| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 6019248 = | 64 (1.010) | 3 (0.060) | 3/220 | NT | 5.6% | intergenic (‑49/+96) | dadX/dadA‑II | alanine racemase/D‑amino acid:quinone oxidoreductase |
| ? | NC_002947 | 6019324 = | 48 (0.910) | intergenic (‑125/+20) | dadX/dadA‑II | alanine racemase/D‑amino acid:quinone oxidoreductase | |||||
ATATCTCCCGTTATGGCAATAGCCGGGAAGTGGCCAAGCACGGGCAAAGCGCGCCGGCTCACCAGCAGTAACAGCCTGTGCCGGCCCATTTGCGGGCTTGCCCGCTCCCACAGGAACACCACCGCTTTTGAAAGCTGTGCACGACCTGTGGGAGCGGGCAAGCCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/6019414‑6019248‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgtgggagcgggcaagcccgcAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTTGCCCGTGCTTGGCCACTTCCCGGCTATTGCCATAACGGGAGATATCCAGGCCTTCGGCACTGATCTGCGGCTTCTTGCGCGCAATCAGGTCGGCCAGCAGGC > NC_002947/6019324‑6019471 ATATCTCCCGTTATGGCAATAGCCGGGAAGTGGCCAAGCACGGGCAAAGCGCGCCGGCTCACCAGCAGTAACAGCCTGTGCCGGCCCATTTGCGGGCTTGCCCGCTCCCACAGGAACACCACCGCTTTTGAAAGCTGTGCACGACCTGT < 6:53174/149‑1ATATCTCCCGTTATGGCAATAGCCGGGAAGTGGCCAAGCACGGGCAAAGCGCGCCGGCTCACCAGCAGTAACAGCCTGTGCCGGCCCATTTGCGGGCTTGCCCGCTCCCACAGGAACACCACCGCTTTTGAAAGCTGTGCACGACCTGT < 5:162337/149‑1 ATCTCCCGTTATGGCAATAGCGGGGATGTGGCCAAGCACGGGAAAAGCGCTTTTGCTCACCAGCAGTAACAGCCTGTGCCGGCCCATTTGCGGGCTTGCCCGCTCCCACAGGAACACCACCGCTTTTGAAAGCTGTGCACGACCTGTG < 1:126784/148‑1 TCTCCCGTTATGGCAATAGCCGGGAAGTGGCCAAGCACGGGCAAAGCGCGCCGGCTCACCAGCAGTAACAGCCTGTGCCGGCCCATTTGCGGGCTTGCCCGCTCCCACAGGAACACCACCGCTTTTGAAAGCTGTGCACGACCTGTGG < 7:115023/148‑1 CCCGTTATGGCAATAGCCGGGAAGTGGCCAAGCACGGGCAAAGCGCGCCGGCTCACCAGCAGTAACAGCCTGTGCCGGCCCATTTGCGGGCTTGCCCGCTCCCACAGGAACACCACCCCATTTGAAAGCTGTGCACGCCCTGTGGGAGC > 2:203709/1‑149 CCGTTATGGCAATAGCCGGGAAGTGGCCAAGCACGGGCAAAGCGCGCCGGCTCACCAGCAGTAACAGCCTGTGCCGGCCCATTTGCGGGCTTGCCCGCTCCCACAGGAACACCACCGCTTTTGAAAGCTGTGCACGACCTGTGGGAG < 1:16562/147‑1 GTTATGGCAATAGCCGGGAAGTGGCCAAGCACGGGCAAAGCGCGCCGGCTCACCAGCAGTAACAGCCTGTGCCGGCCCATTTGCGGGCTTGCCCGCTCCCACAGGAACACCACCGCTTTTGAAAGCTGTGCACGACCTGTGGGAGCGGG > 7:351120/1‑149 GTTATGGCAATAGCCGGGAAGTGGCCAAGCACGGGCAAAGCGCGCCGGCTCACCAGCAGTAACAGCCTGTGCCGGCCCATTTGCGGGCTTGCCCGCTCCCACAGGAACACCACCGCTTTTGAAAGCTGTGCACGACCTGTGGGA > 1:137961/1‑144 GTTATGGCAATAGCCGGGAAGTGGCCAAGCACGGGCAAAGCGCGCCGGCTCACCAGCAGTAACAGCCTGTGCCGGCCCATTTGCGGGCTTGCCCGCTCCCACAGGAACACCACCGCTTTTGAAAGCTGTGCACGACCTGTGGGA < 2:137961/144‑1 GCAATAGCCGGGAAGTGGCCAAGCACGGGCAAAGCGCGCCGGCTCACCAGCAGTAACAGCCTGTGCCGGCCCATTTGCGGGCTTGCCCGCTCCCACAGGAACACCACCGCTTTTGAAAGCTGTGCACGACCTGTGGGAGCGGGCAAGC < 6:401298/148‑1 CAATAGCCGGGAAGTGGCCAAGCACGGGCAAAGCGCGCCGGCTCACCAGCAGTAACAGCCTGTGCCGTCCCATTTGCGGGCTTGCCCGCTCCCACAGGAACACCACCGCTTTTGAAAGCTGTGCACGACCTGTGGGAGCGGGCAAGCCC < 1:317637/149‑1 GCTCCCACAGGAACACCACCGCTTTTGAAAGCTGTGCACGACCTGTGGGAGCGGGCAAGCCCGCAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTTGCCCGTGCTTGGCCACTTCCCGGCTATTGCCATAACGG > 2:45283/1‑148 CCACAGGAACACCACCGCTTTTGAAAGCTGTGCACGACCTGTGGGAGCGGGCAAGCCCGCAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTTGCCCGTGCTTGGCCACTTCCCGGCTATTGCCATAACGGGAGA > 1:262814/1‑148 