New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4979191 =	51 (0.800)	3 (0.050)	3/250	NT	5.4%	coding (231/786 nt)	flgG	flagellar basal‑body rod protein FlgG
	?	NC_002947	4979266 =	58 (0.970)					coding (156/786 nt)	flgG	flagellar basal‑body rod protein FlgG

TGGCCAACGTCTCGACCACCGGCTTCAAGCGTGATCGCGCCGAATTCGCAGACCTG‑CTCTACCAGATCAAGCGCCAGCCTGGTGCCCAGTCGACCCAGGACAGCGAGCTGCCCTCGGGCCTGCAGGTCGGTACCGGTGTGCGTATCGTGGGCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4979345‑4979191 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgggcaccAGGCTGGCGCTTGATCTGGTAGAGCAGGTCTGCGAATTCGGCGCGATCACGCTTGAAGCCGGTGGTCGAGACGTTGGCCAGGTTGTTGGAAATGACCGTCAGGTTGGTGTCCTGAGCGGACAGGCCGGTTTTAGCGACCCAAAGAGCC  >  NC_002947/4979266‑4979413                                                                                                                                                                                                                                                                                                                  TGGCCAACGTCTCGACCACCGGCTTCAAGCGTGATCGCGCCGAATTCGCAGACCTG‑CTCTACCAGATCAAGCGCCAGCCTGGTGCCCAGTCGACCCAGGACAGCGAGCTGCCCTCGGGCCTGCAGGTCGGTACCGGTGTGCGTATCGTG                                                                                                                                                            >  1:341872/1‑149   GCCAACGTCTCGACCACCGGCTTCAAGCGTGATCGCGCCGAATTCGCAGACCTG‑CTCTACCAGATCAAGCGCCAGCCTGGTGCCCAGTCGACCCAGGACAGCGAGCTGCCCTCGGGCCTGCAGGTCGGTACCGGTGTGCGTATCGTG                                                                                                                                                            <  7:241771/147‑1     CAACGTCTCGACCACCGGCTTCAAGCGTGATCGCGCCGAATTCGCAGACCTG‑CTCTACCAGATCAAGCGCCAGCCTGGTGCCCAGTCGACCCAGGACAGCGAGCTGCCCTCGGGCCTGCAGGTCGGTACCGGTGTGCGTATCGTGGGCA                                                                                                                                                        >  3:234175/1‑149      AACGTCTCGACCACCTGCTTCAAGCGTGATCGCGCCGAATTCGCAGACCTG‑CTCTACCAGCTCAAGCGCCAGCCTGGTGCCCAGTCGACCCAGGACAGCGAGCTGCCCTCGGGCCTGCAGGTCGGTACCCGTGTGCGTATCGTGGGCAC                                                                                                                                                       >  4:108228/1‑149           CTCGACCACCGGCTTCAAGCGTGATCGCGCCGAATTCGCAGACCTGACTCTACCAGATCAAGCGCCAGCCTGGTGCCCAGTCGACCCAGGACAGCGAGCTGCCCTCGGGCCTGCAGGTCGGTACCGGTGTGCGTATCGTGGGCACC                                                                                                                                                      >  1:283956/1‑146                                                                    TCAAGCGCCAGCCTGGTGCCCAGTCGACCCAGGACAGCGAGCTGCCCTCGGGCCTGCAGGTCGGTACCGGTGTGCGTATCGTGGGCACCAGGCTGGCGCTTGATCTGGTAGAGCAGGTCTGCGAATTCGGCGCGATCACGCTTGAAGCC                                                                                          >  6:324101/1‑149                                                                               CCTGGTGCCCAGTCGACCCAGGACAGCGAGCTGCCCTCGGGCCTGCAGGTCGGTACCGGTGTGCGTATCGTGGGCACCAGGCTGGCGCTTGATCTGGTAGAGCAGGTCTGCGAATTCGGCGCGATCACGCTTGAAGCCGGTGGTCGAGA                                                                               >  1:44903/1‑149                                                                                                   GGACAGCGAGCTGCCCTCGGGCCTGCAGGTCGGTACCGGTGTGCGTATCGTGGGCACCAGGCTGGCGCTTGATCTGGTAGAGCAGGTCTGCGAATTCGGCGCGATCACGCTTGAAGCCGGTGGTCGAGACGTTGGCCAGGTTGTTGGAA                                                           <  5:324101/149‑1                                                                                                                                                     TGGGCACCAGGCTGGCGCTTGATCTGGTAGAGCAGGTCTGCGAATTCGGCGCGATCACGCTTGAAGCCGGTGGTCGAGACGTTGGCCAGGTTGTTGGAAATGACCGTCAGGTTGGTGTCCTGAGCGGACAGGCCGGTTTTAGCGACCC          >  7:29805/1‑148                                                                                                                                                       GGCACCAGGCTGGCGCTTGATCTGGTAGAGCAGGTCTGCGAATTCGGCGCGATCACGCTTGAAGCCGGTGGTCGAGACGTTGGCCAGGTTGTTGGAAATGACCGTCAGGTTGGTGTCCTGAGCGGACAGGCCGGTTTTAGCGACCCA         >  4:220415/1‑147                                                                                                                                                         CACCAGGCTGGCGCTTGATCTGGTAGAGCAGGTCTGCGAATTCGGCGCGATCACGCTTGAAGCCGGTGGTCGAGACGTTGGCCAGGTTGTTGGAAATGACCGTCAGGTTGGTGTCCTGAGCGGACAGGCCGGTTTTAGCGACCCAAAGA     <  4:299193/149‑1                                                                                                                                                          ACCAGGCTGGCGCTTGATCTGGTAGAGCAGGTCTGCGAATTCGGCGCGATCACGCTTGAAGCCGGTGGTCGAGACGTTGGCCAGGTTGTTGGAAATGACCGTCAGGTTGGTGTCCTGAGCGGACAGGCCGGTTTTAGCGACCCAAAGAG    >  2:97999/1‑149                                                                                                                                                            CAGGCTGGCGCTTGATCTGGTAGAGCAGGTCTGCGAATTCGGCGCGATCACGCTTGAAGCCGGTGGTCGAGACGTTGGCCAGGTTGTTGGAAATGACCGTCAGGTTGGTGTCCTGAGCGGACAGGCCGGTTTTAGCGACCCAAAGAGCC  >  5:140631/1‑149                                                                                                                                                            CAGGCTGGCGCTTGATCTGGTAGAGCAGGTCTGCGAATTCGGCGCGATCACGCTTGAAGCCGGTGGTCGAGACGTTGGCCAGGTTGTTGGAAATGACCGTCAGGTTGGTGTCCTGAGCGGACAGGCCGGTTTTAGCGACCCAAAGAGCC  >  7:342411/1‑149                                                                                                                                                                                                                                                                                                                  TGGCCAACGTCTCGACCACCGGCTTCAAGCGTGATCGCGCCGAATTCGCAGACCTG‑CTCTACCAGATCAAGCGCCAGCCTGGTGCCCAGTCGACCCAGGACAGCGAGCTGCCCTCGGGCCTGCAGGTCGGTACCGGTGTGCGTATCGTGGGCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4979345‑4979191 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgggcaccAGGCTGGCGCTTGATCTGGTAGAGCAGGTCTGCGAATTCGGCGCGATCACGCTTGAAGCCGGTGGTCGAGACGTTGGCCAGGTTGTTGGAAATGACCGTCAGGTTGGTGTCCTGAGCGGACAGGCCGGTTTTAGCGACCCAAAGAGCC  >  NC_002947/4979266‑4979413

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.