New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5472435 =	76 (1.200)	4 (0.060)	4/258	NT	5.9%	coding (5/519 nt) coding (384/420 nt)	rlmH rsfS	23S rRNA (pseudouridine(1915)‑N(3))‑methyltransferase RlmH ribosomal silencing factor RsfS
	?	NC_002947	5472494 =	53 (0.860)					coding (325/420 nt)	rsfS	ribosomal silencing factor RsfS

CTGTGGCAGGGTGCCGAGCAAAGCCGTGCCGCCGATGGCAAGCACCACAGCCCGGACCATGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5472497‑5472435 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgccACAGACGCTCAAGGTCGTAGAACTGGCGGGCAGCGGCGGTCATCATGTGCACGATGACGTCGTTCAGGTCCAGCAGCACCCAGTCGCTGTCGCCCTTGCCTTCTTCACCCAGTGGCTGGGCGCCCTTGGCCTTGACTGCTTCACG  >  NC_002947/5472494‑5472638                                                                                                                                                                                                                  CTGTGGCAGGGTGCCGAGCAAAGCCGTGCCGCCGATGGCAAGCACCACAGCCCGGACCATGCCACAGACGCTCAAGGTCGTAGAACTGGCGGGCAGCGGCGGTCATCATGTGCACGATGACGTCGTTCAGGTCCAGCA                                                                        <  3:36489/138‑1 CTGTGGCAGGGTGCCGAGCAAAGCCGTGCCGCCGATGGCAAGCACCACAGCCCGGACCATGCCACAGACGCTCAAGGTCGTAGAACTGGCGGGCAGCGGCGGTCATCATGTGCACGATGACGTCGTTCAGGTCCAGCA                                                                        >  4:36489/1‑138    TGGCAGGGTGCCGAGCAAAGCCGTGCCGCCGATGGCAAGCACCACAGCCCGGACCATGCCACAGACGCTCAAGGTCGTAGAACTGGCGGGCAGCGGCGGTCATCATGTGCACGATGACGTCGTTCAGGTCCAGCAGCACCCAGTCGCTG                                                          >  4:310598/1‑149                                    TGGCAAGCACCACAGCCCGGACCATGCCACAGACGCTCAAGGTCGTAGAACTGGCGGGCAGCGGCGGTCATCATGTGCACGATGACGTCGTTCAGGTCCAGCAGCACCCAGTCGCTGTCGCCCTTGCCTTCTTCACCCAGTGGCTGGGC                          <  3:310598/149‑1                                                   acggcACCATGCCACAGACGCTCAAGGTCGTAGAACTGGCGGGCAGCGGCGCTCATCATGTGCACGATCACGTCCTTCAGGTCCAGCAGCACCCAGTCGCTGTCGCCCTTGCCTTCTTCACACAGTGGCTGGGCGCCCTAGGCATTGAC           >  4:85875/6‑149                                                            TGCCACAGACGCTCAAGGTCGTAGAACTGGCGGGCAGCGGCGGTCATCATGTGCACGATGACGTCGTTCAGGTCCAGCAGCACCCAGTCGCTGTCGCCCTTGCCTTCTTCACCCAGTGGCTGGGCGCCCTTGGCCTTGACTGCTTCACG  >  3:216294/1‑149                                                                                                                                                                                                                  CTGTGGCAGGGTGCCGAGCAAAGCCGTGCCGCCGATGGCAAGCACCACAGCCCGGACCATGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5472497‑5472435 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgccACAGACGCTCAAGGTCGTAGAACTGGCGGGCAGCGGCGGTCATCATGTGCACGATGACGTCGTTCAGGTCCAGCAGCACCCAGTCGCTGTCGCCCTTGCCTTCTTCACCCAGTGGCTGGGCGCCCTTGGCCTTGACTGCTTCACG  >  NC_002947/5472494‑5472638

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.