New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4710018 =	48 (0.760)	5 (0.080)	4/260	NT	9.8%	coding (118/459 nt)	sixA	phosphohistidine phosphatase SixA
	?	NC_002947	4710053 =	45 (0.720)					coding (83/459 nt)	sixA	phosphohistidine phosphatase SixA

CCAGGGCACGGTGCGCACCGGTTCGGCGAAGCCCAGGGTGTCATGCACCAGCGCGGCGGTCTGCTGGGCGCGTACGTAAGGGCTGGCAACAATCGCCTGCAATGGCTGCCCGATCAGGTAAGCCGCACTGTGCAGCACCTGCTCGCGACCATGGGCAGTCAACCGGCGCTCGG‑CATCCGTCTTGGCCCGCGGCTCAGCTTCACCGTGGCGCAGCACCCACAGCTTCACAGCTTGGGTTCCTCGTCACGCACCGGATGCGCGGCCGGTGCCACGGCGTGCGCTGCTTCACCT  >  NC_002947/4709908‑4710198                                                                                                                                                  |                                                                                                                                                   tccggtgcgtgacgaggaacccaagctgtgaagctgtgggggctgcgccacggtgaagctgagccgcgggccaagacggatgccgagcgccggttgactgcccatggtcgCGATCAGGTAAGCCGCACTGTGCAGCACCTGCTCGCGAc                                                                                                                                                 >  4:224386‑M1/111‑149 (MQ=255) ccAGGGCACGGTGCGCACCGGATCGGCGAAGCCCAGGGTGTCATTAACCAGCGCGGCGGTCTGCTGGGCGCCTACGTAAGGGCTGGCAACAATCGCCTGCAATGGCTGCCCGATCAGGTAAGCCGCACTGTGCAGCACCTGCTCGCGAc                                                                                                                                                 >  5:349975/1‑149 (MQ=255)  cAGGGCACGGTGCGCACCGGTTCGGCGAAGCCCAGGGTGTCATGCACCAGCGAGGCGGTCTGCTGGGCGCGAACGTAAGGGCTGGCAACAATCGCCTGCAATGGCTGCCCGATCAGGTAAGCCACACTGTGCAGCACCTGCTCGCGAc                                                                                                                                                 >  2:125926/1‑148 (MQ=255)           gTGCGCACCGGTTCGGCGAAGCCCAGGGTGTCATGCACCAGCGCGGCGGTCTGCTGGGCGCGTACGTAAGGGCTGGCAACAATCGCCTGCAATGGCTGCCCGATCAGGTAAGCCGCACTGTGCAGCACCTGCTCGCGACCATGGGCAGt                                                                                                                                       <  3:214775/149‑1 (MQ=255)            tGCGCACCGGTTCGGCGAAGCCCAGGGTGTCATGCACCAGCGCGGCGGTCTGCTGGGCGCGTACGTAAGGGCTGGCAACAATCGCCTGCAATGGCTGCCCGATCAGGTAAGCCGCACTGTGCAGCACCTGCTCGCGACCATGGGCAGTc                                                                                                                                      <  2:248550/149‑1 (MQ=255)               gcACAGGTTCGGCGAAGCCCAGGGTGTCATGCACCAGCGCGGCGGTCTGCTGGGCGCGTACGTAAGGGCTGGCAACAATCGCCTGCAATGGCGGCCCGATCAGGTAAGCCGCACTGTGCAGCACCTGCTCGCGACCATGGGCAGTCaat                                                                                                                                   <  2:177069/149‑2 (MQ=255)                 aCCGGTTCGGCGAAGCCCAGGGTGTCATGCACCAGCGCGGCGGTCTGCTGGGCGCGTACGTAAGGGCTGGCAACAATCGCCTGCAATGGCTGCCCGATCAGGTAAGCCGCACTGTGCAGCACCTGCTCGCGACCATGGGCAGTCAACCg                                                                                                                                 >  3:353431/1‑149 (MQ=255)                   cGGTTCGGCGAAGCCCAGGGTGTCATGCACCAGCGCGGCGGTCTGCTGGGCGCGTACGTAAGGGCTGGCAACAATCGCCTGCAATGGCTGCCCGATCAGGTAAGCCGCACTGTGCAGCACCTGCTCGCGACCATGGTCAGTCAACCGgc                                                                                                                               <  6:355708/149‑1 (MQ=255)                                   aGGGTGTCATGCACCAGCGCGGCGGTCTGCTGGGCGCGTACGTAAGGGCTGGCAACAATCGCCTGCAATGGCTGCCCGATCAGGTAAGCCGCACTGTGCAGCACCTGCTCGCGACCATgg                                                                                                                                            <  5:182305/120‑1 (MQ=255)                                   aGGGTGTCATGCACCAGCGCGGCGGTCTGCTGGGCGCGTACGTAAGGGCTGGCAACAATCGCCTGCAATGGCTGCCCGATCAGGTAAGCCGCACTGTGCAGCACCTGCTCGCGACCATgg                                                                                                                                            >  6:182305/1‑120 (MQ=255)                                       tgtCATGCACCAGCGCGGCGGTCTGCTGGGCGCGTACGTAAGGGCTGGCAACAATCGCCCGCAATGGCTGCCCGATCAGGTAAGCCGCACTGTGCAGCACCTGCTCGCGACCATGGGCAGTCAACCGGCGCTCGG‑CATCCGTCTTGGcc                                                                                                          >  1:91349/1‑149 (MQ=255)                                           aTGCACCAGCGCGGCGGTCTGCTGGGCGCGTACGTAAGGGCTGGCAACAATCGCCTGCAATGGCTGCCCGATCAGGTAAGCCGCACTGTGCAGCACCTGCTCGCGACCATGGGCAGTCAACCGGCGCTCGG‑CATCCGTCTTGGCCcgcg                                                                                                      >  2:393622/1‑149 (MQ=255)                                             gCACCAGCGCGGCGGTCTGCTGGGCGCGTACGTAAGGGCTGGCAACAATCGCCTGCAATGGCTGCCCGATCAGGTAAGCCGCACTGTGCAGCACCTGCTCGCGACCATGGGCAGTCAACCGGCGCTCGG‑CATCCGTCTTGGCCCGCGGc                                                                                                    >  5:103215/1‑149 (MQ=255)                                               aCCAGCGCGGCGGTCTGCTGGGCGCGTACGTAAGGGCTGGCAACAATCGCCTGCAATGGCTGCCCGATCAGGTAAGCCGCACTGTGCAGCACCTGCTCGCGACCATGGGCAGTCAAcc                                                                                                                                  <  7:167170/118‑1 (MQ=255)                                               aCCAGCGCGGCGGTCTGCTGGGCGCGTACGTAAGGGCTGGCAACAATCGCCTGCAATGGCTGCCCGATCAGGTAAGCCGCACTGTGCAGCACCTGCTCGCGACCATGGGCAGTCAAcc                                                                                                                                  >  8:167170/1‑118 (MQ=255)                                                cgaGCGCGGCGGTCTGCTGGTCGTGTACGTAAGGGCTGGGAACAATCGCCTGCAATTGCTGCCCGATCAGGTAAGCCGCACTGTGCAGCACCTGCTCGCGACCATGGGCAGTCAAGCGGCGCTGGG‑CATCCGTCTTGGGCCGCGGCTCa                                                                                                 <  6:349975/147‑1 (MQ=255)                                                ccAGCGCGGCTGTCTGCGGGGCGCGTACGTAAGGGCTGGCAACAATCGCCTGCAATGGCTGCCCGATCAGGTAAGCCGCACTGTGCAGCACCTGCTCGCGACCATGGGCAGTCAACCGGCGCTCGG‑CATCCGTCTTGGCCCGCGGCTCa                                                                                                 <  4:221646/149‑1 (MQ=255)                                                         cggTCTGCTGGGCGCGTACGTAAGGGCTGGCAACAATCGCCTGCAATGGCTGCCCGATCAGGTAAGCCACACTGTGCAGCACCTGCTCGCGACCATGGGCAGTCAACCGGCGCTCGG‑CATCCGTCTTGGCCCGCGGCTCAGCTTCACCg                                                                                        <  1:125926/149‑1 (MQ=255)                                                            tCTGCTGGGCGCGTACGTAAGGGCTGGCAACAATCGCCTGCAATGGCTGCCCGATCAGGTAAGCCGCACTGTGCAGCACCTGCTCGCGACCATGGGCAGTCAACCGGCGCTCGG‑CATCCGTCTTGGCCCGCGACTCAGCTTCACCGTgg                                                                                     <  4:62783/149‑1 (MQ=255)                                                                 tgGGCGCGTACGTAAGGGCTGGCAACAATCGCCTGCAATGGCTGCCCGATCAGGTAAGCCGCACTGTGCAGCACCTGCTCGCGACCATGGGCAGTCAACCGGCGCTCGG‑CATCCGTCTTGGCCCGCGGCTCAGCTTCACCGTGGCgcag                                                                                >  6:214963/1‑149 (MQ=255)                                                                      gcgTACGTAAGGGCTGGCAACAATCGCCTGCAATGGCTGCCCGATCAGGTAAGCCGCACTGTGCAGCACCTGCTCGCGACCATGGGCAGTCAACCGGCGCTCGG‑CATCCGTCTTGGCCCGCGGCTCAGCTTCACCGTGGCGCAGCAcc                                                                            >  2:95845/1‑148 (MQ=255)                                                                        gtacgtaAGGGCTGGCAACAATCGCCTGCAATGGCTGCCCGATCAGGTAAGCCGCACTGTGCAGCTCCTGCTCGCGACCATGGGCAGTCAACCGGCACTCGG‑CATCCGTCTTGGCCCGCGGCTCAGCTTCACCGTGGCGCAGCACCca                                                                          >  2:303940/1‑148 (MQ=255)                                                                                 ggCTGGCAACAATCGCCTGCAATGGCTGCCCGATCAGGTAAGCCGCACTGTGCAGCACCTGCTCGCGACCATGGGCAGTCAACCGGCGCTCGG‑CATCCGTCTTGGCCCGCGGCTCAGCTTCACCGTGGCGCAGCACCcacagcttcaca                                                                <  1:393622/149‑1 (MQ=255)                                                                                       caacaaTCGCCTGCAATGGCTGCCCGATCAGGTAAGCCGCACTGTGCAGCACCTGCTCGCGACCATGGGCAGTCAACCGGCGCTCGG‑CATCCGTCTTGGCCCGCGGCTCAGCTTCACCGTGGCGCAGCACCCACAGCTTCACAGCTTgg                                                          >  5:400320/1‑149 (MQ=255)                                                                                       caacaaTCGCCTGCAATGGCTGCCCGATCAGGTAAGCCGCACTGTGCAGCACCTGCTCGCGACCATGGGCAGTCAACCGGCGCTCGG‑CATCCGTCTTGGCCCGCGGCTCAGCTTCACCGTGGCGCAGCACCCACAGCTTCACAGCTTgg                                                          <  3:336192/149‑1 (MQ=255)                                                                                             tCGCCTGCAATGGCTGCCCGATCAGGTAAGCCGCACTGTGCAGCACCTGCTCGCGACCATGGGCAGTCAACCGGCGCTCGG‑CATCCGTCTTGGCCCGCGGCTCAGCTTCACCGTGGCGCAGCACCCACAGCTTCACAGCTTGGGTTCCt                                                    >  6:373627/1‑149 (MQ=255)                                                                                               gCCTGCAATGGCTGCCCGATCAGGTAAGCCGCACTGTGCAGCACCTGCTCGCGACCATGGGCAGTCAACCGGCGCTCGG‑CATCCGTCTTGGCCCGCGGCTCAGCTTCACCGTGGCGCAGCACCCACAGCTTCACAGCTTGGGTTCCTCg                                                  >  8:357021/1‑149 (MQ=255)                                                                                               gCCTGCAATGGCTGCCCGATCAGGTAAGCCGCACTGTGCAGCACCTGCTCGCGACCATGGGCAGTCAACCGGCGCTCGG‑CATCCGTCTTGGCCCGCGGCTCAGCTTCACCGTGGCGCAGCACCCACAGCTTCACAGCTTGGGTTCCTCg                                                  >  1:40567/1‑149 (MQ=255)                                                                                                