New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 173113NA (NA)3 (0.070) 3/246 NT 100% intergenic (+203/‑90) PP_16SA/PP_23SA 16S ribosomal RNA/23S ribosomal RNA
?NC_002947 = 173155 0 (0.000)intergenic (+245/‑48) PP_16SA/PP_23SA 16S ribosomal RNA/23S ribosomal RNA

AAGACGTTTTTCCTGGTCAGAACCTGGAAATGAGCATTCGCATCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTaaaatt‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/172967‑173113
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAAATTCGTACGTTGCTCTTTCGAGCAGAACTCACAAATTTTACCTTAGCCTGATCCACCAGCAGTGAAACTGGTGTTCAGTCTATATCTATCACATATCCGAATTTTTAAAGAACGATCTGACAAAAGCCAGAAATCAACATTCGATGCGAA  <  NC_002947/173155‑173003
                                                                                                                                                                                                                                                                                                            
AAGACGTTTTTCCTGGTCAGAACCTGGAAATGAGCATTCGCATCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTA                                                                                                                                                          >  1:149055/1‑148
  GACGTTTTTCCTGGTCAGAACCTGGAAATGAGCATTCGTATCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAA                                                                                                                                                       <  2:63237/149‑1
  GACGTTTTTCCTGGTCAGAACCTGGAAATGAGCATTCGCATCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAA                                                                                                                                                       <  7:155975/149‑1
  GACGTTTTTCCTGGTCAGAACCTGGAAATGAGCATTCGCATCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAA                                                                                                                                                       <  6:178894/149‑1
  GACGTTTTTCCTGGTCAGAACCTGGAAATGAGCATTCGCATCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAA                                                                                                                                                       <  3:90669/149‑1
   ACGTTTTTCCTGGTCAGAACCTGGAAATGAGCATTCGTATCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAAT                                                                                                                                                      <  5:37157/149‑1
    CGTTTTTCCTGGTCAGAACCTGGAAATGAGCATTCGCATCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATACACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAAT                                                                                                                                                      <  1:189278/148‑1
         TTCCTGGTCAGAACCTGGAAATGAGCATTCGTATCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTCGTAC                                                                                                                                                >  6:235979/1‑149
                                                 TTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTCGTACGTTGCTCTTTCGAGCAGAACTCACAAATTTTACCTTAGC                                                                                                         <  5:235979/148‑1
                                                     TTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTCGTACGTTGCTCTTTCGAGCAGAACTCACAAATTTTACC                                                                                                              <  4:168172/139‑1
                                                     TTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTCGTACGTTGCTCTTTCGAGCAGAACTCACAAATTTTACC                                                                                                              >  3:168172/1‑139
                                                                                                                                                   AAAATTCGTACGTTGCTCTTTCGAGCAGAACTCACAAATTTTACCTTAGCCTGATCCACCAGCAGTGAAACTGGTGTTCAGTCTATATCTATCACATATCCGAATTTTTAAAGAACGATCTGACAAAAGCCAGAAATCAACATTCGATa      <  2:86654/149‑2
                                                                                                                                                   AAAATTCGTACGTTGCTCTTTCGAGAAGAACTCACAAATTTTACCTTAGCATGATCCACCAGCAGTGAAACTGGTGTTCAGTCTATATCTATCACATATCCGAATTTTTAAAGAACGATCTGACAAAAGCCAGAAATGAACATTCagct      <  7:97532/149‑5
                                                                                                                                                     AATTCGTACGTTGCTCTTTCGAGCAGAACTCACAAATTTTACCTTAGCCTGATCCACCAGCAGTGAAACTGGTGTTCAGTCTATATCTATCACATATCCGAATTTTTAAAGAACGATCTGACAAAAGC                         >  5:94340/1‑128
                                                                                                                                                     AATTCGTACGTTGCTCTTTCGAGCAGAACTCACAAATTTTACCTTAGCCTGATCCACCAGCAGTGAAACTGGTGTTCAGTCTATATCTATCACATATCCGAATTTTTAAAGAACGATCTGACAAAAGC                         <  6:94340/128‑1
                                                                                                                                                       TTCGTACGTTGCTCTTTCGAGCAGAACTCACAAATTTTACCTTAGCCTGATCCACCAGCAGTGAAACTGGTGTTCAGTCTATATCTATCACATATCCGAATTTTTAAAGAACGATCTGACAAAAGCCAGAAATCAACATTCGATGCGAA  <  4:110128/149‑1
                                                                                                                                                       TTCGTACGTTGCTCTTTCGAGCAGAACTCACAAATTTTACCTTAGCCTGATCCACCAGCAGTGAAACTGGTGTTCAGTCTATATCTATCACATATCCGAATTTTTAAAGAACGATCTGACAAAAGCCAGAAATCAACATTCGATGCGAA  >  5:68472/1‑149
                                                                                                                                                       TTCGTACGTTGCTCTTTCGAGCAGAACTCACAAATTTTACCTTAGCCTGATCCACCAGCAGTGAAACTGGTGTTCAGTCTATATCTATCACATATCCGAATTTTTAAAGAACGATCTGACAAAAGCCAGAAATCAACATTCGATGCGAA  <  7:54493/149‑1
                                                                                                                                                       TTCGTACGTTGCTCTTTCGAGCAGAACTCACAAATTTTACCTTAGCCTGATCCACCAGCAGTGAAACTGGTGTTCAGTCTATATCTATCACATATCCGAATTTTTAAAGAACGATCTGACAAAAGCCAGAAATCAACATTCGATGCGAA  <  7:58046/149‑1
                                                                                                                                                                                                                                                                                                            
AAGACGTTTTTCCTGGTCAGAACCTGGAAATGAGCATTCGCATCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTaaaatt‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/172967‑173113
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAAATTCGTACGTTGCTCTTTCGAGCAGAACTCACAAATTTTACCTTAGCCTGATCCACCAGCAGTGAAACTGGTGTTCAGTCTATATCTATCACATATCCGAATTTTTAAAGAACGATCTGACAAAAGCCAGAAATCAACATTCGATGCGAA  <  NC_002947/173155‑173003

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.