New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2953620	39 (0.610)	5 (0.080)	4/254	NT	11.3%	coding (878/1383 nt)	PP_2586	putative amino acid transporter
	?	NC_002947	= 2953671	41 (0.680)					coding (827/1383 nt)	PP_2586	putative amino acid transporter

TGGCGAACAGTACGCGCGACACGCTGGCCTGGGACACCATGGCCGAGGCGAAGCAGCCCGCCACGTAGGTAGCGGTGAAGGCGGTTACCAGCAGCTCGCCGCCCACCCGGCGCATCACGTCAACCGACGCCGAATCCGGA‑TCGGCGAAGCTGCCCCAATCGGGGAACACCATCTGTGCGCAATAAGACACCACCAGAAATAGCAGGCCGCCGATCAACGACACCGCCAGAATCGCCACGGGAATGCGGTAGGTCGGGTTACTGGTTTCCTCAGCCATGGTCGACACCGCATCGAA  >  NC_002947/2953525‑2953819                                                                                                                                                    |                                                                                                                                                     tGGCGAACAGTACGCGCGACACGCTGGCCTGGGACACCATGGCCGAGGCGAAGCAGCCCGCCACGTAGGTAGCGGTGAAGGCGGTTACCAGCAGCTCGCCGCCCACCCGGCGCATCACGTCAACCGACGCCGAATCCGGA‑TCGGCGAag                                                                                                                                                    <  7:21064‑M2/149‑3 (MQ=255)           tACGCGCGACACGCTGGCCTGGGACACCATGGCCGAGGCGAAGCAGCCCGCCACGTAGGTAGCGGTGAAGGCGGTTACCAGCAGCTCGCCGCCCACCCGGCGCATCACGTCAACCGACGCCGAATCCGGA‑TCGGCGAAGCTGCCCCAAt                                                                                                                                          >  2:26953/1‑149 (MQ=255)                  gACACGCTGGCCTGGGACACCATGGCCGAGGCGAAGCAGCCCGCCACGTAGGTAGCGGTGAAGGCGGTTACCAGCAGCTCGCCGCCCACCCGGCGCATCACGTCAACCGACGCCGAATCCGGA‑TCGGCGAAGCTGCCCCAATCGGGGaa                                                                                                                                   <  4:261045/149‑1 (MQ=255)                   acacGCTGGCCTGGGACACCATGGCCGAGGCGAAGCAGCCCGCCACGTAGGTAGCGGTGAAGGCGGTTACCAGCAGCTCGCCGCCCACCCGGCGCATCACGTCAGCCGACGCCGAATCCGGA‑TCGGCGAAGCTGCCCCAATCGGGGAac                                                                                                                                  >  2:375053/1‑149 (MQ=255)                    cacGCTGGCCTGGGACACCATGGCCGAGGCGAAGCAGCCCGCCACGTAGGTAGCGGTGAAGGCGGTTACCAGCAGCTCGCCGCCCACCCGGCGCATCACGTCAACCGACGCCGAATCCGGA‑TCGGCGAAGCTGCCCCAATCGGGGAaca                                                                                                                                 <  3:169793/149‑1 (MQ=255)                           gCCTGGGACACCATGGCCGAGGCGAAGCAGCCCGCCACGTAGGTAGCGGTGAAGGCGGTTACCAGCAGCTCGCCGCCCACCCGGCGCATCACGTCAACCGACGCCGAATCCGGA‑TCGGCGAAGCTGCCCCAATCggg                                                                                                                                      >  4:24569/1‑137 (MQ=255)                           gCCTGGGACACCATGGCCGAGGCGAAGCAGCCCGCCACGTAGGTAGCGGTGAAGGCGGTTACCAGCAGCTCGCCGCCCACCCGGCGCATCACGTCAACCGACGCCGAATCCGGA‑TCGGCGAAGCTGCCCCAATCggg                                                                                                                                      <  3:24569/137‑1 (MQ=255)                                  acacCATGGCCGAGGCGAAGCAGCCCGCCACGTAGGTAGCGGTGAAGGCGGTTACCAGCAGCTCGCCGCCCACCCGGCGCATCACGTCAACCGACGCCGAATCCGGA‑TCGGCGAAGCTGCCCCAATCGGGGAACACCATCTGTGCGCaa                                                                                                                   >  4:47327/1‑149 (MQ=255)                                     ccATGGCCGAGGCGAAGCAGCCCGCCACGTAGGTAGCGGTGAAGGCGGTTACCAGCAGCTCGCCGCCCACCCGGCGCATCACGTCAACCGACGCCGAATCCGGA‑TCGGCGAAGCTGCCCCAATCGGGGAACACCATCTGTGCGCAATaa                                                                                                                <  4:151851/149‑1 (MQ=255)                                      cATGGCCGAGGCGAAGCAGCCCGCCACGTAGGTAGCGGTGAAGGCGGTTACCAGCAGCTCGCCGCCCACCCGGCGCATCACGTCAACCGACGCCGAATCCGGA‑TCGGCGAAGCTGCCCCAATCGGGGAACACCATCTGTGCGCAAt                                                                                                                  >  4:94521/1‑146 (MQ=255)                                      cATGGCCGAGGCGAAGCAGCCCGCCACGTAGGTAGCGGTGAAGGCGGTTACCAGCAGCTCGCCGCCCACCCGGCGCATCACGTCAACCGACGCCGAATCCGGA‑TCGGCGAAGCTGCCCCAATCGGGGAACACCATCTGTGCGCAAt                                                                                                                  >  2:254285/1‑146 (MQ=255)                                        tGGCCGAGGCGAAGCAGCCCGCCACGTAGGTAGCGGTGAAGGCGGTTACCAGCAGCTCGCCGCCCACCCGGCGCATCACGTCAACCGACGCCGAATCCGGA‑TCGGCGAAGCTGCCCCAATCGGGGAACACCATCTGTGCGCAATAAGac                                                                                                             <  8:21064/149‑1 (MQ=255)                                             gAGGCGAAGCAGCCCGCCACGTAGGTAGCGGTGAAGGCGGTTACCAGCAGCTCGCCGCCCACCCGGCGCATCACGTCAACCGACGCCGAATCCGGA‑TCGGCGAAGCTGCCCCAATCGGGGAACACCATCTGTGCGCAATAAGAcaccac                                                                                                        <  4:355558/149‑1 (MQ=255)                                                  gAAGCAGCCCGCCACGTAGGTAGCGGTGAAGGCGGTTACCAGCAGCTCGCCGCCCACCCGGCGCATCACGTCAACCGACGCCGAATCCGGA‑TCGGCGAAGCTGCCCCAATCGGGGAACACCATCTGTGCGCAATAAGACACCACCAGa                                                                                                    >  1:84195/1‑148 (MQ=255)                                                  gAAGCAGCCCGCCACGTAGGTAGCGGTGAAGGCGGTTACCAGCAGCTCGCCGCCCACCCGGAGCATCACGTCAACCGACGCCGAATCCGGA‑TCGGCGAAGCTGCCCCAATCGGGGAACACCATCTGTGCGCAATAAGACACCACCAGa                                                                                                    >  2:69537/1‑148 (MQ=255)                                                        gcCCGCCACGTAGGTAGCGGTGAAGGCGGTTACCAGCAGCTCGCCGCCCACCCGGCGCATCACGTCAACCGACGCCGCATCCGGA‑GCGGCGAAGCTGCCCCAATCgg                                                                                                                                       >  6:311615/1‑107 (MQ=255)                                                        gcCCGCCACGTAGGTAGCGGTGAAGGCGGTTACCAGCAGCTCGCCGCCCACCCGGAGCATCACGTCAACCGACGCCGAATCCGGA‑TCGGCGAAGCTGCCCCAATCGGGGAACACCATCTGTGCGCAATAAGACACCACCAGAAATAGCa                                                                                             <  1:69537/149‑1 (MQ=255)                                                           cGCCACGTAGGTAGCGGTGAAGGCGGTTACCAGCAGCTCGCCGCCCACCCGGCGCATCACGTCAACCGACGCCGAATCCGGA‑TCGGCGAAGCTGCCCCAATCGGGGAACACCATCTGTGCGCAATAAGACACCACCAGAAATAGCAGgc                                                                                          >  3:86763/1‑149 (MQ=255)                                                              cACGTAGGTAGCGGTGAAGGCGGTTACCAGCAGCTCGCCGCCCACCCGGCGCATCACGTCAACCGACGCCGAATCCGGA‑TCGGCGAAGCTGCCCCAATCGGGGAACACCATCTGTGCGCAATAAGACACCACCAGAAATAGCAGgccgc                                                                                       <  6:104416/149‑1 (MQ=255)                                                                      tagCGGTGAAGGCGGTTACCAGCAGCTCGCCGCCCACCCGGCGCATCACGTCAACCGACGCCGAATCCGGA‑TCGGCGAAGCTGCCCCAATCGGGGAACACCATCTGTGCGCAATAAGACACCACCAGAAATAGCAGGCCGCCGATCAAc                                                                               <  6:253928/149‑1 (MQ=255)                                                                      tagCGGTGAAGGCGGTTACCAGCAGCTCGCCGCCCACCCGGCGCATCACGTCAACCGACGCCGAATCCGGA‑TCGGCGAAGCTGCCCCAATCGGGGAACACCATCTGTGCGCAATAAGACACCACCAGAAATAGCAGGCCGCCGATCAAc                                                                               <  3:94521/149‑1 (MQ=255)                                                                      tagCGGTGAAGGCGGTTACCAGCAGCTCGCCGCCCACCCGGCGCATCACGTCAACCGACGCCGAATCCGGA‑TCGGCGAAGCTGCCCCAATCGGGGAACACCATCTGTGCGCAATAAGACACCACCAGAAATAGCAGGCCGCCGATCAAc                                                                               <  3:47327/149‑1 (MQ=255)                                                                                   ggTTACCAGCAGCTCGCCGCCCACCCGGCGCATCACGTCAACCGACGCCGAATCCGGA‑TCGGCGAAGCTGCCCCAATCGGGGAACACCATCTGTGCGCAATAAGACACCACCAGAAATAGCAGGCCGCCGATCAACGACACCGCCAGa                                                                   >  4:389834/1‑148 (MQ=255)                                                                                     ttACCAGCAGCTCGCCGCCCACCCGGCGCATCACGTCAACCGACGCCGAATCCGGA‑TCGGCGAAGCTGCCCCAATCGGGGAACACCATCTGTGCGCAATAAGACACCACCAGAAATAGCAGGCCGCCGATCAACGACACCGCCAGAATc                                                                >  1:154549/1‑149 (MQ=255)                                                                                         cagcagCTCGCCGCCCACCCGGCGCATCACGTCAACCGACGCCGAATCCGGA‑TCGGCGAagctgctggtaaccgccttcaccgctacctacgtggcgggctgcttcgcctcggccatggtgtcccaggccagcgtgtcgcgcgtagtgt                                                            <  4:199120‑M2/149‑91 (MQ=255)                                                                                         cagcagCTCGCCGCCCACCCGGCGCATCACGTCAACCGACGCCGAATCCGGA‑TCGGCGAAGCTGCCCCAATCGGGGAACACCATCTGTGCGCAATAAGACACCACCAGAAATAGCAGGCCGCCGATCAACGACACCGCCAGAATCGCCa                                                            >  4:137241/1‑149 (MQ=255)                                                                                         cagcagCTCGCCGCCCACCCGGCGCATCACGTCAACCGACGCCGAATCCGGA‑TCGGCGAAGCTGCCCCAATCGGGGAACACCATCTGTGCGCAATAAGACACCACCAGAAATAGCAGGCCGCCGATCAACGACACCGCCAGAATCGCCa                                                            >  1:363701/1‑149 (MQ=255)                                                                                         cagcagCTCGCCGCCCACCCGGCGCATCACGTCAACCGACGCCGAATCCGGA‑TCGGCGAAGCTGCCCCAATCGGGGAACACCATCTGTGCGCAATAAGACACCACCAGAAATAGCAGGCCGCCGATCAACGACACCGCCAGAATCGCCa                                                            >  8:327925/1‑149 (MQ=255)                                                                                         cagcagCTCGCCGCCCACCCGGCGCATCACGTCAACCGACGCCGAATCCGGA‑TCGGCGAAGCTGCCCCAATCGGGGAACACCATCTGTGCGCAATAAGACACCACCAGAAATAGCAGGCCGCCGATCAACGACACCGCCAGAAGCGCCa                                                            >  1:375395/1‑149 (MQ=255)                                                                                           