New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2953620	39 (0.610)	5 (0.080)	4/254	NT	11.3%	coding (878/1383 nt)	PP_2586	putative amino acid transporter
	?	NC_002947	= 2953671	41 (0.680)					coding (827/1383 nt)	PP_2586	putative amino acid transporter

TCACCAACTGGCCGAATGCCCGTGGCAATGCGCCGTCGCGGCCCATGGCGAACAGTACGCGCGACACGCTGGCCTGGGACACCATGGCCGAGGCGAAGCAGCCCGCCACGTAGGTAGCGGTGAAGGCGGTTACCAGCAGCTCGCCGCCCACCCGGCGCATCACGTCAACCGACGCCGAATCCGGATCGGCGAAGCTGCCCCAATCGGGGAACACCATCTGTGCGCAATAAGACACCACCAGAAATAGCAGGCCGCCGATCAACGACACCGCCAGAATCGCCACGGGAAT  >  NC_002947/2953480‑2953768                                                                                                                                             |                                                                                                                                                     tCACCAACTGGCCGAATGCCCGTGGCAATGCGCCGTCGCGGCCCATGGCGAACAGTACGCGCGACACGCTGGCCTGGGACACCATGGCCGAGGCGAAGCAGCCCGCCACGTAGGTAGCGGTGAAGGCGGTTACCAGCAGCTc                                                                                                                                                     >  1:265316/1‑142 (MQ=255) tCACCAACTGGCCGAATGCCCGTGGCAATGCGCCGTCGCGGCCCATGGCGAACAGTACGCGCGACACGCTGGCCTGGGACACCATGGCCGAGGCGAAGCAGCCCGCCACGTAGGTAGCGGTGAAGGCGGTTACCAGCAGCTc                                                                                                                                                     <  2:265316/142‑1 (MQ=255)   aCCAACTGGCCGAATGCCCGTGGCAATGCGCCGTCGCGGCCCATGGCGAACAGTACGCGCGACACGCTGGCCTGGGACACCATGGCCGAGGCGAAGCAGCCCGACACGTAGGTAGCGGTGAAGGCGGTTACCAGCAGCTtcgccgatcc                                                                                                                                            >  8:196537‑M1/1‑139 (MQ=255)     cAACTGGCCGAATGCCCGTGGCAATGCGCCGTCGCGGCCCATGGCGAACAGTACGCGCGACACGCTGGCCTGGGACACCATGGCCGAGGCGAAGCAGCCCGCCACGTAGGTAGCGGTGAAGGCGGTTACCAGCAGCTCGCCGCCCAccc                                                                                                                                          <  5:194001/149‑1 (MQ=255)           gCCGAATGCCCGTGGCAATGCGCCGTCGCGGCCCATGGCGAACAGTACGCGCGACACGCTGGCCTGGGACACCATGGCCGAGGCGAAGCAGCCCGCCACGTAGGTAGCGGTGAAGGCGGTTACCAGCAGCTCGCCGCCCACCCGGCGCa                                                                                                                                    >  3:355558/1‑149 (MQ=255)            ccGAATGCCCGTGGCAATGCGCCGTCGCGGCCCATGGCGAACAGTACGCGCGACACGCTGGCCTGGGACACCATGGCCGAGGCGAAGCAGCCCGCCACGTAGGTAGCGGTGAAGGCGGTTACCAGCAGCTCGCCGCCCACCCGGCGCAt                                                                                                                                   <  3:44310/149‑1 (MQ=255)                      gTGGCAATGCGCCGTCGCGGCCCATGGCGAACAGTACGCGCGACACGCTGGCCTGGGACACCATGGCCGAGGCGAAGCAGCCCGCCACGTAGGTAGCGGTGAAGGCGGTTACCAGCAGCTCGCCGCCCACCCGGCGCATGACGTCAAcc                                                                                                                         <  3:154919/149‑1 (MQ=255)                      gTGGCAATGCGCCGTCGCGGCCCATGGCGAACAGTACGCGCGACACGCTGGCCTGGGACACCATGGCCGAGGCGAAGCAGCCCGCCACGTAGGTAGCGGTGAAGGCGGTTACCAGCAGCTCGCCGCCCACCCGGCGCATCACGTCAAcc                                                                                                                         <  5:232782/149‑1 (MQ=255)                         gCAATGCGCCGTCGCGGCCCATGGCGAACAGTACGCGCGACACGCTGGCCTGGGACACCATGGCCGAGGCGAAGCAGCCCGCCACGTAGGTAGCGGTGAAGGCGGTTACCAGCAGCTCGCCGCCCACCCGGCGCATCACGTCAACCGAc                                                                                                                      <  2:364930/149‑1 (MQ=255)                                  cGTCGCGGCCCATGGCGAACAGTACGCGCGACACGCTGGCCTGGGACACCATGGCCGAGGCGAAGCAGCCCGCCACGTAGGTAGCGGTGAAGGCGGTTACCAGCAGCTtcgccgatccggattcggcgtcggttgacgtgatgcgccgg                                                                                                             >  2:209312‑M1/1‑108 (MQ=255)                                  cGTCGCGGCCCATGGCGAACAGTACGCGCGACACGCTGGCCTGGGACACCATGGCCGAGGCGAAGCAGCCCGCCACGTAGGTAGCGGTGAAGGCGGTTACCAGCAGCTCGCCGCCCACCCGGCGCATCACGTCAACCGACGCCGAATcc                                                                                                             >  5:253928/1‑149 (MQ=255)                                  cGTCGCGGCCCATGGCGAACAGTACGCGCGACACGCTGGCCTGGGACACCATGGCCGAGGCGAAGCAGCCCGCCACGTAGGTAGCGGTGAAGGCGGTTACCAGCAGCTCGCCGCCCACCCGGCGCATCACGTCAACCGACGCCGAATcc                                                                                                             <  4:274996/149‑1 (MQ=255)                                   gTCGCGGCCCATGGCGAACAGTACGCGCGACACGCTGGCCTGGGACACCATGGCCGAGGCGAAGCAGCCCGCCACGTAGGTAGCGGTGAAGGCGGTTACCAGCAGCTCGCCGCCCACCCGGCGCATCACGTCAACCGACGCCGAATCCg                                                                                                            >  3:151851/1‑149 (MQ=255)                                              tGGCGAACAGTACGCGCGACACGCTGGCCTGGGACACCATGGCCGAGGCGAAGCAGCCCGCCACGTAGGTAGCGGTGAAGGCGGTTACCAGCAGCTCGCCGCCCACCCGGCGCATCACGTCAACCGACGCCGAATCCGGATCGGCGAag                                                                                                 <  7:21064‑M2/149‑3 (MQ=255)                                                  gAACAGTACGCGCGACACGCTGGCCTGGGACACCATGGCCGAGGCGAAGCAGCCCGCCACGTAGGTAGCGGTGAAGGCGGTTACCAGCAGCTtcgccgatccggattcggcgtcggttgacgtgatgcgccgggtgggcggcgagctgc                                                                                             <  7:196537‑M1/149‑58 (MQ=255)                                                  gAACAGTACGCGCGACACGCTGGCCTGGGACACCATGGCCGAGGCGAAGCAGCCCGCCACGTAGGTAGCGGTGAAGGCGGTTACCAGCAGCTtcgccgatccggattcggcgtcggttgacgtgatgcgccgggtgggcggcgagctgc                                                                                             <  1:209312‑M1/149‑58 (MQ=255)                                                    acacTACGCGCGACACGCTGGCCTGGGACACCATGGCCGAGGCGAAGCAGCCCGCCACGTAGGTAGCGGTGAAGGCGGTTACCAGCAGCTtcgccgatccggattcggcgtcggttgacgtgatgcgccgggtgggcggcgagctgctg                                                                                           <  4:199120‑M1/149‑60 (MQ=255)                                                        tACGCGCGACACGCTGGCCTGGGACACCATGGCCGAGGCGAAGCAGCCCGCCACGTAGGTAGCGGTGAAGGCGGTTACCAGCAGCTCGCCGCCCACCCGGCGCATCACGTCAACCGACGCCGAATCCGGATCGGCGAAGCTGCCCCAAt                                                                                       >  2:26953/1‑149 (MQ=255)                                                               gACACGCTGGCCTGGGACACCATGGCCGAGGCGAAGCAGCCCGCCACGTAGGTAGCGGTGAAGGCGGTTACCAGCAGCTCGCCGCCCACCCGGCGCATCACGTCAACCGACGCCGAATCCGGATCGGCGAAGCTGCCCCAATCGGGGaa                                                                                <  4:261045/149‑1 (MQ=255)                                                                acacGCTGGCCTGGGACACCATGGCCGAGGCGAAGCAGCCCGCCACGTAGGTAGCGGTGAAGGCGGTTACCAGCAGCTCGCCGCCCACCCGGCGCATCACGTCAGCCGACGCCGAATCCGGATCGGCGAAGCTGCCCCAATCGGGGAac                                                                               >  2:375053/1‑149 (MQ=255)                                                                 cacGCTGGCCTGGGACACCATGGCCGAGGCGAAGCAGCCCGCCACGTAGGTAGCGGTGAAGGCGGTTACCAGCAGCTCGCCGCCCACCCGGCGCATCACGTCAACCGACGCCGAATCCGGATCGGCGAAGCTGCCCCAATCGGGGAaca                                                                              <  3:169793/149‑1 (MQ=255)                                                                        gCCTGGGACACCATGGCCGAGGCGAAGCAGCCCGCCACGTAGGTAGCGGTGAAGGCGGTTACCAGCAGCTCGCCGCCCACCCGGCGCATCACGTCAACCGACGCCGAATCCGGATCGGCGAAGCTGCCCCAATCggg                                                                                   <  3:24569/137‑1 (MQ=255)                                                                        gCCTGGGACACCATGGCCGAGGCGAAGCAGCCCGCCACGTAGGTAGCGGTGAAGGCGGTTACCAGCAGCTCGCCGCCCACCCGGCGCATCACGTCAACCGACGCCGAATCCGGATCGGCGAAGCTGCCCCAATCggg                                                                                   >  4:24569/1‑137 (MQ=255)                                                                             ggACACCATGGCCGAGGCGAAGCAGCCCGCCACGTAGGTAGCGGTGAAGGCGGTTACCAGCAGCTCGCCGCCCAccc                                                                                                                                          >  7:324693/1‑77 (MQ=255)                                                                             ggACACCATGGCCGAGGCGAAGCAGCCCGCCACGTAGGTAGCGGTGAAGGCGGTTACCAGCAGCTCGCCGCCCAccc                                                                                                                                          <  8:324693/77‑1 (MQ=255)                                                                               acacCATGGCCGAGGCGAAGCAGCCCGCCACGTAGGTAGCGGTGAAGGCGGTTACCAGCAGCTCGCCGCCCACCCGGCGCATCACGTCAACCGACGCCGAATCCGGATCGGCGAAGCTGCCCCAATCGGGGAACACCATCTGTGCGCaa                                                                >  4:47327/1‑149 (MQ=255)                                                                                  ccATGGCCGAGGCGAAGCAGCCCGCCACGTAGGTAGCGGTGAAGGCGGTTACCAGCAGCTCGCCGCCCACCCGGCGCATCACGTCAACCGACGCCGAATCCGGATCGGCGAAGCTGCCCCAATCGGGGAACACCATCTGTGCGCAATaa                                                             <  4:151851/149‑1 (MQ=255)                                                                                   cATGGCCGAGGCGAAGCAGCCCGCCACGTAGGTAGCGGTGAAGGCGGTTACCAGCAGCTCGCCGCCCACCCGGCGCATCACGTCAACCGACGCCGAATCCGGATCGGCGAAGCTGCCCCAATCGGGGAACACCATCTGTGCGCAAt                                                               >  2:254285/1‑146 (MQ=255)                                                                                   cATGGCCGAGGCGAAGCAGCCCGCCACGTAGGTAGCGGTGAAGGCGGTTACCAGCAGCTCGCCGCCCACCCGGCGCATCACGTCAACCGACGCCGAATCCGGATCGGCGAAGCTGCCCCAATCGGGGAACACCATCTGTGCGCAAt                                                               >  4:94521/1‑146 (MQ=255)                                                                                     tGGCCGAGGCGAAGCAGCCCGCCACGTAGGTAGCGGTGAAGGCGGTTACCAGCAGCTCGCCGCCCACCCGGCGCATCACGTCAACCGACGCCGAATCCGGATCGGCGAAGCTGCCCCAATCGGGGAACACCATCTGTGCGCAATAAGac                                                          <  8:21064/149‑1 (MQ=255)                                                                                          gAGGCGAAGCAGCCCGCCACGTAGGTAGCGGTGAAGGCGGTTACCAGCAGCTCGCCGCCCACCCGGCGCATCACGTCAACCGACGCCGAATCCGGATCGGCGAAGCTGCCCCAATCGGGGAACACCATCTGTGCGCAATAAGAcaccac                                                     <  4:355558/149‑1 (MQ=255)                                                                                               gAAGCAGCCCGCCACGTAGGTAGCGGTGAAGGCGGTTACCAGCAGCTCGCCGCCCACCCGGCGCATCACGTCAACCGACGCCGAATCCGGATCGGCGAAGCTGCCCCAATCGGGGAACACCATCTGTGCGCAATAAGACACCACCAGa                                                 >  1:84195/1‑148 (MQ=255)                                                                                               