ccTGCTATGGCTGCCCGATCAGGTAAGCCGCACTGTGCAGCACCTGCTCGCGACCATGGGCAGTAAACCGGCGCTCGC‑CATCCGTCTTCGCCCGCGGCTCAGCTTCACCGTGGCGCAGAACCCACAGCTTCACAGCTTGGGTTcgtcgt                                                 >  4:23307/1‑149 (MQ=255)                                                                                                    cAATGGCTGCCCGATCAGGTAAGCCGCACTGTGCAGCACCTGCTCGCGACCATGGGCAGTCAACCGGCGCTCGG‑CATCCGTCTTGGCCCGCGGCTCAGCTTCACCGTGGCGCAGCACCCACAGCTTCACAGCTTGGGTTCCTCGTCa                                               <  5:214963/147‑1 (MQ=255)                                                                                                     aaTGGCTGCCCGATCAGGTAAGCCGCACTGTGCAGCACCTGCTCGCGACCATGGGCAGTCAACCGGCGCTCGG‑CATCCGTCTTGGCCCGCGGCTCAGCTTCACCGTGGCGCAGCACCCACAGCTTCACAGCTTGGGTTCCTCGTCACGc                                            >  8:297522/1‑149 (MQ=255)                                                                                                      aTGGCTGCCCGATCAGGTAAGCCGCACTGTGCAGCACCTGCTCGCGACCATGGGCAGTCAACCGGCGCTCGG‑CATCCGTCTTGGCCCGCGGCTCAGCTTCACCGTGGCGCAGCACCCACAGCTTCACAGCTTGGGTTCCTCGTCACGCa                                           >  7:190825/1‑149 (MQ=255)                                                                                                           gtcgcgagcaggtgctgcacagtgcggcttacctgatcgCGACCATGGGCAGTCAACCGGCGCTCGG‑CATCCGTCTTGGCCCGCGGCTCAGCTTCACCGTGGCGCAGCCCCCACAGCTTCACAGCTTGGGTTCCTCGTCACGCACCGGa                                      >  4:224386‑M2/40‑149 (MQ=255)                                                                                                            gCCCGATCAGGTGAGCCGCACTGTGCAGCACCTGCTCGCGACCATGGGCAGTCAACCGGCGCTCGG‑CATCCGTCTTGGCCCGCGGCTCAGCTTCACCGTGGCGCAGCACCCACAGCTTCACAGCTTGGGTTCCTCGTCACGCACCGGAt                                     >  6:210946/1‑149 (MQ=255)                                                                                                              ccGATCAGGTAAGCCGCACTGTGCAGCACCTGCTCGCGACCATGGGCAGTCAACCGGCGCTCGG‑CATCCGTCTTGGCCCGCGGCTCAGCTTCACCGTGGCGCAGCACCCACAGCTTCACAGCTTGGGTTCCTCGTCACGCACCGGATgc                                   >  4:17713/1‑149 (MQ=255)                                                                                                                gagcaggtgctgcacagtgcggcttacctgatcgCGACCATGGGCAGTCAACCGGCGCTCGG‑CATCCGTCTTGGCCCGCGGCTCAGCTTCACCGTGGCGCAGCACCcacagcttcacagctt                                                            <  5:51237‑M2/88‑1 (MQ=255)                                                                                                                gagcaggtgctgcacagtgcggcttacctgatcgCGACCATGGGCAGTCAACCGGCGCTCGG‑CATCCGTCTTGGCCCGCGGCTCAGCTTCACCGTGGCGCAGCACCcacagcttcacagctt                                                            >  6:51237‑M2/35‑122 (MQ=255)                                                                                                                gagcaggtgctgcacagtgcggcttacctgatcgCGACCATGGGCAGTCAACCGGCGCTCGG‑CATCCGTCTTGGCCCGCGGCTCAGCTTCACCGTGGCGCAGCACCCACAGCTTCACAGCTTGGGTTCCTCGTCACGCACCgg                                       >  1:390872‑M2/35‑143 (MQ=255)                                                                                                                