| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 173113 | NA (NA) | 3 (0.070) | 3/246 | NT | 100% | intergenic (+203/‑90) | PP_16SA/PP_23SA | 16S ribosomal RNA/23S ribosomal RNA |
| ? | NC_002947 | = 173155 | 0 (0.000) | intergenic (+245/‑48) | PP_16SA/PP_23SA | 16S ribosomal RNA/23S ribosomal RNA | |||||
CATCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGAAAGAGCAACGTACGAATTTTCGGCGAATGTCGTCTTCACAGTATAACCAGATTGCTTGGGGTTATATGGTCAAGTGAAGAAGCGCATACGGTGGATGCCTTGGCAGTCAGAGGCGATGAAAGACGTGGTAGCCTGCGATAAGCTTTGGGGAGTCGGCAAACAGACTG > NC_002947/173007‑173302 | tatCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGAAAGAGCAACGTACGAATTTT < 2:86654‑M2/148‑1 (MQ=255)agctgaatgTTCATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCATGCTAAGGTAAAATTTGTGAGTTCTTCTCGAAAGAGCAACGTACGAATTTT < 7:97532‑M2/145‑1 (MQ=255) gCTAAGGTAAAATTTGTGAGTTCTGCTCGAAAGAGCAACGTACGAATTTTaccttagcctgatccaccagcagtgaaactggtgttcagtctatatctatcacatatccgaatttttaaagaacgatctgacaaaagccagaaatcaa < 5:235979‑M2/148‑99 (MQ=255) ggTAAAATTTGTGAGTTCTGCTCGAAAGAGCAACGTACGAATTTTaccttagcctgatccaccagcagtgaaactggtgttcagtctatatctatcacatatccgaatttttaaagaacgatctgacaaaagccagaaa > 3:168172‑M2/1‑45 (MQ=255) ggTAAAATTTGTGAGTTCTGCTCGAAAGAGCAACGTACGAATTTTaccttagcctgatccaccagcagtgaaactggtgttcagtctatatctatcacatatccgaatttttaaagaacgatctgacaaaagccagaaa < 4:168172‑M2/139‑95 (MQ=255) gTACGAATTTTaccttagcctgatccaccagcagtgaaactggtgttcagtctatatctatcacatatccgaatttttaaagaacgatctgacaaaagccagaaatcaacattcgatacgaatgctcatttccaggttctgaccaggaa > 6:235979‑M2/1‑11 (MQ=255) aTTTTaccttagcctgatccaccagcagtgaaactggtgttcagtgtatatctatcacatatccgaatttttaaagaacgatctgacaaaagccagaaatcaacattcgatgcgaatgctcatttccaggttctgaccaggaaaaacg < 1:189278‑M2/148‑144 (MQ=255) aTTTTaccttagcctgatccaccagcagtgaaactggtgttcagtctatatctatcacatatccgaatttttaaagaacgatctgacaaaagccagaaatcaacattcgatacgaatgctcatttccaggttctgaccaggaaaaacgt < 5:37157‑M2/149‑145 (MQ=255) ttttaccttagcctgatccaccagcagtgaaactggtgttcagtctatatctatcacatatccgaatttttaaagaacgatctgacaaaagccagaaatcaacattcgatgcgaatgctcatttccaggttctgaccaggaaaaacgtc < 3:90669‑M2/149‑146 (MQ=255) ttttaccttagcctgatccaccagcagtgaaactggtgttcagtctatatctatcacatatccgaatttttaaagaacgatctgacaaaagccagaaatcaacattcgatgcgaatgctcatttccaggttctgaccaggaaaaacgtc < 6:178894‑M2/149‑146 (MQ=255) ttttaccttagcctgatccaccagcagtgaaactggtgttcagtctatatctatcacatatccgaatttttaaagaacgatctgacaaaagccagaaatcaacattcgatgcgaatgctcatttccaggttctgaccaggaaaaacgtc < 7:155975‑M2/149‑146 (MQ=255) ttttaccttagcctgatccaccagcagtgaaactggtgttcagtctatatctatcacatatccgaatttttaaagaacgatctgacaaaagccagaaatcaacattcgatacgaatgctcatttccaggttctgaccaggaaaaacgtc < 2:63237‑M2/149‑146 (MQ=255) taccttagcctgatccaccagcagtgaaactggtgttcagtctatatctatcacatatccgaatttttaaagaacgatctgacaaaagccagaaatcaacattcgatgcgaatgctcatttccaggttctgaccaggaaaaacgtctt > 1:149055‑M2/1‑1 (MQ=255) | CATCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGAAAGAGCAACGTACGAATTTTCGGCGAATGTCGTCTTCACAGTATAACCAGATTGCTTGGGGTTATATGGTCAAGTGAAGAAGCGCATACGGTGGATGCCTTGGCAGTCAGAGGCGATGAAAGACGTGGTAGCCTGCGATAAGCTTTGGGGAGTCGGCAAACAGACTG > NC_002947/173007‑173302 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |