| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 173113 | NA (NA) | 3 (0.070) | 3/246 | NT | 100% | intergenic (+203/‑90) | PP_16SA/PP_23SA | 16S ribosomal RNA/23S ribosomal RNA |
| ? | NC_002947 | = 173155 | 0 (0.000) | intergenic (+245/‑48) | PP_16SA/PP_23SA | 16S ribosomal RNA/23S ribosomal RNA | |||||
TTCGCATCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGAAAGAGCAACGTACGAATTTTCGGCGAATGTCGTCTTCACAGTATAACCAGATTGCTTGGGGTTATATGGTCAAGTGAAGAAGCGCATACGGTGGATGCCTTGGCAGTCAGAGGCGATG > NC_002947/173003‑173253 | ttCGCATCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGAAAGAGCAACGTACGAA < 4:110128‑M2/149‑1 (MQ=255)ttCGCATCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGAAAGAGCAACGTACGAA > 5:68472‑M2/1‑149 (MQ=255)ttCGCATCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGAAAGAGCAACGTACGAA < 7:54493‑M2/149‑1 (MQ=255)ttCGCATCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGAAAGAGCAACGTACGAA < 7:58046‑M2/149‑1 (MQ=255) tatCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGAAAGAGCAACGTACGAATTTT < 2:86654‑M2/148‑1 (MQ=255) agctgaatgTTCATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCATGCTAAGGTAAAATTTGTGAGTTCTTCTCGAAAGAGCAACGTACGAATTTT < 7:97532‑M2/145‑1 (MQ=255) gCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGAAAGAGCAACGTACGAATT > 5:94340‑M2/1‑128 (MQ=255) gCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGAAAGAGCAACGTACGAATT < 6:94340‑M2/128‑1 (MQ=255) gCTAAGGTAAAATTTGTGAGTTCTGCTCGAAAGAGCAACGTACGAATTTTaccttagcctgatccaccagcagtgaaactggtgttcagtctatatctatcacatatccgaatttttaaagaacgatctgacaaaagccagaaatcaa < 5:235979‑M2/148‑99 (MQ=255) ggTAAAATTTGTGAGTTCTGCTCGAAAGAGCAACGTACGAATTTTaccttagcctgatccaccagcagtgaaactggtgttcagtctatatctatcacatatccgaatttttaaagaacgatctgacaaaagccagaaa > 3:168172‑M2/1‑45 (MQ=255) ggTAAAATTTGTGAGTTCTGCTCGAAAGAGCAACGTACGAATTTTaccttagcctgatccaccagcagtgaaactggtgttcagtctatatctatcacatatccgaatttttaaagaacgatctgacaaaagccagaaa < 4:168172‑M2/139‑95 (MQ=255) | TTCGCATCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGAAAGAGCAACGTACGAATTTTCGGCGAATGTCGTCTTCACAGTATAACCAGATTGCTTGGGGTTATATGGTCAAGTGAAGAAGCGCATACGGTGGATGCCTTGGCAGTCAGAGGCGATG > NC_002947/173003‑173253 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |