New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 111497	52 (1.230)	4 (0.100)	4/248	NT	7.5%	coding (1517/1590 nt)	ctaD	cytochrome c oxidase subunit 1
	?	NC_002947	= 111528	49 (1.210)					coding (1548/1590 nt)	ctaD	cytochrome c oxidase subunit 1

ATCCCCGACTACAACCTGCAGTTCGCCGATTTCAACATGGTGTCGTCGATCGGCGCGTTCATGTTCGGCGCCACGCAGATCTTCTTCCTGTTCATTGTCATCAAGTGCATCCGCGGTGGCGCGCCGGCACCGGCCAAACCCTGGGATGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/111346‑111497 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgcAGGCGAGGGTATCGACCACTCAAGGCCCTCGGCGCCATCCCAGGGTTTGGCCGGTGCCGGCGCGCCACCGCGGATGCACTTGATGACAATGAACAGGAAGAAGATCTGCGTGGCGCCGAACATGAACGCGCCGATCGACGACACCA  <  NC_002947/111528‑111383                                                                                                                                                                                                                                                                                                            ATCCCCGACTACAACCTGCAGTTCGCCGATTTCAACATGGTGTCGTCGATCGGCGCGTTCATGTTCGGCGCCACGCAGATCTTCTTCCTGTTCATTGTCATCAAGTGCATCCGCGGTGGCGCGCCGGCACCGGCCAAACCCTGGGATGG                                                                                                                                                       >  4:126524/1‑149                                TCAACATGGTGTCGTCGATCGGCGCGTTCATGTTCGGCGCCACGCAGATCTTCTTCCTGTTCATTGTCATCAAGTGCATCCGCGGTGGCGCGCCGGCACCGGCCAAACCCTGGGATGGCACAGGCGAGGGTATCGACCACTCAAGGCCC                                                                                                                        >  1:210779/1‑149                                      TGGTGTCGTCGATCGGCGCGTTCATGTTCGGCGCCACGCAGATCTTCTTCCTGTTCATTGTCATCAAGTGCATCCGCGGTGGCGCGCCGGCACCGGCCAAACCCTGGGATGGCGCAGGCGAGGGTATCGACCACTCAAGGCCCTCGGCG                                                                                                                  <  7:162491/149‑1                                           TCGTCGATCGGCGCGTTCATGTTCGGCGCCACGCAGATCTTCTTCCTGTTCATTGTCATCAAGTGCATCCGCGGTGGCGCGCCGGCACCGGCCAAACCCTGGGATGGCACAGGCGAGGGTATCGACCACTCAAGGCCCTCGGCGCCAT                                                                                                              <  2:210779/148‑1                                                 ATCGGCGCGTTCATGTTCGGCGCCTCGCAGATCTTCTTCCTGTTCATTGTCATCCAGTGCATCCGCGGTGGCGCGCCGGCACCGGCCAAACCCTGGGATGGCGCAGGCGAGGGTATCGACCACTACAGGCCCTCGGCGCCATCCCAGG                                                                                                        <  7:169045/148‑1                                                                                                                                                      CGCAGGCGAGGGTATCGACCACTCAAGGCCCTCGGCGCCATCCCAGGGTTTGGCAGGTGCCGGCGCGCCACCGCGGATGCACTTGATGACAATGAACAGGAAGAAGATCTGCGTGGCGCCGAACATGAACGCGCCGATCGACGACACCA  >  8:141780/1‑149                                                                                                                                                                                                                                                                                                            ATCCCCGACTACAACCTGCAGTTCGCCGATTTCAACATGGTGTCGTCGATCGGCGCGTTCATGTTCGGCGCCACGCAGATCTTCTTCCTGTTCATTGTCATCAAGTGCATCCGCGGTGGCGCGCCGGCACCGGCCAAACCCTGGGATGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/111346‑111497 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgcAGGCGAGGGTATCGACCACTCAAGGCCCTCGGCGCCATCCCAGGGTTTGGCCGGTGCCGGCGCGCCACCGCGGATGCACTTGATGACAATGAACAGGAAGAAGATCTGCGTGGCGCCGAACATGAACGCGCCGATCGACGACACCA  <  NC_002947/111528‑111383

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.