| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5045679 | 34 (0.540) | 18 (0.290) | 18/262 | NT | 35.0% | intergenic (‑46/+47) | PP_4449/PP_5682 | hypothetical protein/hypothetical protein |
| ? | NC_002947 | 5222582 = | NA (NA) | coding (8/840 nt) | PP_4602 | AraC family transcriptional regulator | |||||
TAAGTCACCTCCTCCGCGCTTTTTGCTGAGCTGATGTCCTTAATGCGCATCAGCGCCTTTTCAATTACCCGCGCCTTGTCCAAGTGCTCGTCAACTAAAGCCATGACATTCGTCCTTGTGCGTTGAATTGTG‑‑‑‑A‑GCCTTCAGGTAGCCCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5045530‑5045679‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCG‑AAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAACGCCGATGCCATTTGG > NC_002947/5222582‑5222720 TAAGTCACCTCCTCCGCGCTTTTTGCTGAGCTGATGTCCTTAATGCGCATCAGCGCCTTTTCAATTACCCGCGCCTTGTCCAAGTGCTCGTCAACTAAAGCCATGACATTCGTCCTTGTGCGTTGAATTGTG‑‑‑‑A‑GCCTTCAGGTAGCCCC > 1:292639/1‑149 gTCCGCGGTTTTTGCTGAGCTGATGTCCTTAAAGGGCTTCAGCGCCATTTCAATTACCAGCTCCTTGTCCAAGTGCTCCTCAACTAAAGCGATGACATTCGTCCTTGTGCGTTGAATTGTG‑‑‑‑A‑GCCTTCAGGTAGCCCCTTCTATCAAA < 8:355740/147‑1 GCGCTTTTTGCTGAGCTGATGTCCTTAATGCGCATCAGCGCCTTTTCAATTACCCGCGCCTTGTCCAAGTGCTCGTCAACTAAAGCCATGACATTCGTCCTTGTGCGTTGAATTGTG‑‑‑‑A‑GCCTTCAGGTAGCCCCTTCTATCAAACAAAA < 3:92681/149‑1 GCGCTTTTTGCTGAGCTGATGTCCTTAATGCGCATCAGCGCCTTTTCAATTACCCGCGCCTTGTCCAAGTGCTCGTCAACTAAAGCCATGACATTCGTCCTTGTGCGTTGAATTGTG‑‑‑‑A‑GCCTTCAGGTAGCCCCTTCTATCAAACAA > 2:31645/1‑147 TTTGCTGAGCTGATGTCCTTAATGCGCATCAGCGCCTTTTCAATTACCCGCGCCTTGTCCTAGTGCTCGTCAACTAAAGCCATGACATTCGTCCTTGTGCGTTGAATTGTG‑‑‑‑A‑GCCTTCAGGTAGCCCCTTCTATCAAACAAAAGATAA < 3:81468/148‑1 ATGTCCTTAATGCGCATCAGCGCCTTTTCAATTACCCGCGCCTTGTCCAAGTGCTCGTCAACTAAAGCCATGACATTCGTCCTTGTGCGTTGAATTGTG‑‑‑‑A‑GCCTTCAGGTAGCCCCTTCTATCAAACAAAAGATAACCCACTGTTCTTT > 2:329308/1‑149 CTTAATGCGCATCAGCGCCTTTTCAATTACCCGCGCCTTGTCCAAGTGCTCGTCAACTAAAGCCATGACATTCGTCCTTGTGCGTTGAATTGTG‑‑‑‑A‑GCCTTCAGGTAGCCCCTTC < 8:50498/114‑1 CTTAATGCGCATCAGCGCCTTTTCAATTACCCGCGCCTTGTCCAAGTGCTCGTCAACTAAAGCCATGACATTCGTCCTTGTGCGTTGAATTGTG‑‑‑‑A‑GCCTTCAGGTAGCCCCTTC > 7:50498/1‑114 CATCAGCGCCTTTTCAATTACCCGCGCCTTGTCCAAGTGCTCGTCAACTAAAGCCATGACATTCGTCCTTGTGCGTTGAATTGTG‑‑‑‑A‑GCCTTCAGGTAGCCCCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCG‑AAAAAAAC < 1:31645/149‑1 CCTTTTCAATTACCCGCGCCTTGTCCAAGTGCTCGTCAACTAAAGCCATGACATTCGTCCTTGTGCGTTGAATTGTG‑‑‑‑A‑GCCTTCAGGTAGCCCCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCG‑AAAAAAACAGGCGCGC > 6:34112/1‑149 CCCGCGCCTTGTCCAAGTGCTCGTCAACTAAAGCCATGACATTCGTCCTTGTGCGTTGAATTGTG‑‑‑‑A‑GCCTTCAGGTAGCCCCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCG‑AAAAAAACAGGCGCGCGGGGTCAATGG < 7:188993/148‑1 CCGCGCCTTGACCAAGTGCTCGTCAACTAAAGCCATGACATTCGTCCTTGTGCGTTGAATTGTG‑‑‑‑A‑GCCTTCAGGTAGCCCCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCG‑AAAAAAACAGGCGCGCGGGGTCAATGGCG < 6:118219/149‑1 CTTGTCCAAGTGCTCGTCAACTAAAGCCATGACATTCGTCCTTGTGCGTTGAATTGTG‑‑‑‑A‑GCCTTCAGGTAGCCCCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCG‑AAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAG > 1:95500/1‑149 CTCGTCAACTAAAGCCATGACATTCGTCCTTGTGCGTTGAATTGTG‑‑‑‑A‑GCCTTCAGGTAGCCCCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCG‑AAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTC > 4:161780/1‑149 AACTAAATCCATGACATTCGTCCATTTGCCTTGAATTGTGTTCTACCCCATCAGGTAGCCCCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCG‑AAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTC < 1:329308/148‑1 AACTAAAGCCATGACATTCGTCCTTGTGCGTTGAATTGTG‑‑‑‑A‑GCCTTCAGGTAGCCCCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATAC > 7:138626/1‑149 GACATTCGTCCTTGTGCGTTGAATTGTG‑‑‑‑A‑GCCTTCAGGTAGCCCCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCG‑AAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGC > 3:118808/1‑147 GTCCTTGTGCGTTGAATTGTG‑‑‑‑A‑GCCTTCAGGTAGCCCCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCG‑AAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGC < 3:161780/149‑1 CGTTGAATTGTG‑‑‑‑A‑GCCTTCAGGTAGCCCCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCG‑AAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGA < 2:292639/149‑1 TTGTG‑‑‑‑A‑GCCTTCAGGTAGCCCCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCG‑AAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAACGC > 1:371755/1‑149 GGTAGCCCCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCG‑AAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAACGCCGATGCCATTTGG < 2:95500/149‑1 TAAGTCACCTCCTCCGCGCTTTTTGCTGAGCTGATGTCCTTAATGCGCATCAGCGCCTTTTCAATTACCCGCGCCTTGTCCAAGTGCTCGTCAACTAAAGCCATGACATTCGTCCTTGTGCGTTGAATTGTG‑‑‑‑A‑GCCTTCAGGTAGCCCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5045530‑5045679‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCG‑AAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAACGCCGATGCCATTTGG > NC_002947/5222582‑5222720 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |