New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4710018 =	48 (0.760)	5 (0.080)	4/260	NT	9.8%	coding (118/459 nt)	sixA	phosphohistidine phosphatase SixA
	?	NC_002947	4710053 =	45 (0.720)					coding (83/459 nt)	sixA	phosphohistidine phosphatase SixA

GCCGATGACCTGCTGCACATCACCCTCGGGCGTCAGCCAGGGCACGGTGCGCACCGGTTCGGCGAAGCCCAGGGTGTCATGCACCAGCGCGGCGGTCTGCTGGGCGCGTACGTAAGGGCTGGCAACAATCGCCTGCAATGGCTGCCCGATCAGGTAAGCCGCACTGTGCAGCACCTGCTCGCGACCATGGGCAGTCAACCGGCGCTCGGCATCCGTCTTGGCCCGCGGCTCAGCTTCACCGTGGCGCAGCACCCACAGCTTCACAGCTTGGGTTCCTCGTCACGCACCGGATGC  >  NC_002947/4709872‑4710165                                                                                                                                                   |                                                                                                                                                    aggtgaagcagcgcacgccgtggcaccggccgcgcatccggtgcgtgacgaggaacccaagctgtgaagctgtgggtgctgcgccacggtgaagctgagccgcgggccaagacggatgccgagcgccggttgactgcccatggtcgCGa                                                                                                                                                   >  6:206591‑M1/147‑149 (MQ=255)   cGATGACCTGCTGCACATCACCCTCGGGCGTCAGCCAGGGCACGGTGCGCACCGGTTCGGCGAAGCCCAGGGTGTCATGCACCAGCGCGGCGGTCTGCTGGGCGCGTACGTAAGGGCTGGCAACAATCGCCTGCAATGGCTGCCCGATc                                                                                                                                                 <  8:4278/149‑1 (MQ=255)    gATGACCTGCTGCACATCACCCTCGGGCGTCAGCCAGGGCACGGTGCGCACCGGTTCGGCGAAGCCCAGGGTGTCATGCACCAGCGCGGCGGTCTGCTGGGCGCGTACGTAAGGGCTGGCAACAATCGCCTGCAATGGCTGCCCGATCa                                                                                                                                                <  5:333342/149‑1 (MQ=255)    gATGACCTGCTGCACATCACCCTCGGGCGTCAGCCAGGGCACGGTGCGCACCGGTTCGGCGAAGCCCAGGGTGTCATGCACCAGCGCGGCGGTCTGCTGGGCGCGTACGTAAGGGCTGGCAACAATCGCCTGCAATGGCTGCCCGATCa                                                                                                                                                <  2:28539/149‑1 (MQ=255)     aTGACCTGCTGCACATCACCCTCGGGCGTCAGCCAGGGCACGGTGCGCACCGGTTCGGCGAAGCCCAGGGTGTCATGCACCAGCGCGGCGGTCTGCTGGGCGCGTACGTAAGGGCTGGCAACAATCGCCTGCAATGGCTGCCCGATCAg                                                                                                                                               <  7:280407/149‑1 (MQ=255)        aCCTGCTGCACATCACCCTCGGGCGTCAGCCAGGGCACGGTGCGCACCGGTTCGGCGAAGCCCAGGGTGTCATGCACCAGCGCGGCGGTCTGCTGGGCGCGTACGTAAGGGCTGGCAACAATCGCCTGCAATGGCTGCCCGATCAGGt                                                                                                                                             <  8:153565/148‑1 (MQ=255)         ccTGCTGCACATCACCCTCGGGCGTCAGCCAGGGCACGGTGCGCACCGGTTCGGCGAAGCCCAGGGTGTCATGCACCAGCGCGGCGATCTGCTGGGCGCGTACGTAAGGGCTGGCAACAATCGCCTGCAATGGCTGCCCGATCAGGTaa                                                                                                                                           <  7:296578/149‑1 (MQ=255)               gcACATCACCCTCGGGCGTCAGCCAGGGCACGGTGCGCACCGGTTCGGCGAAGCCCAGGGTGTCATGCACCAGCGCGGCGGTCTGCTGGGCGCGTACGTAAGGGCTGGCAACAATCGCCTGCAATGGCTGCCCGATCAGGTAAGCCGCa                                                                                                                                     >  4:214775/1‑149 (MQ=255)                cacaTCACCCTCGGGCGTCAGCCAGGGCACGGTGCGCACCGGTTCGGCGAAGCCCAGGGTGTCATGCACCAGCGCGGCGGTCTGCTGGGCGCGTACGTAAGGGCTGGCAACAATCGCCTGCAATGGCGGCCCGATCAGGTAAGCCGCAc                                                                                                                                    >  8:277617/1‑149 (MQ=255)                  caTCACCCTCGGGCGTCAGCCAGGGCACGGTGCGCACCGGTTCGGCGAAGCCCAGGGTGTCATGCACCAGCGCGGCGGTCTGCTGGGCGCGTACGTAAGGGCTGGCAACAATCGCCTGCAATGGCTGCCCGATCAGGTAAGCCGCACtg                                                                                                                                  <  3:36944/149‑1 (MQ=255)                      aCCCTCGGGCGTCAGCCAGGGCACGGTGCGCACCGGTTCGGCGAAGCCCAGGGTGTCATGCACCAGCGCGGCGGTCTGCTGGGCGCGTACGTAAGGGCTGGCAACAATCGCCTGCAATGGCTGCCCGATCAGGTAAGCCGCACtgtg                                                                                                                                >  3:221646/1‑147 (MQ=255)                      aCCCTCGGGCGTCAGCCAGGGCACGGTGCGCACCGGTTCGGCGAAGCCCAGGGTGTCATGCACCAGCGCGGCGGTCTGCTGGGCGCGTACGTAAGGGCTGGCAACAATCGCCTGCAATGGCTGCCCGATCAGGTAAGCCGCACTGTgc                                                                                                                               <  2:110470/148‑1 (MQ=255)                            gggCGTCAGCCAGGGCACGGTGCGCACCGGTTCGGCGAAGCCCAGGGTGTCATGCACCAGCGCGGCGGTCTGCTGGGCGCGTACGTAAGGGCTGGCAACAATCGCCTGCAATGGCTGCCCGATCAg                                                                                                                                               >  6:242721/1‑126 (MQ=255)                            gggCGTCAGCCAGGGCACGGTGCGCACCGGTTCGGCGAAGCCCAGGGTGTCATGCACCAGCGCGGCGGTCTGCTGGGCGCGTACGTAAGGGCTGGCAACAATCGCCTGCAATGGCTGCCCGATCAg                                                                                                                                               <  5:242721/126‑1 (MQ=255)                                gTCAGCCAGGGCACGGTGCGCACCGGTTCGGCGAAGCCCAGGGTGTCATGCACCAGCGCGGCGGTCTGCTGGGCGCGTACGTAAGGGCTGGCAACAATCGCCTGCAATGGCTGCCCGATCAGGTAAGCCGCACTGTGCAGCACCTGCTc                                                                                                                    >  1:248550/1‑149 (MQ=255)                                     tccggtgcgtgacgaggaacccaagctgtgaagctgtgggggctgcgccacggtgaagctgagccgcgggccaagacggatgccgagcgccggttgactgcccatggtcgCGATCAGGTAAGCCGCACTGTGCAGCACCTGCTCGCGAc                                                                                                               >  4:224386‑M1/111‑149 (MQ=255)                                     ccAGGGCACGGTGCGCACCGGATCGGCGAAGCCCAGGGTGTCATTAACCAGCGCGGCGGTCTGCTGGGCGCCTACGTAAGGGCTGGCAACAATCGCCTGCAATGGCTGCCCGATCAGGTAAGCCGCACTGTGCAGCACCTGCTCGCGAc                                                                                                               >  5:349975/1‑149 (MQ=255)                                      ccggtgcgtgacgaggaacccaagctgtgaagctgtgggtgctgcgccacggtgaagctgagccgcgggccaagacggatgccgagcgccggttgactgcccatggtcgCGATCAGGTAAGCCGCACTGTGCAGCACCTGCTc                                                                                                                    >  1:390872‑M1/110‑143 (MQ=255)                                      ccggtgcgtgacgaggaacccaagctgtgaagctgtgggtgctgcgccacggtgaagctgagccgcgggccaagacggatgccgagcgccggttgactgcccatggtcgCGATCAGGTAAGCCGCACTGTGCAGCACCTGCTc                                                                                                                    <  2:390872‑M1/34‑1 (MQ=255)                                      cAGGGCACGGTGCGCACCGGTTCGGCGAAGCCCAGGGTGTCATGCACCAGCGAGGCGGTCTGCTGGGCGCGAACGTAAGGGCTGGCAACAATCGCCTGCAATGGCTGCCCGATCAGGTAAGCCACACTGTGCAGCACCTGCTCGCGAc                                                                                                               >  2:125926/1‑148 (MQ=255)                                               gTGCGCACCGGTTCGGCGAAGCCCAGGGTGTCATGCACCAGCGCGGCGGTCTGCTGGGCGCGTACGTAAGGGCTGGCAACAATCGCCTGCAATGGCTGCCCGATCAGGTAAGCCGCACTGTGCAGCACCTGCTCGCGACCATGGGCAGt                                                                                                     <  3:214775/149‑1 (MQ=255)                                                tGCGCACCGGTTCGGCGAAGCCCAGGGTGTCATGCACCAGCGCGGCGGTCTGCTGGGCGCGTACGTAAGGGCTGGCAACAATCGCCTGCAATGGCTGCCCGATCAGGTAAGCCGCACTGTGCAGCACCTGCTCGCGACCATGGGCAGTc                                                                                                    <  2:248550/149‑1 (MQ=255)                                                   gcACAGGTTCGGCGAAGCCCAGGGTGTCATGCACCAGCGCGGCGGTCTGCTGGGCGCGTACGTAAGGGCTGGCAACAATCGCCTGCAATGGCGGCCCGATCAGGTAAGCCGCACTGTGCAGCACCTGCTCGCGACCATGGGCAGTCaat                                                                                                 <  2:177069/149‑2 (MQ=255)                                                     aCCGGTTCGGCGAAGCCCAGGGTGTCATGCACCAGCGCGGCGGTCTGCTGGGCGCGTACGTAAGGGCTGGCAACAATCGCCTGCAATGGCTGCCCGATCAGGTAAGCCGCACTGTGCAGCACCTGCTCGCGACCATGGGCAGTCAACCg                                                                                               >  3:353431/1‑149 (MQ=255)                                                       cGGTTCGGCGAAGCCCAGGGTGTCATGCACCAGCGCGGCGGTCTGCTGGGCGCGTACGTAAGGGCTGGCAACAATCGCCTGCAATGGCTGCCCGATCAGGTAAGCCGCACTGTGCAGCACCTGCTCGCGACCATGGTCAGTCAACCGgc                                                                                             <  6:355708/149‑1 (MQ=255)                                                         gTTCGGCGAAGCCCAGTGTGTCATGCACCAGCGCGGCGGTCTGCTGGGCGCGTACGTAAGGGCTGGCAACAATCGCCTGCAATGGCTGCCCGATCAGGTAAGCCGCACtgtg                                                                                                                                <  4:303851/112‑1 (MQ=255)                                                         gTTCGGCGAAGCCCAGGGTGTCATGCACCAGCGCGGCGGTCTGCTGGGCGCGTACGTAAGGGCTGGCAACAATCGCCTGCAATGGCTGCCCGATCAGGTAAGCCGCACtgtg                                                                                                                                >  3:303851/1‑112 (MQ=255)                                                           aagctgtgaagctgtgggtgctgcgccacggtgaagctgagccgcgggccaagacggatgccgagcgccggttgactgcccatggtcgCGATCAGGTAAGCCGCACTGTGCAGCACCTGCTc                                                                                                                    <  5:51237‑M1/34‑1 (MQ=255)                                                           aagctgtgaagctgtgggtgctgcgccacggtgaagctgagccgcgggccaagacggatgccgagcgccggttgactgcccatggtcgCGATCAGGTAAGCCGCACTGTGCAGCACCTGCTc                                                                                                                    >  6:51237‑M1/89‑122 (MQ=255)                                                                       aGGGTGTCATGCACCAGCGCGGCGGTCTGCTGGGCGCGTACGTAAGGGCTGGCAACAATCGCCTGCAATGGCTGCCCGATCAGGTAAGCCGCACTGTGCAGCACCTGCTCGCGACCATgg                                                                                                          >  6:182305/1‑120 (MQ=255)                                                                       aGGGTGTCATGCACCAGCGCGGCGGTCTGCTGGGCGCGTACGTAAGGGCTGGCAACAATCGCCTGCAATGGCTGCCCGATCAGGTAAGCCGCACTGTGCAGCACCTGCTCGCGACCATgg                                                                                                          <  5:182305/120‑1 (MQ=255)                                                                           tgtCATGCACCAGCGCGGCGGTCTGCTGGGCGCGTACGTAAGGGCTGGCAACAATCGCCTGCAATGGCTGCCCGATCAg                                                                                                                                               <  6:129000/79‑1 (MQ=255)                                                                           tgtCATGCACCAGCGCGGCGGTCTGCTGGGCGCGTACGTAAGGGCTGGCAACAATCGCCTGCAATGGCTGCCCGATCAg                                                                                                                                               >  5:129000/1‑79 (MQ=255)                                                                           tgtCATGCACCAGCGCGGCGGTCTGCTGGGCGCGTACGTAAGGGCTGGCAACAATCGCCCGCAATGGCTGCCCGATCAGGTAAGCCGCACTGTGCAGCACCTGCTCGCGACCATGGGCAGTCAACCGGCGCTCGGCATCCGTCTTGGcc                                                                         >  1:91349/1‑149 (MQ=255)                                                                               aTGCACCAGCGCGGCGGTCTGCTGGGCGCGTACGTAAGGGCTGGCAACAATCGCCTGCAATGGCTGCCCGATCAGGTAAGCCGCACTGTGCAGCACCTGCTCGCGACCATGGGCAGTCAACCGGCGCTCGGCATCCGTCTTGGCCcgcg                                                                     >  2:393622/1‑149 (MQ=255)                                                                                 gCACCAGCGCGGCGGTCTGCTGGGCGCGTACGTAAGGGCTGGCAACAATCGCCTGCAATGGCTGCCCGATCAGGTAAGCCGCACTGTGCAGCACCTGCTCGCGACCATGGGCAGTCAACCGGCGCTCGGCATCCGTCTTGGCCCGCGGc                                                                   >  5:103215/1‑149 (MQ=255)                                                                                   aCCAGCGCGGCGGTCTGCTGGGCGCGTACGTAAGGGCTGGCAACAATCGCCTGCAATGGCTGCCCGATCAGGTAAGCCGCACTGTGCAGCACCTGCTCGCGACCATGGGCAGTCAAcc                                                                                                <  7:167170/118‑1 (MQ=255)                                                                                   aCCAGCGCGGCGGTCTGCTGGGCGCGTACGTAAGGGCTGGCAACAATCGCCTGCAATGGCTGCCCGATCAGGTAAGCCGCACTGTGCAGCACCTGCTCGCGACCATGGGCAGTCAAcc                                                                                                >  8:167170/1‑118 (MQ=255)                                                                                    cgaGCGCGGCGGTCTGCTGGTCGTGTACGTAAGGGCTGGGAACAATCGCCTGCAATTGCTGCCCGATCAGGTAAGCCGCACTGTGCAGCACCTGCTCGCGACCATGGGCAGTCAAGCGGCGCTGGGCATCCGTCTTGGGCCGCGGCTCa                                                                <  6:349975/147‑1 (MQ=255)                                                                                    ccAGCGCGGCTGTCTGCGGGGCGCGTACGTAAGGGCTGGCAACAATCGCCTGCAATGGCTGCCCGATCAGGTAAGCCGCACTGTGCAGCACCTGCTCGCGACCATGGGCAGTCAACCGGCGCTCGGCATCCGTCTTGGCCCGCGGCTCa                                                                <  4:221646/149‑1 (MQ=255)                                                                                             cggTCTGCTGGGCGCGTACGTAAGGGCTGGCAACAATCGCCTGCAATGGCTGCCCGATCAGGTAAGCCACACTGTGCAGCACCTGCTCGCGACCATGGGCAGTCAACCGGCGCTCGGCATCCGTCTTGGCCCGCGGCTCAGCTTCACCg                                                       <  1:125926/149‑1 (MQ=255)                                                                                                tCTGCTGGGCGCGTACGTAAGGGCTGGCAACAATCGCCTGCAATGGCTGCCCGATCAGGTAAGCCGCACTGTGCAGCACCTGCTCGCGACCATGGGCAGTCAACCGGCGCTCGGCATCCGTCTTGGCCCGCGACTCAGCTTCACCGTgg                                                    <  4:62783/149‑1 (MQ=255)                                                                                                     tgGGCGCGTACGTAAGGGCTGGCAACAATCGCCTGCAATGGCTGCCCGATCAGGTAAGCCGCACTGTGCAGCACCTGCTCGCGACCATGGGCAGTCAACCGGCGCTCGGCATCCGTCTTGGCCCGCGGCTCAGCTTCACCGTGGCgcag                                               >  6:214963/1‑149 (MQ=255)                                                                                                          gcgTACGTAAGGGCTGGCAACAATCGCCTGCAATGGCTGCCCGATCAGGTAAGCCGCACTGTGCAGCACCTGCTCGCGACCATGGGCAGTCAACCGGCGCTCGGCATCCGTCTTGGCCCGCGGCTCAGCTTCACCGTGGCGCAGCAcc                                           >  2:95845/1‑148 (MQ=255)                                                                                                            gtacgtaAGGGCTGGCAACAATCGCCTGCAATGGCTGCCCGATCAGGTAAGCCGCACTGTGCAGCTCCTGCTCGCGACCATGGGCAGTCAACCGGCACTCGGCATCCGTCTTGGCCCGCGGCTCAGCTTCACCGTGGCGCAGCACCca                                         >  2:303940/1‑148 (MQ=255)                                                                                                                     ggCTGGCAACAATCGCCTGCAATGGCTGCCCGATCAGGTAAGCCGCACTGTGCAGCACCTGCTCGCGACCATGGGCAGTCAACCGGCGCTCGGCATCCGTCTTGGCCCGCGGCTCAGCTTCACCGTGGCGCAGCACCcacagcttcaca                               <  1:393622/149‑1 (MQ=255)                                                                                                                           caacaaTCGCCTGCAATGGCTGCCCGATCAGGTAAGCCGCACTGTGCAGCACCTGCTCGCGACCATGGGCAGTCAACCGGCGCTCGGCATCCGTCTTGGCCCGCGGCTCAGCTTCACCGTGGCGCAGCACCCACAGCTTCACAGCTTgg                         >  5:400320/1‑149 (MQ=255)                                                                                                                           caacaaTCGCCTGCAATGGCTGCCCGATCAGGTAAGCCGCACTGTGCAGCACCTGCTCGCGACCATGGGCAGTCAACCGGCGCTCGGCATCCGTCTTGGCCCGCGGCTCAGCTTCACCGTGGCGCAGCACCCACAGCTTCACAGCTTgg                         <  3:336192/149‑1 (MQ=255)                                                                                                                                 tCGCCTGCAATGGCTGCCCGATCAGGTAAGCCGCACTGTGCAGCACCTGCTCGCGACCATGGGCAGTCAACCGGCGCTCGGCATCCGTCTTGGCCCGCGGCTCAGCTTCACCGTGGCGCAGCACCCACAGCTTCACAGCTTGGGTTCCt                   >  6:373627/1‑149 (MQ=255)                                                                                                                                   gCCTGCAATGGCTGCCCGATCAGGTAAGCCGCACTGTGCAGCACCTGCTCGCGACCATGGGCAGTCAACCGGCGCTCGGCATCCGTCTTGGCCCGCGGCTCAGCTTCACCGTGGCGCAGCACCCACAGCTTCACAGCTTGGGTTCCTCg                 >  1:40567/1‑149 (MQ=255)                                                                                                                                   gCCTGCAATGGCTGCCCGATCAGGTAAGCCGCACTGTGCAGCACCTGCTCGCGACCATGGGCAGTCAACCGGCGCTCGGCATCCGTCTTGGCCCGCGGCTCAGCTTCACCGTGGCGCAGCACCCACAGCTTCACAGCTTGGGTTCCTCg                 >  8:357021/1‑149 (MQ=255)                                                                                                                                    ccTGCTATGGCTGCCCGATCAGGTAAGCCGCACTGTGCAGCACCTGCTCGCGACCATGGGCAGTAAACCGGCGCTCGCCATCCGTCTTCGCCCGCGGCTCAGCTTCACCGTGGCGCAGAACCCACAGCTTCACAGCTTGGGTTcgtcgt                >  4:23307/1‑149 (MQ=255)                                                                                                                                        cAATGGCTGCCCGATCAGGTAAGCCGCACTGTGCAGCACCTGCTCGCGACCATGGGCAGTCAACCGGCGCTCGGCATCCGTCTTGGCCCGCGGCTCAGCTTCACCGTGGCGCAGCACCCACAGCTTCACAGCTTGGGTTCCTCGTCa              <  5:214963/147‑1 (MQ=255)                                                                                                                                         aaTGGCTGCCCGATCAGGTAAGCCGCACTGTGCAGCACCTGCTCGCGACCATGGGCAGTCAACCGGCGCTCGGCATCCGTCTTGGCCCGCGGCTCAGCTTCACCGTGGCGCAGCACCCACAGCTTCACAGCTTGGGTTCCTCGTCACGc           >  8:297522/1‑149 (MQ=255)                                                                                                                                          aTGGCTGCCCGATCAGGTAAGCCGCACTGTGCAGCACCTGCTCGCGACCATGGGCAGTCAACCGGCGCTCGGCATCCGTCTTGGCCCGCGGCTCAGCTTCACCGTGGCGCAGCACCCACAGCTTCACAGCTTGGGTTCCTCGTCACGCa          >  7:190825/1‑149 (MQ=255)                                                                                                                                                gCCCGATCAGGTGAGCCGCACTGTGCAGCACCTGCTCGCGACCATGGGCAGTCAACCGGCGCTCGGCATCCGTCTTGGCCCGCGGCTCAGCTTCACCGTGGCGCAGCACCCACAGCTTCACAGCTTGGGTTCCTCGTCACGCACCGGAt    >  6:210946/1‑149 (MQ=255)                                                                                                                                                  ccGATCAGGTAAGCCGCACTGTGCAGCACCTGCTCGCGACCATGGGCAGTCAACCGGCGCTCGGCATCCGTCTTGGCCCGCGGCTCAGCTTCACCGTGGCGCAGCACCCACAGCTTCACAGCTTGGGTTCCTCGTCACGCACCGGATgc  >  4:17713/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                                    GCCGATGACCTGCTGCACATCACCCTCGGGCGTCAGCCAGGGCACGGTGCGCACCGGTTCGGCGAAGCCCAGGGTGTCATGCACCAGCGCGGCGGTCTGCTGGGCGCGTACGTAAGGGCTGGCAACAATCGCCTGCAATGGCTGCCCGATCAGGTAAGCCGCACTGTGCAGCACCTGCTCGCGACCATGGGCAGTCAACCGGCGCTCGGCATCCGTCTTGGCCCGCGGCTCAGCTTCACCGTGGCGCAGCACCCACAGCTTCACAGCTTGGGTTCCTCGTCACGCACCGGATGC  >  NC_002947/4709872‑4710165

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.