTCGGCCTGGCGGCCAGCGTGGGCATCTGCGAGATGTTTTCCAGAAACGCCATGCCAAACAGCGGCGGCTTGGCCGCTGGCGAGCCAGCTTTGGCGGGGGCGTTTTCGACGACTGCTTCAGCCATGGGTTACA  <  8:315235/149‑1                                                                                                                                                                                                                                                                        ATGGCTGAAGCAGTCGTCGAAAACGCCCCCGCCAAAGCTGGCTCGCCAGCGGCCAAGCCGCCGCTGTTTGGCATGGCGTTTCTGGAAAACATCTCGCAGATGCCCATGCTGCGCCAGATCGGCCTCCTGGTCGGCCTGGCGGCCAGCGTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4960470‑4960320 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggGCATCTGCGAGATGTTTTCCAGAAACGCCATGCCAAACAGCGGCGGCTTGGCCGCTGGCGAGCCAGCTTTGGCGGGGGCGTTTTCGACGACTGCTTCAGCCATGGGTTACA  >  NC_002947/4960368‑4960478

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.