gAAGCAGCCCGCCACGTAGGTAGCGGTGAAGGCGGTTACCAGCAGCTCGCCGCCCACCCGGAGCATCACGTCAACCGACGCCGAATCCGGATCGGCGAAGCTGCCCCAATCGGGGAACACCATCTGTGCGCAATAAGACACCACCAGa                                                 >  2:69537/1‑148 (MQ=255)                                                                                                     gcCCGCCACGTAGGTAGCGGTGAAGGCGGTTACCAGCAGCTCGCCGCCCACCCGGCGCATCACGTCAACCGACGCCGCATCCGGAGCGGCGAAGCTGCCCCAATCgg                                                                                    >  6:311615/1‑107 (MQ=255)                                                                                                     gcCCGCCACGTAGGTAGCGGTGAAGGCGGTTACCAGCAGCTCGCCGCCCACCCGGAGCATCACGTCAACCGACGCCGAATCCGGATCGGCGAAGCTGCCCCAATCGGGGAACACCATCTGTGCGCAATAAGACACCACCAGAAATAGCa                                          <  1:69537/149‑1 (MQ=255)                                                                                                        cGCCACGTAGGTAGCGGTGAAGGCGGTTACCAGCAGCTCGCCGCCCACCCGGCGCATCACGTCAACCGACGCCGAATCCGGATCGGCGAAGCTGCCCCAATCGGGGAACACCATCTGTGCGCAATAAGACACCACCAGAAATAGCAGgc                                       >  3:86763/1‑149 (MQ=255)                                                                                                           cACGTAGGTAGCGGTGAAGGCGGTTACCAGCAGCTCGCCGCCCACCCGGCGCATCACGTCAACCGACGCCGAATCCGGATCGGCGAAGCTGCCCCAATCGGGGAACACCATCTGTGCGCAATAAGACACCACCAGAAATAGCAGgccgc                                    <  6:104416/149‑1 (MQ=255)                                                                                                                   tagCGGTGAAGGCGGTTACCAGCAGCTCGCCGCCCACCCGGCGCATCACGTCAACCGACGCCGAATCCGGATCGGCGAAGCTGCCCCAATCGGGGAACACCATCTGTGCGCAATAAGACACCACCAGAAATAGCAGGCCGCCGATCAAc                            <  3:94521/149‑1 (MQ=255)                                                                                                                   tagCGGTGAAGGCGGTTACCAGCAGCTCGCCGCCCACCCGGCGCATCACGTCAACCGACGCCGAATCCGGATCGGCGAAGCTGCCCCAATCGGGGAACACCATCTGTGCGCAATAAGACACCACCAGAAATAGCAGGCCGCCGATCAAc                            <  6:253928/149‑1 (MQ=255)                                                                                                                   tagCGGTGAAGGCGGTTACCAGCAGCTCGCCGCCCACCCGGCGCATCACGTCAACCGACGCCGAATCCGGATCGGCGAAGCTGCCCCAATCGGGGAACACCATCTGTGCGCAATAAGACACCACCAGAAATAGCAGGCCGCCGATCAAc                            <  3:47327/149‑1 (MQ=255)                                                                                                                         tGAAGGCGGTTACCAGCAGCTCGCCGCCCACCCGGCGCATCAc                                                                                                                                <  6:330313/43‑1 (MQ=255)                                                                                                                                ggTTACCAGCAGCTCGCCGCCCACCCGGCGCATCACGTCAACCGACGCCGAATCCGGATCGGCGAAGCTGCCCCAATCGGGGAACACCATCTGTGCGCAATAAGACACCACCAGAAATAGCAGGCCGCCGATCAACGACACCGCCAGa                >  4:389834/1‑148 (MQ=255)                                                                                                                                  ttACCAGCAGCTCGCCGCCCACCCGGCGCATCACGTCAACCGACGCCGAATCCGGATCGGCGAAGCTGCCCCAATCGGGGAACACCATCTGTGCGCAATAAGACACCACCAGAAATAGCAGGCCGCCGATCAACGACACCGCCAGAATc             >  1:154549/1‑149 (MQ=255)                                                                                                                                      cagcagCTCGCCGCCCACCCGGCGCATCACGTCAACCGACGCCGAATCCGGATCGGCGAagctgctggtaaccgccttcaccgctacctacgtggcgggctgcttcgcctcggccatggtgtcccaggccagcgtgtcgcgcgtagtgt         <  4:199120‑M2/149‑91 (MQ=255)                                                                                                                                      