New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5199250	66 (1.040)	6 (0.100)	6/256	NT	8.8%	coding (537/912 nt)	PP_4579	LysR family transcriptional regulator
	?	NC_002947	= 5199274	61 (1.000)					coding (561/912 nt)	PP_4579	LysR family transcriptional regulator

AACTTGCGCGAGCAGCTGCAGAAGGGCTTTCTTGACGTTATCTTGCAGACCGACTTGCTGCGCGAGCAATCGATCCGCAGCCTCGACCTGGCACGCTACCCAATGGGCTGGGTGGTGGCCGCAGGCGCCCACCAGCACCGGGACTATGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5199101‑5199250 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgcgCTCGCGCCCAAGTTCGGCCAGCGACGCATAGTCCCGGTGCTGGTGGGCGCCTGCGGCCACCACCCAGCCCATTGGGTAGCGTGCCAGGTCGAGGCTGCGGATCGATTGCTCGCGCAGCAAGTCGGTCTGCAAGATAACGTCAAGAAAG  <  NC_002947/5199274‑5199127                                                                                                                                                                                                                                                                                                            AACTTGCGCGAGCAGCTGCAGAAGGGCTTTCTTGACGTTATCTTGCAGACCGACTTGCTGCGCGAGCAATCGATCCGCAGCCTCGACCTGGCACGCTACCCAATGGGCTGGGTGGTGGCCGCAGGCGCCCACCAGCACCGGGACTATGC                                                                                                                                                       <  5:356190/149‑1          GAGCAGCTGCAGAAGGGCTTTCTTGACGTTATCTTGCAGACCGACTTGCTGCGCGAGCAATCGATCCGCAGCCTCGACCTGGCACGCTACCCAATGGGCTGGGTGGTGGCCGCAGGCGCCCACCAACACCGGGACTATGCGCTCGCGCC                                                                                                                                              >  1:375198/1‑149                      AAGGGCTTTCTTGACGTTATCTTGCAGACCGACTTGCTGCGCGAGCAATCGATCCGCAGCCTCGACCTGGCACGCTACCCAATGGGCTGGGTGGTGGCCGCAGGCGCCCACCAGCACCGGGACTA                                                                                                                                                          >  1:55576/1‑125                      AAGGGCTTTCTTGACGTTATCTTGCAGACCGACTTGCTGCGCGAGCAATCGATCCGCAGCCTCGACCTGGCACGCTACCCAATGGGCTGGGTGGTGGCCGCAGGCGCCCACCAGCACCGGGACTA                                                                                                                                                          <  2:55576/125‑1                                  GACGTTATCTTGCAGACCGACTTGCTGCGCGAGCAATCGATCCGCAGCCTCGACCTGGCACGCTACCCAATGGGCTGGGTGGTGGCCGCAGGCGCCCACCAACACCGGGACTATGCGCTCGCGCCCAAGTTCGGCCAGCGACGCATA                                                                                                                        <  2:375198/147‑1                                   ACGTTATCTTGCAGACCGACTTGCTGCGCGAGCAATCGATCCGCAGCCTCGACCTGGCACGCTACCCAATGGGCTGGGTGGTGGCCGCAGGCGCCCACCAGCACCGGGACTATGCGCTCGCGCCCAAGTTCGGCCAGCGACGCATAGTC                                                                                                                     <  3:204274/149‑1                                      TTATCTTGCAGACCGACTTGCTGCGCGAGCAATCGATCCGCAGCCTCGACCTGGCACGCTACCCAATGGGCTGGGTGGTGGCCGCAGGCGCCCACCAGCACCGGGACTATGCGCTCGCGCCCAAGTTCGGCCAGCGACGCATAGTCCCG                                                                                                                  <  6:355086/149‑1                                                                                   TCGACCTGGCACGCTACCCAATGGGCTGGGTGGTGGCCGCAGGCGCCCACCAGCACCGGGACTATGCGCTCGCGCCCAAGTTCGGCCAGCGACGCAT                                                                                                                         >  3:356408/1‑97                                                                                   TCGACCTGGCACGCTACCCAATGGGCTGGGTGGTGGCCGCAGGCGCCCACCAGCACCGGGACTATGCGCTCGCGCCCAAGTTCGGCCAGCGACGCAT                                                                                                                         <  4:356408/97‑1                                                                                                                                                  ATGCGCTCGCGCCCAAGTTCGGCCAGCGACGCATAGTCCCGGTGCTGGTGGGCGCCTGCGGCCACCACCCAGCCCATTGGGTAGCGTGCCAGGTCGAGGCTGCGGATCGATTGCTCGCGCAGCAAGTCGGTCTGCAAGATAACGTCAA       <  6:182260/148‑1                                                                                                                                                    GCGCTCGCGCCCAAGTTCGGCCAGCGACGCATAGTCCCGGTGCTGGTGGGCGCCTGCGGCCACCACCCAGCCCATTGGGTAGCGTGCCAGGTCGAGGCTGCGGATCGATTGCTCGCGCAGCAAGT                            <  1:78559/125‑1                                                                                                                                                    GCGCTCGCGCCCAAGTTCGGCCAGCGACGCATAGTCCCGGTGCTGGTGGGCGCCTGCGGCCACCACCCAGCCCATTGGGTAGCGTGCCAGGTCGAGGCTGCGGATCGATTGCTCGCGCAGCAAGT                            >  2:78559/1‑125                                                                                                                                                      GCTCGCGCCCAAGTTCGGCCAGCGACGCATAGTCCCGGTGCTGGTGGGCGCCTGCGGCCACCACCCAGCCCATTGGGTAGCGTGCCAGGTCGAGGCTGCGGATCGATTGCTCGCGCAGCAAGTCGGTCTGCAAGATAACGTCAAGAAAG  >  1:27506/1‑149                                                                                                                                                      GCTCGCGCCCAAGTTCGGCCAGCGACGCATAGTCCCGGTGCTGGTGGGCGCCTGCGGCCACCACCCAGCCCATTGGGTAGCGTGCCAGGTCGAGGCTGCGGATCGATTGCTCGCGCAGCAAGTCGGTCTGCAAGATAACGTCAAGAAAG  <  2:124973/149‑1                                                                                                                                                      GCTCGCGCCCAAGTTCGGCCAGCGACGCATAGTCCCGGTGCTGGTGGGCGCCTGCGGCCACCACCCAGCCCATTGGGTAGCGTGCCAGGTCGAGGCTGCGGATCGATTGCTCGCGCAGCAAGTCGGTCTGCAAGATAACGTCAAGAAAG  >  6:166118/1‑149                                                                                                                                                                                                                                                                                                            AACTTGCGCGAGCAGCTGCAGAAGGGCTTTCTTGACGTTATCTTGCAGACCGACTTGCTGCGCGAGCAATCGATCCGCAGCCTCGACCTGGCACGCTACCCAATGGGCTGGGTGGTGGCCGCAGGCGCCCACCAGCACCGGGACTATGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5199101‑5199250 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgcgCTCGCGCCCAAGTTCGGCCAGCGACGCATAGTCCCGGTGCTGGTGGGCGCCTGCGGCCACCACCCAGCCCATTGGGTAGCGTGCCAGGTCGAGGCTGCGGATCGATTGCTCGCGCAGCAAGTCGGTCTGCAAGATAACGTCAAGAAAG  <  NC_002947/5199274‑5199127

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.