New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5045679	34 (0.540)	18 (0.290)	18/262	NT	35.0%	intergenic (‑46/+47)	PP_4449/PP_5682	hypothetical protein/hypothetical protein
	?	NC_002947	5222582 =	NA (NA)					coding (8/840 nt)	PP_4602	AraC family transcriptional regulator

GCAACAGCGATACGCCGGCGAGCAGGGCCTCGAGGGTGGCGGGGCGGTGCTGGTCGAGGGACTGGTAGAGGGTTGCCAGGGGGGTGTCGGTCATCTGTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCG‑GCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAACGCCGA  >  NC_002947/5222439‑5222710                                                                                                                                                |                                                                                                                                  gcaACAGCGATACGCCGGCGAGCAGGGCCTCGAGGGTGGCGGGGCGGTGCTGGTCGAGGGACTGGTAGAGGGTTGCCAGGGGGGTGTCGGTCATCTGTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACTCGCTTCTAt                                                                                                                               >  3:211334/1‑148 (MQ=255)  caACAGCGATACGCCGGCGAGCAGGGCCTCGAGGGTGGCGGGGCGGTGCTGGTCGAGGGACTGGTAGAGGGTTGCCAGGGGGGTGTCGGTCATCTGTCGGTTCTCTGCTGGCTCGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATc                                                                                                                              >  1:163589/1‑148 (MQ=255)        cGATACGCCGGCGAGCAGGGCCTCGAGGGTGGCGGGGCGGTGCTGGTCGAGGGACTGGTAGAGGGTTGCCAGGGGGGTGTCGGTCATCTGTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACTCGCTTCTATcaaacaaa                                                                                                                       <  4:211334/149‑1 (MQ=255)          aTACGCCGGCGAGCAGGGCCTCGAGGGTGGCGGGGCGGTGCTGGTCGAGGGACTGGTAGAGGGTTGCCAGGGGGGTGTCGGTCATCTGTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATcaaacaa                                                                                                                        >  3:390943/1‑146 (MQ=255)              gCCGGCGAGCAGGGCCTCGAGGGTGGCGGGGCGGTGCTGGTCGAGGGACTGGTAGAGGGTTGCCAGGGGGGTGTCGGTCATCTGTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATaa                                                                                                                 <  6:147753/149‑1 (MQ=255)                cGGCGAGCAGGGCCTCGAGGGTGGCGGGGCGGTGCTGGTCGAGGGACTGGTAGAGGGTTGCCAGGGGGGTGTCGGTCATCTGTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTAt                                                                                                                               <  5:290875/133‑1 (MQ=255)                cGGCGAGCAGGGCCTCGAGGGTGGCGGGGCGGTGCTGGTCGAGGGACTGGTAGAGGGTTGCCAGGGGGGTGTCGGTCATCTGTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTAt                                                                                                                               >  6:290875/1‑133 (MQ=255)                        aGGGCCTCGAGGGTGGCGGGGCGGTGCTGGTCGAGGGACTGGTAGAGGGTTGCCAGGGGGGTGTCGGTCATCTGTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGttc                                                                                                       >  5:225682/1‑149 (MQ=255)                           gCCTCGAGGGTGGCGGGGCGGTGCTGGTCGAGGGACTGGTAGAGGGTTGCCAGGGGGGTGTCGGTCATCTGTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGttcttt                                                                                                    <  8:47957/149‑1 (MQ=255)                              tCGAGGGTGGCGGGGCGGTGCTGGTCGAGGGACTGGTAGAGGGTTGCCAGGGGGGTGTCGGTCATCTGTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGttctttc                                                                                                   >  1:71396/1‑147 (MQ=255)                                gAGGGTGGCGGGGCGGTGCTGGTCGAGGGACTGGTAGAGGGTTGCCAGGGGGGTGTCGGTCATCTGTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGc                                                                                               >  8:346679/1‑149 (MQ=255)                                gAGGGGGGGGGGGCGGTGCTGGTCGAGGGACTGGTAGAGGGGTGCCAGGGGGGTGTCGGTCATGTGTCGGTTATCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGc                                                                                               <  5:298058/149‑1 (MQ=37)                                 aGGGTGGCGGGGCGGTGCTGGTCGAGGGACTGGTAGAGGGTTGCCAGGGGGGTGTCGGTCATCTGTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGAGAACCCACTGTTCTTTCTAGc                                                                                               >  6:170677/1‑148 (MQ=255)                                   ggTGGCGGGGCGGTGCTGGTCGAGGGACTGGTAGAGGGTTGCCAGGGGGGTGTCGGTCATCTGTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGa                                                                                             <  8:195547/148‑1 (MQ=255)                                   ggTGGCGGGGCGGTGCTGGTCGAGGGACTGGTAGAGGGTTGCCAGGGGGGTGTCGGTCATCTGTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGa                                                                                             >  3:337876/1‑148 (MQ=255)                                           ggcggTGCGGGTCGAGGGACTGGTTGAGGGTTGCCAGGGGGGAGTCGGTCATCTGTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAg                                                                                    <  8:328309/149‑1 (MQ=255)                                                     ggcGAGGGACTGGTAGAGGGTTGCCAGGGGGGTGTCGGTCATCTGTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCggg                                                                           <  2:71396/146‑1 (MQ=255)                                                     gTCGAGGGACTGGTAGAGGGTTGCCAGGGGGGTGTCGGTCATCTGTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCggg                                                                           <  1:260101/148‑1 (MQ=255)                                                        gAGGGACTGGTAGAGGGTTGCCAGGGGGGTGTCGGTCATCTGTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTc                                                                        >  2:197944/1‑148 (MQ=255)                                                           ggACTGGTAGAGGGTTGCCAGGGGGGTGTCGGTCATCTGTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATg                                                                    >  7:93735/1‑149 (MQ=255)                                                           ggACTGGTAGAGGGTTGCCAGGGGGGTGGCGGGCATCTGTCGGTTCTCTGCGGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATg                                                                    <  6:6438/149‑1 (MQ=255)                                                                 gTAGAGGGTTGCCAGGGGGGTGTCGGGCATCTGTCGGTGCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGgcg‑gcg                                                             <  6:225682/149‑1 (MQ=255)                                                                  