New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3387133	43 (0.680)	3 (0.050)	3/252	NT	7.0%	coding (977/1017 nt)	PP_2988	alcohol dehydrogenase
	?	NC_002947	= 3387150	39 (0.650)					coding (994/1017 nt)	PP_2988	alcohol dehydrogenase

GTTTCTTTTCGTGCAGCCCGACGGTGCCCAACTCGCCGAAATCGGCAAGCTTCTGGACGCCCAGCAAATTCAGCCGGTGATCGACCGGGTATTTCCGTTCGAGGACGCAAAGGGTGCGCTTGAGTACCTTGCTCAAGGGCGCTCCAAGGGCAAGGTCGTAATCAAGATGTGACTGCCGCCGTATT‑TCTCACACAACCATCGACATAAAGGTAACTTCCATGACCACACGTCCGACCGTACTCATTACTGGCGCCTCCAGCGGCATTGGCGCCACCTACGCCGAGCGTTTCGCC  >  NC_002947/3387002‑3387294                                                                                                                                                     |                                                                                                                                                  gTTTCTTTTCGTGCAGCCCGACGGTGCCCAACTCGCCGAAATCGGCAAGCTTCTGGACGCCCAGCAAATTCAGCCGGTGATCGACCGGGTATTTCCGTTCGAGGACGCAAAGGGTGCGCTTGAGTACCTTGCTCAAGGGCGCTCCAAgg                                                                                                                                                   <  7:11748/149‑1 (MQ=255)  tttCTTTTCGTGCAGCCCGACGGTGCCCAACTCGCCGAAATCGGCAAGCTTCTGGACGCCCAGCAAATTCAGCCGGTGATCGACCGGGTATTTCCGTTCGAGGACGCAAAGGGTGCGCTTGAGTACCTTGCTCAAGGGCGCTCCAAGGg                                                                                                                                                  <  2:338403‑M2/149‑2 (MQ=255)          cGTGCAGCCCGACGGTGCCCAACTCGCCGAAATCGGCAAGCTTCTGGACGCCCAGCAAATTCAGCCGGTGATCGACCGGGTATTTCCGTTCGAGGACGCAAAGGGTGCGCTTGAGTACCTTGCTCAAGGGCGCTCCAAGGGCAAGGTc                                                                                                                                           <  4:390493/148‑1 (MQ=255)           gTGCAGCCCGACGGTGCCCAACTCGCCGAAATCGGCAAGCTTCTGGACGCCCAGCAAATTCAGCCGGTGATCGACCGGGTATTTCCGTTCGAGGACGCAAAGGGTGCGCTTGAGTACCTTGCTCAAGGGCGCTCCAAGGGCAAGGTCg                                                                                                                                          <  5:80882/148‑1 (MQ=255)             gCATCCCGACGGTGCCCAACTCGACGAAATCGGCAAGCTTCTGGACGCCCATCAAATTCAGCCGGTGATCGACCGTGTATTTCCGTTCGAGGACGCAAAGGGTGCGCTTGAGTACCTTGCTCAAGGGCGCTCCAAGGGCAAGGTCGTa                                                                                                                                        <  4:229423/148‑1 (MQ=255)             gCAGCCCGACGGTGCCCAACTCGCCGAAATCGGCAAGCTTCTGGACGCCCAGCAAATTCAGCCGGTGATCGACCGGGTATTTCCGTTCGAGGACGCAAAGGGTGCGCTTGAGTACCTTGCTCAAGGGCGCTCCAAGGGCAAGGTCGTaa                                                                                                                                       >  7:15899/1‑149 (MQ=255)              cAGCCCGACGGTGCCCAACTCGCCGAAATCGGCAAGCTTCTGGACGCCAAGCAAATTCAGCCGGTGATCGACCGGGTATTTCCGTTCGAGGACGCAAAGGGTGCGCTTGAGTACCTTGCTCAAGGGCGCTCCAAGGGCAAGGTCGTAAt                                                                                                                                      >  6:267603/1‑149 (MQ=255)                  ccGACGGTGCCCAACTCGCCGAAATCGGCAAGCTTCTGGACGCCCAGCAAATTCAGCCGGTGATCGACCGGGTATTTCCGTTCGAGGACGCAAAGGGTGCGCTTGAGTACCTTGCTCAAGGGCGCTCCAAGGGCAAGGTCGTAATCAAg                                                                                                                                  <  2:31736/149‑1 (MQ=255)                           cccAACTCGCCGAAATCGGCAAGCTTCTGGACGCCCAGCAAATTCAGCCGGTGATCGACCGGGTATTTCCGTTCGAGGACGCAAAGGGTGCGCTTGAGTACCTTGCTCAAGGGCGCTCCAAGGGCAAGGTCGTAATCAAGATGTGACt                                                                                                                          <  1:221286/148‑1 (MQ=255)                            ccAACTCGCCGAAATCGGCAAGCTTCTGGACGCCCAGCAAATTCAGCCGGTGATCGACCGGGTATTTCCGTTCGAGGACGCAAAGGGTGCGCTTGAGTACCTTGCTCAAGGGCGCTCCAAGGGCAAGGTCGTAATCAAGATGTGACTgc                                                                                                                        >  2:188245/1‑149 (MQ=255)                                ctctcagAAATCGGCAAGCGTCTGGACGCCCATCAAATTCAGCCGGTGATCGACCGGGTATTTGCGTTCGAGGACGCAAAGGGTGCGCTTGAGTACCTTGCTCAAGGGCGCTCCAAGGGCAAGGTCGTAATCAAGATGTGACTgccgcc                                                                                                                    <  5:290418/143‑1 (MQ=255)                                   gCCGAAATCGGCAAGCTTCTGGACGCCCAGCAAATTCAGCCGGTGATCGACCGGGTATTTCCGTTCGAGGACGCAAAGGGTGCGCTTGAGTACCTTGCTCAAGGGCGCTCCAAGGGCAAGGTCGTAATCAAGATGTGACTGCCGCCGTa                                                                                                                 <  1:188245/149‑1 (MQ=255)                                     cGAAATCGGCCAGCTTCTGGACGCCCAGCAAATTCAGCCGGTGATCGACCGGGTATTTCCGTTCGAGGACGCTAAGGGTGCGCTTGAGTACCTTGCTCAAGGGCGCTCCAAGGGCAAGGTCGTAATCAAGATGTGACTGCCGCCGTAtt                                                                                                               >  6:90221/1‑149 (MQ=255)                                        aaTCGGCAAGCTTCTGGACGCCCAGCAAATTCAGCCGGTGATCGACCGGGTATTTCCGTTCGAGGACGCAAAGGGTGCGCTTGAGTACCTTGCTCAAGGGCGCTCCAAGGGCAAGGTCGTAATCAAGATGTGACTGCCGCCGTATT‑tc                                                                                                            <  1:338403/148‑1 (MQ=255)                                           cGGCAAGCTTCTGGACGCCCAGCAAATTCAGCCGGTGATCGACCGGGTATTTCCGTTCGAGGACGCAAAGGGTGCGCTTGAGTACCTTGCTCAAGGGCGCTCCAAGGGCAAGGTCGTAATCAAGATGTGACTGCCGCCGTATT‑TCTca                                                                                                         >  2:24679/1‑148 (MQ=255)                                             gCAAGCTTCTGGACGCCCAGCAAATTCAGCCGGTGATCGACCGGGTATTTCCGTTCGAGGACGCAAAGGGTGCGCTTGAGTACCTTGCTCAAGGGCGCTCCAAGGGCAAGGTCGTAATCAAGATGTGACTGCCGCCGTATT‑TCTcaca                                                                                                       >  3:318732/1‑148 (MQ=255)                                                      tGGACGCCCAGCAAATTCAGCCGGTGATCGACCTGGTATTTCCGTTCGAGGACGCAAAGGGTGCGCTTGAGTACCTTGCTCAAGGGCGCTCCAAGGGCAAGGGCGTAATCAAGATGTGACTGCCGCCGTATT‑TCTCACACAACCATCGa                                                                                             <  7:228592/149‑1 (MQ=255)                                                           gCCCAGCAAATTCAGCCGGTGATCGACCGGGTATTTCCGTTCGAGGACGAAAAGGGTGCGCTTGAGTACCTTGCTCAAGGGCGCTCCAAGGGCAAGGTCGTAATCAAGATGTGACTGCCGCCGTATT‑TCTCACACAACCATCGACATa                                                                                         >  4:96781/1‑148 (MQ=255)                                                            cccAGCAAATTCAGCCGGTGATCGACCGGGTATTTCCGTTCGAGGACGAAAAGGGTGCGCTTGAGTACCTTGCTCAAGGGCGCTCCAAGGGCAAGGTCGTAATCAAGATGTGACTGCCGCCGTATT‑TCTCACACAACCATCGACATaaa                                                                                       <  3:96781/149‑1 (MQ=255)                                                              cAGCAAATTCAGCCGGTGATCGACCGGGTATTTCCGTTCGAGGACGCAAAGGGTGCGCTTGAGTACCTTGCTCAAGGGCGCTCCAAGGGCAAGGTCGTAATCAAGATGTGACTGCCGCCGTATT‑TCTCACACAACCATCGACATAAAgg                                                                                     >  5:122351/1‑149 (MQ=255)                                                                gCAAATTCAGCCGGTGATCGACCGGGTATTTCCGTTCGAGGACGCAAAGGGTGCGCTTGAGTACCTTGCTCAAGGTCGCTCCAAGGGCAAGGTCGTAATCAAGATGTGACTGCCGCCGTATTCTCTCACACAACCATCGACATAAAGGt                                                                                    <  1:5144/149‑1 (MQ=255)                                                                       cAGCCGGTGATCGACCGGGTATTTCCGTTCGAGGACGCAAAGGGTGCGCTTGAGTACCTTGCTCAAGGGCGCTCCAAGGGCAAGGTCGTAATCAAGATGTGACTGCCGCCGTATT‑TCTCACACAACCATCGACATAAAGGTAACTTcc                                                                             <  3:332189/148‑1 (MQ=255)                                                                        aGCCGGTGATCGACCGGGTATTTCCGTTCGAGGACGCAAAGGGTGCGCTTGAGTACCTTGCTCAAGGGCGCTCCAAGGGCAAGGTCGTAATCAAGATGTGACTGCCGCCGTATT‑TCTCACACAACCATCGACATAAAGGTAACTTCCAt                                                                           >  2:348098/1‑149 (MQ=255)                                                                         gCCGGTGATCGACCGGGTATTTCCGTTCGAGGACGCAAAGGGTGCGCTTGAGTACCTTGCTCAAGGGCGCTCCAAGGGCAAGGTCGTAATCAAGATGTGACTGCCGCCGTATT‑TCTCACACAACCATCGACATAAAGGTAACTTCCATg                                                                          >  1:174428/1‑149 (MQ=255)                                                                              tGATCGACCGGGTATTTCCGTTCGAGGACGCAAAGGGTGCGCTTGAGTACCTTGCTCAAGGGCGCTCCAAGGGCAAGGTCGTAATCAAGATGTGACTGCCGCCGTATT‑TCTCACACAACCATCGACATAAAGGTAACTTCCATGACcac                                                                     <  1:348098/149‑1 (MQ=255)                                                                                   gACCGGGTATTTCCGTGCGAGGACGCACAGGGTGCGCTTGAGTACCTTGCTCAAGGGCGCTCCAAGGGCAAGGTCGTAATCAAGATGTGACTGCCGCCGTATT‑TCTCACACAACCATCGACATAAAGGTAACTTCCATGACCACACGTc                                                                <  6:389108/149‑1 (MQ=255)                                                                                     ccGGGTATTTCCGTTCGAGGACGCAAAGGGTGCGCTTGAGTACCTTGCTCAAGGGCGCTCCAAGGGCAAGGTCGTAATCAAGATGTGACTGCCGCCGTATT‑TCTCACACAACCATCGACATAAAGGTAACTTCCATGACCACACGTcc                                                               >  3:333111/1‑148 (MQ=255)                                                                                        ggTATTTCGGTTCTATGACGCAATGGGTGCGCTTGAGTACCTTGCTCAAGGGCTCTCCAAGGGGAAGGTCg                                                                                                                                          <  6:71555/71‑1 (MQ=255)                                                                                        ggTATTTCCGTTCGAGGACGCAAAGGGTGCGCTTGAGTACCTTGCTCAAGGGCGCTCCAAGGGCAAGGTCGTAATCAAGATGTGACTGCCGCCGTATT‑TCTCACACAACCATCGACATAAAGGTAACTTCCATGACCACACGTCCGAcc                                                           >  7:363085/1‑149 (MQ=255)                                                                                            tttCCGTTCGAGGACGCAAAGGGTGCGCTTGAGTACCTTGCTCAAGGGCGCTCCAAGGGCAAGGTCGTAATCAAGATGTGACTGCCGCCGTATT‑TCTCACACAACCATCGACATAAAGGTAACTTCCATGACCACACGTCCGACCGTa                                                        <  5:267603/148‑1 (MQ=255)                                                                                              tCCGTTCGAGGACGCAAAGGGTGCGCTTGAGTACCTTGCTCAAGGGCGCTCCAAGGGCAAGGTCGTAATCAAGATGTGACTGCCGCAGTATT‑TCTCACACAACCATAGACATAAAGGTACCTTCCATGACCACACGTCCGAGCGTACt                                                      >  6:44639/1‑148 (MQ=255)                                                                                                cGTTCGAGGACGCAAAGGGTGCGCTTGAGTACCTTGCTCAAGGGCGCTCCAAGGGCAAGGTCGTAATCAAGATGTGACTGCCGCCGTATT‑TCTCACACAACCATCGACATAAAGGTAACTTCCATGACCACACGTCCGACCGTACTCAt                                                   <  8:15899/149‑1 (MQ=255)                                                                                                  ttCGAGGACGCAAAGGGTGCGCTTGAGTACCTTGCTCAAGGGCGCTCCAAGGGCAAGGTCGTAATCAAGATGTGACTGCCGCCGTATT‑TCTCACACAACCATCGACATAAAGGTAACTTCCATGACCACACGTCCGACCGTACTCAtt                                                  <  4:35773/148‑1 (MQ=255)                                                                                                  ttCGAGGACGCAAAGGGTGCGCTTGAGTACCTTGCTCAAGGGCGCTCCAAGGGCAAGGTCGTAATCAAGATGTGACTGCCGCCGTATT‑TCTCACACAACCATCGACATAAAGGTAACTTCCATGACCACACGTCCGACCGTACTCAtt                                                  >  3:35773/1‑148 (MQ=255)                                                                                                  ttCGAGGACGCAAAGGGTGCGCTTGAGTACCTTGCTCAAGGGCGCTCCAAGGGCAAGGTCGTAATCAAGATGTGACTGCCGCCGTATT‑TCTCACACAACCATCGACATAAAGGTAACTTCCATGACCACACGTCCGACCGTACTCATTa                                                 >  6:358306/1‑149 (MQ=255)                                                                                                            cAAAGGGTGCGCTTGAGTACCTTGCTCAAGGGCGCTCCAAGGGCAAGGTCGTAATCAAGATGTGACTGCCGCCGTATT‑TCTCACACAACCATCGACATAAAGGTAACTTCCATGACCACACGTCCGACCGTACTCATTACTGGCGCCTc                                       <  6:122351/149‑1 (MQ=255)                                                                                                              aaGGGTGCGCTTGAGTACCTTGCTCAAGGGCGCTCCAAGGGCAAGGTCGTAATCAAGATGTGACTGCCGCCGTATT‑TCTCACACAACCATCGACATAAAGGTAACTTCCATGACCACACGTCCGACCGTACTCATTACTGGCGCCTCCa                                     <  4:333111/149‑1 (MQ=255)                                                                                                                       cTTGAGTACCTTGCTCAAGGGCGCTCCAAGGgcaaggtactcaagcgcaccctttgcgtcctcgaacggaaatacccggtcgatcaccggctgaatttgctgggcgtccagaagcttgccgatttcggcgagttgggcaccgtcgggct                             <  3:163170‑M2/149‑119 (MQ=255)                                                                                                                        ttGAGTACCTTGCTCAAGGGCGCTCCAAGGGCAAGGTCGTAATCAAGATGTGACTGCCGCCGTATT‑TCTCACACAACCATCGACATAAAGGTAACTTCCATGACCACACGTCCGACCGTACTCATTACTGGCGCCTCCAGCGGCATTgg                           >  4:325452/1‑149 (MQ=255)                                                                                                                              aCCTTGCTCAAGGGCGCTCCAAGGgcaaggtactcaagcgcaccctttgcgtcctcgaacggaaatacccggtcgatcaccggctgaatttgctgg                                                                           <  4:346742‑M2/96‑73 (MQ=255)                                                                                                                              aCCTTGCTCAAGGGCGCTCCAAGGgcaaggtactcaagcgcaccctttgcgtcctcgaacggaaatacccggtcgatcaccggctgaatttgctgg                                                                           >  3:346742‑M2/1‑24 (MQ=255)                                                                                                                                cTTGCTCAAGGGCGCTCCAAGGGCAAGGTCGTAATCAAGATGTGACTGCCGCCGTATT‑TCTCACACAACCATCGACATAAAGGTAACTTCCATGACCACACGTCCGACCGTACTCATTACTGGCGCCTCCAGCGGCATTGGCGCCAcc                    >  4:309951/1‑148 (MQ=255)                                                                                                                                cTTGCTCAAGGGCGCTCCAAGGGCAAGGTCGTAATCAAGATGTGACTGCCGCCGTATT‑TCTCACACAACCATCGACATAAAGGTAACTTCCATGACCACACGTCCGACCGTACTCATTACTGGCGCCTCCAGCGGCATTGGCGCCAcc                    >  1:359179/1‑148 (MQ=255)                                                                                                                                cTTGCTCAAGGGCGCTCCAAGGGCAAGGTCGTAATCAAGATGTGACTGCCGCCGTATT‑TCTCACACAACCATCGACATAAAGGTAACTTCCATGACAACACGTCCGACCGTACTCATTACTGGCGCCTCCAGCGGCATTGGCGCCAcc                    >  7:6841/1‑148 (MQ=255)                                                                                                                                 ttGCTCAAGGGCGCTCCAAGGGCAAGGTCGTAATCAAGATGTGACTGCCGCCGTATT‑TCTCACACAACCATCGACATAAAGGTAACTTCCATGACCACACGTCCGACCGTACTCATTACTGGCGCCTCCAGCGGCATTGGCGCCACCTa                  >  2:79602/1‑149 (MQ=255)                                                                                                                                     tCAAGGGCGCTCCAAGGGCAAGGTCGTAATCAAGATGTGACTGCCGCCGTATT‑TCTCACACAACCATCGACATAAAGGTAACTACAATGACCACAGGTACGACCGTACACATTAATGGCGCCTCAAGCGACATTGGCGCCACCAACGcc              >  1:323087/1‑149 (MQ=255)                                                                                                                                       aaGGGCGCGCCAAGGGCAAGGTGGTAATCAAGATGTGACTGCCGCCGTATT‑TCTCACACCACCATCGACATAAAGGTTACTTCCATGACCACCCGTCCGACCGGACTCATTACTGGCGCAGCCAGCGGCATTGGCGCCCCCTACGCCGa            >  8:145785/1‑149 (MQ=255)                                                                                                                                        aGGGCGCTCCAAGGGCAAGGTCGTAATCAAGATGTGACTGCCGCCGTATT‑TCTCACACAACCATCGACATAAAGGTAACTTCCATGACCACACGTCCGACCGTACTCATTACTGGCGCCTCCAGCGGCATTGGCGCCACCTACGCCGAg           <  3:309951/149‑1 (MQ=255)                                                                                                                                               tCCAAGGGCAAGGTCGTAATCAAGATGTGACTGCCGCCGTATT‑TCTCACACAACCATCGACATAAAGGTAACTTCCATGACCACACGTCCGACCGTACTCATTACTGGCGCCTCCAGCGGCATTGGCGCCACCTACGCCGAGCGTTTCg    >  1:208122/1‑149 (MQ=255)                                                                                                                                                 cAAGGGCAAGGTCGTAATCAAGATGTGACTGCCGCCGTATT‑TCTCACACAACCATCGACATAAAGGTAACTTCCATGACCACACGTCCGACCGTACTCATTACTGGCGCCTCCAGCGGCATTGGCGCCACCTACGCCGAGCGTTTCGcc  >  7:322795/1‑149 (MQ=255)                                                                                                                                                 cAAGGGCAAGGTCGTAATCAAGATGTGACTGCCGCCGTATT‑TCTCACACAACCATCGACATAAAGGTAACTTCCATGACCACACGTCCGACCGTACTCATTACTGGCGCCTCCAGCGGCATTGGCGCCACCTACGCCGAGCGTTTCGc   <  4:318732/148‑1 (MQ=255)                                                                                                                                                 cAAGGGCAAGGTCGTAATCAAGATGTGACTGCCGCCGTATT‑TCTCACACAACCATCGACATAAAGGTAACTTCCATGACCACACGCCCGACCGTACTCATTACTGGCGCCTCCAGCGGCATTGGCGCCACCTACGCCGAGCGTTTCGcc  >  6:256275/1‑149 (MQ=255)                                                                                                                                                     ggCAAGGTCGTAATCAAGATGTGACTGCCGCCGTATT‑TCTCACACAACCATCGACATAAAGGTAACTTCCATGACCACACGTCCGACCGTACTCATTACTGGCGCCTCCAGCg                                  >  4:276516/1‑113 (MQ=255)                                                                                                                                                     ggCAAGGTCGTAATCAAGATGTGACTGCCGCCGTATT‑TCTCACACAACCATCGACATAAAGGTAACTTCCATGACCACACGTCCGACCGTACTCATTACTGGCGCCTCCAGCg                                  <  3:276516/113‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                  GTTTCTTTTCGTGCAGCCCGACGGTGCCCAACTCGCCGAAATCGGCAAGCTTCTGGACGCCCAGCAAATTCAGCCGGTGATCGACCGGGTATTTCCGTTCGAGGACGCAAAGGGTGCGCTTGAGTACCTTGCTCAAGGGCGCTCCAAGGGCAAGGTCGTAATCAAGATGTGACTGCCGCCGTATT‑TCTCACACAACCATCGACATAAAGGTAACTTCCATGACCACACGTCCGACCGTACTCATTACTGGCGCCTCCAGCGGCATTGGCGCCACCTACGCCGAGCGTTTCGCC  >  NC_002947/3387002‑3387294

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.