CACAGGAACACCACCGCTTTTGAAAGCTGTGCACGACCTGTGGGAGCGGGCAAGCCCGCAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTTGCCCGTGCTTGGCCACTTCCCGGCTATTGCCATAACGGGAGATA > 4:101971/1‑149 TGTGGGAGCGGGCAAGCCCGCAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTTGCCCGTGCTTGGCCACTTCCCGGCTATTGCCATAACGGGAGATATCCAGGCCTTCGGCACTGATCTGCGGCTTCTTGCGCG > 6:380340/1‑148 gGGGAGCGGGCAAGCCCGCAAATGGTCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTTGCCCGTGCTTGGCCACTTCCCGGCTATTGCCATAACGGGAGATATCCAGGCCTTCGGCACTGATCTGCGGCTTCTTGCGCGC < 2:317637/146‑1 TGGGAGCGGGCAAGCCCGCAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTTGCCCGTGCTTGGCCACTTCCCGGCTATTGCCATAACGGGAGATATCCAGGCCTTCGGCACTGATCTGCGGCTTCTTGCGCGCAA > 7:349789/1‑149 GGGAGCGGGCAAGCCCGCAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTTGCCCGTGCTTGGCCACTTCCCGGCTATTGCCATAACGGGAGATATCCAGGCCTTCGGCACTGATCTGCGGCTTCTTGCGCGCAAT > 5:119195/1‑149 GGAGGGTGCAAGCCCGCAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTTGCCCGTGCTTGGCCACTTCCCGGCTATTGCCATAACGGGAGATATCCAGGCCTTCGGCACTGATCTGCGGCTTCTTGCGCGCAATC < 8:158713/149‑1 GGGCAAGCCCGCAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTTGCCCGTGCTTGGCCACTTCCCGGCTATTGCCATAACGGGAGATATCCAGGCCTTCGGCACTGATCTGCGGCTTCTTGCGCGCAATCAGGTC < 6:162337/149‑1 GGCAAGCCCGCAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTTGCCCGTGCTTGGCCACTTCCCGGCTATTGCCATAACGGGAGATATCCAGGCCTTCGGCACTGATCTGCGGCTTCTTGCGCGCAATCAGGTCG > 3:348994/1‑149 CAAGCCCGCAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTTGCCCGTGCTTGGCCACTTCCCGGCTATTGCCATAACGGGAGATATCCAGGCCTTCGGCACTGATCTGCGGCTTCTTGCGCGCAATCAGGTCGGC < 2:383106/149‑1 AAGCCCGCAAATGGGCCGGCACAGGCTGTTACTGCTGCTGAGCCGGCGCGCATTGCCCCTCCTTGGCCACTTCCCGGCTATTGCCATAACGGGAGATATCCAGGCCTTCGGCACTGATCTGCGGCTACTTGCGCGCAATCAGGTCGGC > 3:291673/1‑148 CCCGCAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTTGCCCGTGCTTGGCCACTTCCCGGCTATTGCCATAACGGGAGATATCCAGGCCTTCGGCACTGATCTGCGGCTTCTTGCGCGCAATCAGGTCGGCCgcc > 5:338940/1‑146 CGCAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTTGCCCGTGCTTGGCCACTTCCCGGCTATTGCCATAACGGGAGATATCCAGGCCTTCGGCACTGATCTGCGGCTTCTTGCGCGCAATCAGGTCGGCCgcctg < 6:338940/149‑6 CAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTTGCCCGTGCTTGGCCACTTCCCGGCTATTGCCATAACGGGAGATATCCAGGCCTTCGGCACTGATCTGCGGCTTCTTGCGCGCAATCAGGTCGGCCAGCAGGC < 5:66086/149‑1 CAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTTGCCCGTGCTTGGCCACTTCCCGGCTATTGCCATAACGGGAGATATCCAGGCCTTCGGCACTGATCTGCGGCTTCTTGCGCGCAATCAGGTCGGCCAGCAGGC < 7:159517/149‑1 ATATCTCCCGTTATGGCAATAGCCGGGAAGTGGCCAAGCACGGGCAAAGCGCGCCGGCTCACCAGCAGTAACAGCCTGTGCCGGCCCATTTGCGGGCTTGCCCGCTCCCACAGGAACACCACCGCTTTTGAAAGCTGTGCACGACCTGTGGGAGCGGGCAAGCCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/6019414‑6019248‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgtgggagcgggcaagcccgcAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTTGCCCGTGCTTGGCCACTTCCCGGCTATTGCCATAACGGGAGATATCCAGGCCTTCGGCACTGATCTGCGGCTTCTTGCGCGCAATCAGGTCGGCCAGCAGGC > NC_002947/6019324‑6019471 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |