New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 11149752 (1.230)4 (0.100) 4/248 NT 7.5% coding (1517/1590 nt) ctaD cytochrome c oxidase subunit 1
?NC_002947 = 111528 49 (1.210)coding (1548/1590 nt) ctaD cytochrome c oxidase subunit 1

ACATGGTGTCGTCGATCGGCGCGTTCATGTTCGGCGCCACGCAGATCTTCTTCCTGTTCATTGTCATCAAGTGCATCCGCGGTGGCGCGCCGGCACCGGCCAAACCCTGGGATGGCGCCGAGGGCCTTGAGTGGTCGATACCCTCGCCTGCGCCCTACCACACCTTCCAGACACCCCCGGAAGTGAAATAGGAACCCGCCATGAACGGCCTGTCGGTGAAACGCCTGGTAACGCGCCTGTTGATGCTGACGGTGGTGATGTTCGCCTTCGGCTTCGCGCTGGTGCCGATCTACGA  >  NC_002947/111380‑111674
                                                                                                                                                    |                                                                                                                                                  
aCATGGTGTCGTCGATCGGCGCGTTCATGTTCGGCGCCACGCAGATCTTCTTCCTGTTCATTGTCATCAAGTGCATCCGCGGTGGCGCGCCGGCACCGGCCAAACCCTGGGATGGCGCCGAGGGCCTTGAGTGGTCGATACCCTCGCCt                                                                                                                                                    >  1:134371/1‑149 (MQ=255)
   tGGTGTCGTCGATCGGCGCGTTCATGTTCGGCGCCACGCAGATCTTCTTCCTGTTCATTGTCATCAAGTGCATCCGCGGTGGCGCGCCGGCACCTGCCAAACCCTGGGATGGCGCCGAGGGCCTTGAGTGGTCGATACCCTCGCCTgcg                                                                                                                                                 >  8:141780‑M2/1‑146 (MQ=255)
      tgtCGTCGATCGGCGCGTTCATGTTCGGCGCCACGCAGATCTTCTTCCTGTTCATTGTCATCAAGTGCATCCGCGGTGGCGCGCCGGCACCGGCCAAACCCTGGGATGGCGCCGAGGGCCTTGAGTGGTCGATACCCTCGCCTGCGccc                                                                                                                                              <  2:18077/149‑1 (MQ=255)
         cgtcgATCGGCGCGTTCATGTTCGGCGCCACGCAGATCTTCTTCCTGTTCATTGTCATCAAGTGCATCCGCGGTGGCGCGCCGGCACCGGCCAAACCCTGGGATGGCGCCGAGGGCCTTGAGTGGTCGATACCCTCGCCTGCGCCCTAc                                                                                                                                           <  1:150161/149‑1 (MQ=255)
            cgATCGGCGCGTTCATGTTCGGCGCCACGCAGATCTTCTTCCTGTTCATTGTCATCAAGTGCATCCGCGGTGGCGCGCCGGCACCGGCCAAACCCTGGGATGGCGCCGAGGGCCTTGAGTGGTCGATACCCTCGCCTGCGCCATACcac                                                                                                                                        <  7:215152/149‑1 (MQ=255)
               tCGGCGCGTTCATGTTCGGCGCCACGCAGATCTTCTTCCTGTTCATTGTCATCAAGTGCATCCGCGGTGGCGCGCCGGCACCGGCCAAACCCTGGGATGGCGCCGAGGGCCTTGAGTGGTCGATACCCTCGCCTGCGCCCTACCACAcc                                                                                                                                     <  2:142263/149‑1 (MQ=255)
                             ttCGGCGCCACGCAGATCTTCTTCCTGTTCATTGTCATCAAGTGCATCCGCGGTGGCGCGCCGGCACCGGCCAAACCCTGGGATGGCGCCGAGGGCCTTGAGTGGTCGATACCCTCGCCTGCGCCCTACCACACCTTCCAGACAccccc                                                                                                                       >  5:76877/1‑149 (MQ=255)
                                       cGCAGATCTTCTTCCTGTTCATTGTCATCAAGTGCATCCGCGGTGGCGCGCCGGCACCGGCCAAACCCTGGGATGGCGCCGAGGGCCTTGAGTGGTCGATACCCTCGCCTGCGCCCTACCACACCTTCCAGACACCCCCGGAAGTGaaa                                                                                                             <  3:29840/149‑1 (MQ=255)
                                        gCAGATCTTCTTCCTGTTCATTGTCATCAAGTGCATCCGCGGTGGCGCGCCGGCACCGGCCAAACCCTGGGATGGCGCCGAGGGCCTTGAGTGGTCGATACCCTCGCCTGCGCCCTACCACACCTTCCAGACACCCCCGGAAGTGaaa                                                                                                             >  8:195356/1‑148 (MQ=255)
                                        gCAGATCTTCTTCCTGTTCATTGTCATCAAGTGCATCCGCGGTGGCGCGCCGGCACCGGCCAAACCCTGGGATGGCGCCGAGGGCCTTGAGTGGTCGATACCCTCGCCTGCGCCCTACCACACCTTCCAGACACCCCCGGAAGTGAAAt                                                                                                            <  3:215164/149‑1 (MQ=255)
                                         gaGATCTTTTTCGTTTTCATTGTCATCAAGTGCATCCTCGGTGGTGCGTCGGTACGTGCTTAACCCTTGGANGTCGCCGTGGGCCTTGAGTGGTCGATACCCTCGCCTGCGCGCTACCACACCTTCCAGACACCCCCGGAAGTGAAATa                                                                                                           <  1:86187/148‑1 (MQ=255)
                                         cAGATCTTCTTCCTGTTCATTGTCATCAAGTGCATCCGCGGTGGCGCGCCGGCACCGGCCAAACCCTGGGATGGCGCCGAGGGCCTTGAGTGGTCGATACCCTCGCCTGCGCCCTACCACACCTTCCAGACACCCCCGGAAGTGAAATa                                                                                                           <  7:195356/149‑1 (MQ=255)
                                         cAGATCTTCTTCCTGTTCATTGTCATCAAGTGCATCCGCGGTGGCGCGCCGGCACCGGCCAAACCCTGGGATGGCGCCGAGGGCCTTGAGTGGTCGATACCCTCGCCTGCGCCCTACCACACCTTCCAGACACCCCCGGAAGTGAAATa                                                                                                           <  2:198246/149‑1 (MQ=255)
                                               ttcttcCTGTTCATTGTCATCAAGTGCATCCGCGGTGGCGCGCCGGCACCGGCCAAACCCTGGGATGGCGCCGAGGGCCTTGAGTGGTCGATACCCTCGCCTGCGCCCTACCACACCTTCCAGACACCCCCGGAAGTGAAATAGGAAcc                                                                                                     >  2:146263/1‑149 (MQ=255)
                                                    ccTGTTCATTGTCATCAAGTGCATCCGCGGTGGCGCGCCGGCACCGGCCAAACCCTGGGATGGCGCCGAGGGCCTTGAGTGGTCGATACCCTCGCCTGCGCCCTACCACACCTTCCAGACACCCCCGGAAGTGAAATAGGAACCCGcc                                                                                                 <  2:134371/148‑1 (MQ=255)
                                                      tGTTCATTGTCATCAAGTGCATCCGCGGTGGCGCGCCGGCACCGGCCAAACCCTGGGATGGCGCCGAGGGCCTTGAGTGGTCGATACCCTCGCCTGCGCCCTACCACACCTTCCAGACACCCCCGGAAGTGAAATAGGAACCCGCCAt                                                                                               >  2:137170/1‑148 (MQ=255)
                                                                  tcaAGTGCATCCGCTGTGGCGCGCCGGCACCGGCCAAACCCTGGGATGGCGCCGAGGGCCTTGAGTGGTCGATACCCTCGCCTGCGCCCTACCACACCTTCCAGACACCCCCGGAAGTGAAATAGGAACCCGCCATGAACGGCCTGTCg                                                                                  <  2:166668/149‑1 (MQ=255)
                                                                  tcaAGTGCATCCGCGGTGGCGCGCCGGCACCGGCCAAACCCTGGGATGGCGCCGAGGGCCTTGAGTGGTCGATACCCTCGCCTGCGccc                                                                                                                                              >  1:220168/1‑89 (MQ=255)
                                                                  tcaAGTGCATCCGCGGTGGCGCGCCGGCACCGGCCAAACCCTGGGATGGCGCCGAGGGCCTTGAGTGGTCGATACCCTCGCCTGCGccc                                                                                                                                              <  2:220168/89‑1 (MQ=255)
                                                                  tcaAGTGCATCCGCGGTGGCGCGCCGGCACCGGCCAAACCCTGGGATGGCGCCGAGGGCCTTGAGTGGTCGATACCCTCGCCTGCGCCCTACCACACCTTCCAGACACCCCCGGAAGTGAAATAGGAACCCGCCATGAACGGCCTGTCg                                                                                  >  6:237351/1‑149 (MQ=255)
                                                                  tcaAGTGCATCCGCGGTGGCGCGCCGGCACCGGCCAAACCCTGGGATGGCGCCGAGGGCCTTGAGTGGTCGATACCCTCGCCTGCGCCCTACCACACCTTCCAGACACCCCCGGAAGTGAAATAGGAACCCGCCATGAACGGCCTGTCg                                                                                  >  6:241605/1‑149 (MQ=255)
                                                                    aaGTGCATCCGCGGTGGCGCGCCGGCACCGGCCAAACCCTGGGATGGCGCCGAGGGCCTTGAGTGGTCGATACCCTCGCCTGCGCCCTACCACACCTTCCAGACACCCCCGGAAGTGAAATAGGAACCCGCCATGAACGGCCTGTCgg                                                                                 <  1:137170/148‑1 (MQ=255)
                                                                    aaGTGCATCCGCGGTGGCGCGCCGGCACCGGCCAAACCCTGGGATGGCGCCGAGGGCCTTGAGTGGTCGATACCCTCGCCTGCGCCCTACCACACCTTCCAGACACCCCCGGAAGTGAAATAGGAACCCGCCATGAACGGCCTGTCgg                                                                                 <  2:73135/148‑1 (MQ=255)
                                                                         cATCCGCGGTGGCGCGCCGGCACCGGCCAAACCCTGGGATGGCGCCGAGGGCCTTGAGTGGTCGATACCCTCGCCTGCGCCCTACCACACCTTCCAGACACCCCCGGAAGTGAAATAGGAACCCGCCATGAACGGCCTGTCGGTGAAAc                                                                           >  1:138385/1‑149 (MQ=255)
                                                                           tCCGCGGTGGCGCGCCGGCACCGGCCAAACCCTGGGATGGCGCCGAGGGCCTTGAGTGGTCGATACCCTCGCCTGCGCCCTACCACACCTTCCAGACACCCCCGGAAGTGAAATAGGAACCCGCCATGAACGGCCTGTCGGTGAAACGc                                                                         >  2:268310/1‑149 (MQ=255)
                                                                             cgcgGTGGCGCGCCGGCACCGGCCAAACCCTGGGATGGCGCCGAGGGCCTTGAGTGGTCGATACCCTCGCCTGCGCCCTACCACACCTTCCAGACACCCCCGGAAGTGAAATAGGAACCCGCCATGAACGGCCTGTCGGTGAAACGCCt                                                                       <  1:268310/149‑1 (MQ=255)
                                                                               cgGTGGCGCGCCGGCACCGGCCAAACCCTGGGATGGCGCCGAGGGCCTTGAGTGGTCGATACCCTCGCCTGCGCCCTACCACACCTTCCAGACACCCCCGGAAGTGAAATAGGAACCCGCCATGAACGGCCTGTCGGTGAAACGCCTgg                                                                     <  5:241605/149‑1 (MQ=255)
                                                                               cgGTGGCGCGCCGGCACCGGCCAAACCCTGGGATGGCGCCGAGGGCCTTGAGTGGTCGATACCCTCGCCTGCGCCCTACCACACCTTCCAGACACCCCCGGAAGTGAAATAGGAACCCGCCATGAACGGCCTGTCGGTGAAACGCCTgg                                                                     <  5:237351/149‑1 (MQ=255)
                                                                                     cgcgcCGGCACCGGCCAAACCCTGGGATGGCGCCGAGGGCCTTGAGTGGTCGATACCCTCGCCTGCGCCCTACCACACCTTCCAGACACCCCCGGAAGTGAAATAGGAACCCGCCATGAACGGCCTGTCGGTGAAACGCCTGGTAAcgc                                                               >  5:208105/1‑149 (MQ=255)
                                                                                       cgcCGGCACCGGCCAAACCCTGGGATGGCGCCGAGGGCCTTGAGTGGTCGATACCCTCGCCTGCGCCCTACCACACCTTCCAGACACCCCCGGAAGTGAAATAGGAACCCGCCATGAACGGCCTGTCGGTGAAACGCCTGGTAACgcgc                                                             >  7:91327/1‑149 (MQ=255)
                                                                                       cgcCGGCACCGGCCAAACCCTGGGATGGCGCCGAGGGCCTTGAGTGGTCGATACCCTCGCCTGCGCCCTACCACACCTTCCAGACACCCCCGGAAGTGAAATAGGAACCCGCCATGAACGGCCTGTCGGTGAAACGCCTGGTAACgcgc                                                             >  1:236848/1‑149 (MQ=255)
                                                                                             cACCGGCCAAACCCTGGGATGGCGCCGAGGGCCTTGAGTGGTCGATACCCTCGCCTGCGCCCTACCACACCTTCCAGACACCCCCGGAAGTGAAATAGGAACCCGCCATGAACGGCCTGTCGGTGAAACGCCTGGTAACGCGCCTGTTg                                                       <  1:146263/149‑1 (MQ=255)
                                                                                                cGGCCAAACCCTGGGATGGCGCCGAGGGCCTTGAGTGGTCGATACCCTCGCCTGCGCCCTACCACACCTTCCAGACAccccc                                                                                                                       <  4:92137/82‑1 (MQ=255)
                                                                                                    cAAACCCTGGGATGGCGCCGAGGGCCTTGAGTGGTCGATACCCTCGCCTGCGCCCTACCACACCTTCCAGACACCCCCGGAAGTGAAATAGGAACCCGCCATGAACGGCCTGTCGGTGAAACGCCTGGTAACGCGCCTGTTGATGCTGa                                                <  6:76877/149‑1 (MQ=255)
                                                                                                        cccTGGGATGGCGCCGAGGGCCTTGAGTGGTCGATACCCTCGCCTGCGCCCTACCACACCTTCCAGACACCCCCGGAAGTGAAATAGGAACCCGCCATGAACGGCCTGTc                                                                                   >  1:14260/1‑110 (MQ=255)
                                                                                                        cccTGGGATGGCGCCGAGGGCCTTGAGTGGTCGATACCCTCGCCTGCGCCCTACCACACCTTCCAGACACCCCCGGAAGTGAAATAGGAACCCGCCATGAACGGCCTGTc                                                                                   <  2:14260/110‑1 (MQ=255)
                                                                                                         ccTGGGATGGCGCCGAGGGCCTGTAGTGGTCGATACCCTCGCCTgcgccatcccagggtttggccggtgccggcgcgccaccgcggatgcactggatgacaatgaacaggaagaagatctgcgaggcgccgaacatgaacgcgccgat                                            <  7:169045‑M2/148‑105 (MQ=255)
                                                                                                              gATGGCGCCGAGGGCCTTGAGTGGTCGATACCCTCGCCTGCGCCCTACCACACCTTCCAGACACCCCCGGAAGTGAAATAGGAACCCGCCATGAACGGCCTGTCGGTGAAACGCCTGGTAACGCGCCTGTTGATGCTGACGGTGGTGAt                                      <  2:236848/149‑1 (MQ=255)
                                                                                                              gATGGCGCCGAGGGCCTTGAGTGGTCGATACCCTCGCCTGCGCCCTACCACACCTTCCAGACACCCCCGGAAGTGAAATAGGAACCCGCCATGAACGGCCTGTCGGTGAAACGCCTGGTAACGCGCCTGTTGATGCTGACGGTGGTGAt                                      >  1:261605/1‑149 (MQ=255)
                                                                                                               aTGGCGCCGAGGGCCTTGAGTGGTCGATACCCTCGCCTgtgccatcccagggtttggccggtgccggcgcgccaccgcggatgcacttgatgacaatgaacaggaagaagatctgcgtggcgccgaacatgaacgcgccgatcgacga                                      <  2:210779‑M2/148‑111 (MQ=255)
                                                                                                                   cgcCGAGGGCCTTGAGTGGTCGATACCCTCGCCTgcgccatcccagggtttggccggtgccggcgcgccaccgcggatgcacttgatgacaatgaacaggaagaagatctgcgtggcgccgaacatgaacgcgccgatcgacgacacca                                 <  7:162491‑M2/149‑116 (MQ=255)
                                                                                                                   cgcCGAGGGCCTTGAGTGGTCGATACCCTCGCCTGCGCCCTACCACACCTTCCAGACACCCCCTGAAGTGAAATAGGAACCCGCCATGAACGGCCTGTCGGTGAAACGCCTGGTAACGCGCCTGTTGATGCTGACGGTGGTGATGTTCg                                 >  7:199153/1‑149 (MQ=255)
                                                                                                                    gcCGAGGGCCTTGAGTGGTCGATACCCTCGCCTGCGCCCTACCACACCTTCCAGACACCCCCGGAAGTGAAATAGGAACCCGCCATGAACGGCCTGTCGGTGAAACGCCTGGTAACGCGCCTGTTGATGCTGACGGTGGTGATGTTCGc                                >  1:13045/1‑149 (MQ=255)
                                                                                                                     gcgtggggCTTGAGTGGTCGTTACCCTCGCCTGCGCCCTACCACACCTTCCAGAGACCCCCGGAAGTGAAATAGGAACCCGCCATGAACGGCCTGTCGGTGAAACGCCTGGTAACGCGCCTGTTGATGCTGACGGTGTTGATGTTCGcc                               <  2:261605/145‑1 (MQ=255)
                                                                                                                       gAGGGCCTTGAGTGGTCGATACCCTCGCCTGCGCCCTACCACACCTTCCAGACACCCCCGGAAGTGAAATAGGAACCCGCCATGAACGGCCTGTCGGTGAAACGCCTGGTAACGCGCCTGTTGATGCTGACGGTGGTGATGTTCGCCtt                             >  3:32956/1‑149 (MQ=255)
                                                                                                                         gggCCTTGAGTGGTCGATACCCTCGCCTgtgccatcccagggtttggccggtgccggcgcgccaccgcggatgcacttgatgacaatgaacaggaagaagatctgcgtggcgccgaacatgaacgcgccgatcgacgacaccatgttga                           >  1:210779‑M2/1‑28 (MQ=255)
                                                                                                                         gggCCTTGAGTGGTCGATACCCTCGCCTGCGCCCTACCACACCTTCCAGACACCCCCGGAAGTGAAATAGGAACCCGCCATGAACGGCCTGTCGGTGAAACGCCTGGTAACGCGCCTGTTGATGCTGACGGTGGTGATGTTCGCCTTCg                           <  6:208105/149‑1 (MQ=255)
                                                                                                                          ggCCTTGAGTGGTCGATACCCTCGCCTGCGCCCTACCACACCTTCCAGACACCCCCGGAAGTGAAATAGGAACCCGCCATGAACGGCCTGTCGGTGAAACGCCTGGTAACGCGCCTGTTGATGCTGACGGTGGTGATGTTCGCCTTCgg                          <  4:32956/149‑1 (MQ=255)
                                                                                                                             cTTGAGTGGTCGATACCCTCGCCTGCGCCCTACCACACCTTCCAGACACCCCCGGAAGTGAAATAGGAACCCGCCATGAACGGCCTGTCGGTGAAACGCCTGGTAACGCGCCt                                                           >  2:166990/1‑113 (MQ=255)
                                                                                                                             cTTGAGTGGTCGATACCCTCGCCTGCGCCCTACCACACCTTCCAGACACCCCCGGAAGTGAAATAGGAACCCGCCATGAACGGCCTGTCGGTGAAACGCCTGGTAACGCGCCt                                                           <  1:166990/113‑1 (MQ=255)
                                                                                                                             cTTGAGTGGTCGATACCCTCGCCTGCGCCCTACCACACCTTCCAGACACCCCCGGAAGTGAAATAGGAACCCGCCATGAACGGCCTGTCGGTGAAACGCCTGGTAACGCGCCTGTTGATGCTGACGGTGGTGATGTTCGCCTTCGGCtt                       >  5:164153/1‑149 (MQ=255)