gagcaggtgctgcacagtgcggcttacctgatcgCGACCATGGGCAGTCAACCGGCGCTCGG‑CATCCGTCTTGGCCCGCGGCTCAGCTTCACCGTGGCGCAGCACCCACAGCTTCACAGCTTGGGTTCCTCGTCACGCACCgg                                       <  2:390872‑M2/109‑1 (MQ=255)                                                                                                                GATCAGGTAAGCCGCACTGTGCAGCACCTGCTCGCGACCATGGGCAGTCAACCGGCGCTCGG‑CATCCGTCTTGGCCCGCGGCTCAGCTTCACCGTGGCGCAGCACCCACAGCTTCACAGCTTGGGTTCCTCGTCACGCACCGGATgcgc                                 <  3:365517‑M1/149‑1 (MQ=255)                                                                                                                GATCAGGTAAGCCGCACTGTGCAGCACCTGCTCGCGACCATGGGCAGTCAACCGGCGCTCGG‑CATCCGTCTTGGCCCGCGGCTCAGCTTCACCGTGGCGCAGCACCCACAGCTTCACAGCTTGGGTTCCTCGTCACGCACCGGATgcgc                                 <  1:311512‑M1/149‑1 (MQ=255)                                                                                                                    aGGTAAGCCGCACTGTGCAGCACCTGCTCGCGACCATGGGCAGTCAACCGGCGCTCGG‑CATCCGTCTTGGCCCGCGGCTCAGCTTCACCGTGGCGCAGCACCCACAGCTTCACAGCTTGGGTTCCTCGTCACGCACCGGATGCGCGGcc                             >  3:317188/1‑149 (MQ=255)                                                                                                                       tgaGCCGCACTGTGCAGCACCTGCTCGCGACCATGGGCAGTCAACCGGCGCTCGG‑CATCCGTCTTGGCCCGCGGCTCAGCTTCACCGTGGCGCAGCACCCACAGCTTCACAGCTTGGGTTCCTCGTCACGCACCGGATGCGCGGCCGGt                          <  5:210946/147‑1 (MQ=255)                                                                                                                         aGCCGCACTGTGCAGCACCTGCTCGTGACCATGGGCAGTCAACCGGCGCTCGG‑CATCCGTCTTGGCCCGCGGCTCAGCTTCACCGTGGCGCAGCACCCACAGCTTCACAGCTTGGGTTCCTCGTCACGCACCGGATGCGCGGCCGGTg                         <  2:65897/148‑1 (MQ=255)                                                                                                                          gCCGCACTGTGCAGCACCTGCTCGCGACCATGGGCAGTCAACCGGCGCTCGGTGATCCGTCTTGGCCCGCGGCTCAGCTTCACCGTGGCGCAGCACCCACAGCTTCACAGCTTGGGTTCCTCGTCACGCACCGGATGCGCGGCCGGTGc                        >  1:300105/1‑149 (MQ=255)                                                                                                                                 tgtgCAGCACCTGCTCGCGACCATGGGCAGTCAACCGGCGCTCGG‑CATCCGTCTTGGCCCGCGGCTCAGCTTCACCGTGGCGCAGCACCCACAGCTTCACAGCTTGGGTTCCTCGTCACGCACCGGATGcgcg                                <  2:382794/133‑1 (MQ=255)                                                                                                                                 tgtgCAGCACCTGCTCGCGACCATGGGCAGTCAACCGGCGCTCGG‑CATCCGTCTTGGCCCGCGGCTCAGCTTCACCGTGGCGCAGCACCCACAGCTTCACAGCTTGGGTTCCTCGTCACGCACCGGATGcgcg                                >  1:382794/1‑133 (MQ=255)                                                                                                                                 tgtgCAGCACCTGCTCGCGACCATGGGCAGTCAACCGGCGCTCGG‑CATCCGTCTTGGCCCGCGGCTCAGCTTCACCGTGGCGCAGCACCCACAGCTTCACAGCTTGGGTTCCTCGTCACGCACCGGATGCGCGGCCGGTGCCACGGCGt                >  5:320467/1‑149 (MQ=255)                                                                                                                                   tgCAGCACCTGCTCGCGACCATGGGCAGTCAACCGGCGCTCGG‑CATCCGTCTTGGCCCGCGGCTCAGCTTCACCGTGGCGCATCACCCACAGCTTCAAATCTTGGGTTCCTCGTCACGCACCGGATGCGCGTCCGGTGCCACgtcattc              >  4:289811/1‑143 (MQ=255)                                                                                                                                   tgCAGCACCTGCTCGCGACCATGGGCAGTCAACCGGCGCTCGG‑CATCCGTCTTGGCCCGCGGCTCAGCTTCACCGTGGCGCAGCACCCACAGCTTCACAGCTTGGGTTCCTCGTCACGCACCGGATGCGCGGCCGGTGCCACGGCGTgc              <  6:400320/149‑1 (MQ=255)                                                                                                                                     cagcaCCTGCTCGCGACCATGGGCAGTCAACCGGCGCTCGG‑CATCCGTCTTGGCCCGCGGCTCAGCTTCACCGTGGCGCAGCACCCACAGCTTCACAGCTTGGGTTCCTCGTCACGCACCGGATGCGCGGCCGGTGCCACGGCGTgcgc            >  7:325120/1‑149 (MQ=255)                                                                                                                                      agcaCCTGCTCGCGACCATGGGCAGTCAACCGGCGCTCGG‑CATCCGTCTTGGTCCGCGGCTCAGCTTCACCGTGGCGCAGCACCCACAGCTTCACAGCTTGGGTTCCTCGTCACGCACCGGATGCGCGGCCGGTGCCACGGCGTGCgct           >  2:15402/1‑149 (MQ=255)                                                                                                                                        caCCTGCTCGCGACCATGGGCAGTCAACCGGCGCTCGG‑CATCCGTCTTGGCCCGCGGCTCAGCTTCACCGTGGCGCAGCACCCACAGCTTCACAGCTTGGGTTCCTCGTCACGCACCGGATGCGCGGCCGGTGCCACGGCGTGCgctgc         >  1:78063/1‑149 (MQ=255)                                                                                                                                        caCCTGCTCGCGACCATGGGCAGTCAACCGGCGCTCGG‑CATCCGTCTTGGCCCGCGGCTCAGCTTCACCGTGGCGCAGCACCCACAGCTTCACAGCTTGGGTTCCTCGTCACGCACCGGATGCGCGGCCGGTGCCACGGCGTGCgctgc         <  2:311512/149‑1 (MQ=255)                                                                                                                                        caCCTGCTCGCGACCATGGGCAGTCAACCGGCGCTCGG‑CATCCGTCTTGGCCCGCGGCTCAGCTTCACCGTGGCGCAGCACCCACAGCTTCACAGCTTGGGTTCCTCGTCACGCACCGGATGCGCGGCCGGTGCCACGGCGTGCgctgc         >  4:27962/1‑149 (MQ=255)                                                                                                                                           cTGCTCGCGACCATGGGCAGTCAACCGGCGCTCGG‑CATCCGTCTTGGCCCGCGGCTCAGCTTCACCGTGGCGCAGCACCCACAGCTTCACAGCTTGGGTTCCTCGTCACGCACCGGATGCGCGGCCGGTGCCACGGCGTGCGCTGCtt       >  3:205136/1‑148 (MQ=255)                                                                                                                                               tcgCGACCATGGGCAGTCAACCGGCGCTCGG‑CATCCGTCTTGGCCCGCGGCTCAGCTTCACCGTGGCGCAGCACCCACAGCTTCACAGCTTGGGTTCCTCGTCACGCACCGGATGCGCGGCCGGTGCCACGGCGTGCGCTGCTTCACCt  >  6:206591‑M2/4‑149 (MQ=255)                                                                                                                                                  |                                                                                                                                                   CCAGGGCACGGTGCGCACCGGTTCGGCGAAGCCCAGGGTGTCATGCACCAGCGCGGCGGTCTGCTGGGCGCGTACGTAAGGGCTGGCAACAATCGCCTGCAATGGCTGCCCGATCAGGTAAGCCGCACTGTGCAGCACCTGCTCGCGACCATGGGCAGTCAACCGGCGCTCGG‑CATCCGTCTTGGCCCGCGGCTCAGCTTCACCGTGGCGCAGCACCCACAGCTTCACAGCTTGGGTTCCTCGTCACGCACCGGATGCGCGGCCGGTGCCACGGCGTGCGCTGCTTCACCT  >  NC_002947/4709908‑4710198

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.