gcagcTCGCCGCCCACCCGGCGCATCACGTCAACCGACGCCGAATCCGGA‑TCGGCGAagctgctggtaaccgccttcaccgctacctacgtggcgggctgcttcgcctcggccatggtgtcccaggccagcgtgtcgcgcgtactgttc                                                          <  7:196537‑M2/149‑93 (MQ=255)                                                                                           gcagcTCGCCGCCCACCCGGCGCATCACGTCAACCGACGCCGAATCCGGA‑TCGGCGAagctgctggtaaccgccttcaccgctacctacgtggcgggctgcttcgcctcggccatggtgtcccaggccagcgtgtcgcgcgtactgttc                                                          <  1:209312‑M2/149‑93 (MQ=255)                                                                                            cagcTCGCCGCCCACCCGGCGCATCACGTCAACCGACGCCGAATCCGGA‑TCGGCGAAGCTGCCCCAATCGGGGAACACCATCTGTGCGCAATAAGACACCACCAGAAATAGCAGGCCGCCGATCAACGACACCGCCAGAATCGCCACgg                                                         <  4:86763/149‑1 (MQ=255)                                                                                            cagcTCGCCGCCCACCCGGCGCATCACGTCAACCGACGCCGAATCCGGA‑TCGGCGAAGCTGCCCCAATCGGGGAACACCATCTGTGCGCAATAAGACACCACCAGAAATAGCAGGCCGCCGATCAACGACACCGCCAGAATCGCCACgg                                                         <  1:254285/149‑1 (MQ=255)                                                                                                tCGCCGCCCACCCGGCGCATCACGTCAACCGACGCCGAATCCGGA‑TCGGCGAAGCTGCCCCAATCGGGGAACACCATCTGTGCGCAATAAGACACCACCAGAAATAGCAGGCCGCCGATCAACGACACCGCCAGAATCGCCACGGGAAt                                                     >  6:307748/1‑149 (MQ=255)                                                                                                      cccACCCGGCGCATCACGTCAACCGACGCCGAATCCGGA‑TCGGCGAAGCTGCCCCAATCGGGGAACACCATCTGTGCGCAATAAGACACCACCAGAAATAGCAGGCCGCCGATCAACGACACCGCCAGAATCGCCACGGGAATGCgg                                                 >  5:321705/1‑147 (MQ=255)                                                                                                          cccGGCGCATCACGTCAACCGACGCCGAATCCGGA‑TCGGCGAAGCTGCCCCAATCGGGGAACACCATCTGTGCGCAATAAGACACCACCAGAAATAGCAGGCCGCCGATCAACGACACCGCCAGAATCGCCACGGGAATGCGGTAGGTc                                           >  8:87151/1‑149 (MQ=255)                                                                                                           ccGGCGCATCACGTCAACCGACGCCGAATCCGGA‑TCGGCGAagctgctggtaaccgccttcaccgctacctacgtggcgggctgcttcgcctcggccatggtgtcccaggccagcgtgtcgcgcgtactgttcgccatgggccgcgacg                                          >  2:209312‑M2/1‑41 (MQ=255)                                                                                                            cGGCGCATCACGTCAACCGACGCCGAATCCGGA‑TCGGCGAAGCTGCCCCAATCGGGGAACACCATCTGTGCGCAATAAGACACCACCAGAAATAGCAGGCCGCCGATCAACGACACCGCCAGAATCGCCACGGGAATGCGGTAGGTCgg                                         <  1:26953/149‑1 (MQ=255)                                                                                                                   tCACGTCAACCGACGCCGAATCCGGA‑TCGGCGAAGCTGCCCCAATCGGGGAACACCATCTGTGCGCAATACGACACCACCAGAAATAGCAGGCCGCCGATCAACGACACCGCCAGAATCGCCACGGGAATGCGGTAGGTCGGGTTACt                                   >  6:115878/1‑148 (MQ=255)                                                                                                                   tCACGTCAACCGACGCCGAATCCGGA‑TCGGCGAAGCTGCCCCAATCGGGGAACACCATCTGTGCGCAATACGACACCACCAGAAATAGCAGGCCGCCGATCAACGACACCGCCAGAATCGCCACGGGAATGCGGTAGGTCGGGTTACt                                   <  5:115878/148‑1 (MQ=255)                                                                                                                       gTCAACCGACGCCGAATCCGGA‑TCGGCGAAGCTGCCCCAATCGGGGAACACCATCTGTGCGCAATAAGACACCACCAGAAATAGCAGGCCGCCGATCAACGACACCGCCAGAATCGCCACGGGAATGCGGTAGGTCGGGTTACTGGttt                              >  2:51530/1‑149 (MQ=255)                                                                                                                         cAACCGACGCCGAATCCGGA‑TCGGCGAAGCTGCCCCAATCGGGGAACACCATCTGTGCGCAATAAGACACCACCAGAAATAGCAGGCCGCCGATCAACGACACCGCCAGAATCGCCACGGGAATGCGGTAGGTCGGGt                                       >  2:381732/1‑138 (MQ=255)                                                                                                                         cAACCGACGCCGAATCCGGA‑TCGGCGAAGCTGCCCCAATCGGGGAACACCATCTGTGCGCAATAAGACACCACCAGAAATAGCAGGCCGCCGATCAACGACACCGCCAGAATCGCCACGGGAATGCGGTAGGTCGGGt                                       <  1:381732/138‑1 (MQ=255)                                                                                                                              ttcGCCG‑ATCCGGATTCGGCGAAGCTGCCCCAATCGGGGAACACCATCTGTGCGCAATAAGACACCACCAGAAATAGCAGGCCGCCGATCAACGACACCGCCAGAATCGCCACgg                                                         >  7:282172/3‑115 (MQ=255)                                                                                                                              ttcGCCG‑ATCCGGATTCGGCGAAGCTGCCCCAATCGGGGAACACCATCTGTGCGCAATAAGACACCACCAGAAATAGCAGGCCGCCGATCAACGACACCGCCAGAATCGCCACgg                                                         <  8:282172/113‑1 (MQ=255)                                                                                                                                          ggA‑TCGGCGAagctgctggtaaccgccttcaccgctacctacgtgtcgggctgcttcgcctcggccatggtgtcccaggccagcgtgtcgcgcgtactgttcgccatgggccgcgacggcgcattgccacgggcattcggccagttggt           >  8:196537‑M2/1‑10 (MQ=255)                                                                                                                                           gA‑TCGGCGAAGCTGCCCCAATCGGGGAACACCATCTGTGCGCAATAAGACACCACCAGAAATAGCAGGCCGCCGATCAACGACACCGCCAGAATCGCCACGGGAATGCGGTAGGTCGGGTTACTGGTTTCCTCAGCCATGGTCGACAcc          >  1:357465/1‑149 (MQ=255)                                                                                                                                                 gCGAAGCTGCCCCAATCGGGGAACACCATCTGTGCGCAATAAGACACCACCAGAAATAGCAGGCCGCCGATCAACGACACCGCCAGAATCGCCACGGGAATGCGGTAGGTCGGGTTACTGGTTTCCTCAGCCATGGTCGACACCGCATc     <  1:375053/149‑1 (MQ=255)                                                                                                                                                    aaGCTGCCCCAATCGGGGAACACCATCTGTGCGCAATAAGACACCACCAGAAATAGCAGGCCGCCGATCAACGACACCGCCAGAATCGCCACGGGAATGCGGTAGGTCGGGTTACTGGTTTCCTCAGCCATGGTCGACACCGCATCGaa  <  2:84195/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                     TGGCGAACAGTACGCGCGACACGCTGGCCTGGGACACCATGGCCGAGGCGAAGCAGCCCGCCACGTAGGTAGCGGTGAAGGCGGTTACCAGCAGCTCGCCGCCCACCCGGCGCATCACGTCAACCGACGCCGAATCCGGA‑TCGGCGAAGCTGCCCCAATCGGGGAACACCATCTGTGCGCAATAAGACACCACCAGAAATAGCAGGCCGCCGATCAACGACACCGCCAGAATCGCCACGGGAATGCGGTAGGTCGGGTTACTGGTTTCCTCAGCCATGGTCGACACCGCATCGAA  >  NC_002947/2953525‑2953819

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.