cagcagCTCGCCGCCCACCCGGCGCATCACGTCAACCGACGCCGAATCCGGATCGGCGAAGCTGCCCCAATCGGGGAACACCATCTGTGCGCAATAAGACACCACCAGAAATAGCAGGCCGCCGATCAACGACACCGCCAGAATCGCCa         >  8:327925/1‑149 (MQ=255)                                                                                                                                      cagcagCTCGCCGCCCACCCGGCGCATCACGTCAACCGACGCCGAATCCGGATCGGCGAAGCTGCCCCAATCGGGGAACACCATCTGTGCGCAATAAGACACCACCAGAAATAGCAGGCCGCCGATCAACGACACCGCCAGAATCGCCa         >  1:363701/1‑149 (MQ=255)                                                                                                                                      cagcagCTCGCCGCCCACCCGGCGCATCACGTCAACCGACGCCGAATCCGGATCGGCGAAGCTGCCCCAATCGGGGAACACCATCTGTGCGCAATAAGACACCACCAGAAATAGCAGGCCGCCGATCAACGACACCGCCAGAATCGCCa         >  4:137241/1‑149 (MQ=255)                                                                                                                                      cagcagCTCGCCGCCCACCCGGCGCATCACGTCAACCGACGCCGAATCCGGATCGGCGAAGCTGCCCCAATCGGGGAACACCATCTGTGCGCAATAAGACACCACCAGAAATAGCAGGCCGCCGATCAACGACACCGCCAGAAGCGCCa         >  1:375395/1‑149 (MQ=255)                                                                                                                                        gcagcTCGCCGCCCACCCGGCGCATCACGTCAACCGACGCCGAATCCGGATCGGCGAagctgctggtaaccgccttcaccgctacctacgtggcgggctgcttcgcctcggccatggtgtcccaggccagcgtgtcgcgcgtactgttc       <  7:196537‑M2/149‑93 (MQ=255)                                                                                                                                        gcagcTCGCCGCCCACCCGGCGCATCACGTCAACCGACGCCGAATCCGGATCGGCGAagctgctggtaaccgccttcaccgctacctacgtggcgggctgcttcgcctcggccatggtgtcccaggccagcgtgtcgcgcgtactgttc       <  1:209312‑M2/149‑93 (MQ=255)                                                                                                                                         cagcTCGCCGCCCACCCGGCGCATCACGTCAACCGACGCCGAATCCGGATCGGCGAAGCTGCCCCAATCGGGGAACACCATCTGTGCGCAATAAGACACCACCAGAAATAGCAGGCCGCCGATCAACGACACCGCCAGAATCGCCACgg      <  1:254285/149‑1 (MQ=255)                                                                                                                                         cagcTCGCCGCCCACCCGGCGCATCACGTCAACCGACGCCGAATCCGGATCGGCGAAGCTGCCCCAATCGGGGAACACCATCTGTGCGCAATAAGACACCACCAGAAATAGCAGGCCGCCGATCAACGACACCGCCAGAATCGCCACgg      <  4:86763/149‑1 (MQ=255)                                                                                                                                            cTtcgccgatccggattcggcgtcggttgacgtgatgcgccgggtgggcggcgagctgctggtaaccgccttcaccgctacctacgtggcgggctgcttcgcctcggccatggtgtcccaggccagcgtgtcgcgcgtactgttcgcca   <  7:21064‑M1/149‑148 (MQ=255)                                                                                                                                             tCGCCGCCCACCCGGCGCATCACGTCAACCGACGCCGAATCCGGATCGGCGAAGCTGCCCCAATCGGGGAACACCATCTGTGCGCAATAAGACACCACCAGAAATAGCAGGCCGCCGATCAACGACACCGCCAGAATCGCCACGGGAAt  >  6:307748/1‑149 (MQ=255)                                                                                                                                             |                                                                                                                                                     TCACCAACTGGCCGAATGCCCGTGGCAATGCGCCGTCGCGGCCCATGGCGAACAGTACGCGCGACACGCTGGCCTGGGACACCATGGCCGAGGCGAAGCAGCCCGCCACGTAGGTAGCGGTGAAGGCGGTTACCAGCAGCTCGCCGCCCACCCGGCGCATCACGTCAACCGACGCCGAATCCGGATCGGCGAAGCTGCCCCAATCGGGGAACACCATCTGTGCGCAATAAGACACCACCAGAAATAGCAGGCCGCCGATCAACGACACCGCCAGAATCGCCACGGGAAT  >  NC_002947/2953480‑2953768

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.