tAGAGGGTTGCCGGGGGGGTGTCGGTCATCTGTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTTGCGAAAAAAACAGGCGCGCGGGGTCAATGgcg‑gcg                                                             >  5:300355/1‑148 (MQ=255)                                                                    gagGGTTGCCAGGGGGGTGTCGGTCATCTGTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCG‑GCGaa                                                           <  1:197944/148‑1 (MQ=255)                                                                        gTTGCCAGGGGGGTGTCGGTCATCTGTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCG‑GCGAAGTGtt                                                      <  1:23095/149‑1 (MQ=255)                                                                           gCCCGGGGGGTGGCGGGCATCTGTCGGTGCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCG‑GCGAAGTGTTCAc                                                   <  2:163589/149‑1 (MQ=255)                                                                           gCCAGGGGGGTGTCGGTCATCTGTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCG‑GCGaa                                                           >  8:190384/1‑141 (MQ=255)                                                                           gCCAGGGGGGTGTCGGTCATCTGTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCG‑GCGaa                                                           <  7:190384/141‑1 (MQ=255)                                                                             cAGGGGGGTGTCGGTCATCTGTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGTCGCGCGGGGTCAATGGCG‑GCGAAGTGTTCActc                                                 >  6:203045/1‑149 (MQ=255)                                                                             cAGGGGGGTGTCGGTCATCTGTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCG‑GCGAAGTGTTCActc                                                 <  7:346679/149‑1 (MQ=255)                                                                                         ggTCATCTGTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGCGCGAAGTGTTCACTCTTCTATACGTg                                      <  1:3762/149‑1 (MQ=255)                                                                                         ggTCATCTGTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCG‑GCGAAGTGTTCACTCTTCTATACGTgg                                     >  5:142573/1‑149 (MQ=255)                                                                                         ggTCATCTGTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGCCG‑GCGAAGTGTTCACTCTTCTATACGTg                                      <  1:221570/148‑1 (MQ=255)                                                                                          gTCATCTGTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCG‑GCGAAGTGTTCACTCTTCTATACGTGGt                                    <  3:77573/149‑1 (MQ=255)                                                                                                tGTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCG‑GCGAAGTGTTCACTCTTCTATACGTGGt                                    >  3:122443/1‑143 (MQ=255)                                                                                                tGTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCG‑GCGAAGTGTTCACTCTTCTATACGTGGt                                    <  4:122443/143‑1 (MQ=255)                                                                                                  tCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCG‑GCGAAGTGTTCACTCTTCTATACGTGGTcaca                                <  4:390943/145‑1 (MQ=255)                                                                                                       tctcTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCG‑GCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCtgt                       >  2:266456/1‑149 (MQ=255)                                                                                                             ctggctggGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTCTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCG‑GCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGa                  >  4:85573/1‑148 (MQ=255)                                                                                                             ctggctggGCCGGCCTCTTCGCGGGTGAACCAGATTCTATCAAACAAAATATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCG‑GCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGcc                    <  6:300355/146‑1 (MQ=255)                                                                                                                 ctggGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCG‑GCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAggg             >  7:182401/1‑149 (MQ=38)                                                                                                                 ctggGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCG‑GCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAggg             <  5:170677/149‑1 (MQ=38)                                                                                                                       cggccTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCG‑GCGAAGTGTTCACTCTTCTATACGTg                                      >  3:248151/1‑118 (MQ=33)                                                                                                                       cggccTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCG‑GCGAAGTGTTCACTCTTCTATACGTg                                      <  4:248151/118‑1 (MQ=33)                                                                                                                         gccTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCG‑GCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAACGc     <  6:142573/149‑1 (MQ=32)                                                                                                                            tctTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCG‑GCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAACGCCGa  >  7:363484/1‑149 (MQ=31)                                                                                                                            tctTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCG‑GCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAACGCCGa  >  4:325476/1‑149 (MQ=31)                                                                                                                                                |                                                                                                                                  GCAACAGCGATACGCCGGCGAGCAGGGCCTCGAGGGTGGCGGGGCGGTGCTGGTCGAGGGACTGGTAGAGGGTTGCCAGGGGGGTGTCGGTCATCTGTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCG‑GCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAACGCCGA  >  NC_002947/5222439‑5222710

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.