                                                                                                                                gAGTGGTCGATACCCTCGCCTGCGCCCTACCACACCTTCCAGACACCCCCGGAAGTGAAATAGGAACCCGCCATGAACGGCCTGTCGGTGAAACGCCTGGTAACGCGCCTGTTGATGCTGACGGTGGTGATGTTCGCCTTCGGCTTcgc                    >  2:5007/1‑149 (MQ=255)
                                                                                                                                     gTCGATACCCTCGCCTGCGCCCTACCACACCTTCCAGACACCCCCGGAAGTGAAATAGGAACCCGCCATGAACGGCCTGTCGGTGAAACGCCTGGTAACGCGCCTGTTGATGCTGACGGTGGTGATGTTCGCCTTCGGCTTCGCGCTgg               >  1:116133/1‑149 (MQ=255)
                                                                                                                                      tCGATACCCTCGCCTGCGCCCTACCACACCTTCCAGACACCCCCGGAAGTGAAATAGGAACCCGCCATGAACGGCCTGTCGGTGCAACGCCTGGTAACGCGCCTGTTGATGCTCACCGTGGAGATGTTCGCCTTCGGCTTCGCGCTGGt              >  5:265705/1‑149 (MQ=255)
                                                                                                                                        gATACCCTCGCCTGCGCCCTACCACACCTTCCAGACACCCCCGGAAGTGAAATAGGAACCCGCCATGAACGGCCTGTCGGTGAAACGCCTGGTAACGCGCCTGTTGATGCTGACGGTGGTGATGTTCGCCTTCGGCTTCGCGCTGGTGc            >  6:141503/1‑149 (MQ=255)
                                                                                                                                             ccTCGCCTGCGCCCTACCACACCTTCCAGACACCCCCGGAAGTGAAATAGGAACCCGCCa                                                                                                <  1:154966/60‑1 (MQ=255)
                                                                                                                                             ccTCGCCTGCGCCCTACCACACCTTCCAGACACCCCCGGAAGTGAAATAGGAACCCGCCa                                                                                                >  2:154966/1‑60 (MQ=255)
                                                                                                                                             ccTCGCCTGCGCCCTACCACACCTTCCAGACACCCCCGGAAGTGAAATAGGAACCCGCCATGAACGGCCTGTCGGTGAAACGCCTGGTAACGCGCCTGTTGATGCTGACGGTGGTGATGTTCGCCTTCGGc                         >  8:103442/1‑131 (MQ=255)
                                                                                                                                              atCGCCTGCGCCCTACCACACCTTCCAGACACCACCGGAAGTGAAATAGGAACCCGCCATGAACTGACTGTCGGTGAAACGCCTGGTAACGCGCCTGTTGATGATGAAGGTGGTGATGTTCGCCTTCGGCTTCGCGCTGGTGCCGATc       >  4:82064/2‑148 (MQ=255)
                                                                                                                                                  ccTGCGCCCTACCACACCTTCCAGACACCCCCGGAAGTGAAATAGGAACCCGCCATGAACGGCCTGTCGGTGAAACGCCTGGTAACGCGCCTGTTGATGCTGACGGTGGTGATGTTCGCCTTCGGCTTCGCGCTGGTGCCGATCTacga  >  6:125487/1‑149 (MQ=255)
                                                                                                                                                    |                                                                                                                                                  
ACATGGTGTCGTCGATCGGCGCGTTCATGTTCGGCGCCACGCAGATCTTCTTCCTGTTCATTGTCATCAAGTGCATCCGCGGTGGCGCGCCGGCACCGGCCAAACCCTGGGATGGCGCCGAGGGCCTTGAGTGGTCGATACCCTCGCCTGCGCCCTACCACACCTTCCAGACACCCCCGGAAGTGAAATAGGAACCCGCCATGAACGGCCTGTCGGTGAAACGCCTGGTAACGCGCCTGTTGATGCTGACGGTGGTGATGTTCGCCTTCGGCTTCGCGCTGGTGCCGATCTACGA  >  NC_002947/111380‑111674

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.