New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	383361 =	33 (0.780)	5 (0.130)	5/232	NT	13.6%	intergenic (+21/‑162)	PP_0319/PP_0320	hypothetical protein/methyl‑accepting chemotaxis transducer
	?	NC_002947	383431 =	34 (0.900)					intergenic (+91/‑92)	PP_0319/PP_0320	hypothetical protein/methyl‑accepting chemotaxis transducer

CCCTACTCCCCGCACATTATTGTTTTGCGGAAAGTGTATACACTTGCGTATCCAGTTAATCCAGTGATCTGAAGCAATCAGATGCACCCTGTAGGAGCGGGTTTACCCGCGAATGCGGTGTTGAAGCCACTGACGCATTCGCGGGTGAACCCGCTCCTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/383520‑383361 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aacccgctcctacAGGGTGCATCTGATTGCTTCAGATCACTGGATTAACTGGATACGCAAGTGTATACACTTTCCGCAAAACAATAATGTGCGGGGAGTAGGGGCATGCGTATCTGGCGTAAGAGCATCCAGTTGCAATTGATCACCAGCATGGGCGC  >  NC_002947/383431‑383575                                                                                                                                                                                                                                                                                                                   CCCTACTCCCCGCACATTATTGTTTTGCGGAAAGTGTATACACTTGCGTATCCAGTTAATCCAGTGATCTGAAGCAATCAGATGCACCCTGTAGGAGCGGGTTTACCCGCGAATGCGGTGTTGAAGCCACTGACGCATTCGCGGGTGAA                                                                                                                                                              >  2:116075/1‑149     ACTCCCCGCACATTATTGTTTTGCGGAAAGTGTATACACTTGCGTATCCAGTTAATCCAGTGATCTGAAGCAATCAGATGCACCCTGTAGGAGCGGGTTTACCCGCGAATGCGGTGTTGAAGCCACTGACGCATTCGCGGGTGAACCCG                                                                                                                                                          >  4:84896/1‑149      CTCCCCGCACATTTTTGTTTTGCGGAAAGTGTATACACTTGCGTATCCAGTTAATCCAGTGATCTGAAGCAATCAGATGCACCCTGTAGGAGCGGGTTTACCCGCGAATGCGGTGTTGAAGCCACTGACGCATTCGCGGGTGAACCC                                                                                                                                                           <  3:49129/147‑1      CTCCCCGCACATTATTGTTTTGCGGAAAGTGTATACACTTGCGTATCCAGTTAATCCAGTGATCTGAAGCAATCAGATGCACCCTGTAGGAGCGGGTTTACCCGCGAATGCGGTGTTGAAGCCACTGACGCATTCGCGGGTGAACCCGC                                                                                                                                                         <  8:30041/149‑1         CCCGCACATTATTGTTTTGCGGAAAGTGTATACACTTGCGTATCCAGTTAATCCAGTGATCTGAAGCAATCAGATGCACCCTGTAGGAGCGGGTTTACCCGCGAATGCGGTGTTGAAGCCACTGACGCATTCGCGGGTGAAC                                                                                                                                                             <  1:33705/142‑1         CCCGCACATTATTGTTTTGCGGAAAGTGTATACACTTGCGTATCCAGTTAATCCAGTGATCTGAAGCAATCAGATGCACCCTGTAGGAGCGGGTTTACCCGCGAATGCGGTGTTGAAGCCACTGACGCATTCGCGGGTGAAC                                                                                                                                                             >  2:33705/1‑142          CCGCACATTATTGTTTTGCGGAAAGTGTATACACTTGCGTATCCAGTTAATCCAGTGATCTGAAGCAATCAGATGCACCCTGTAGGAGCGGGTTTACCCGCGAATGCGGTGTTGAAGCCACTGACGCATTCGCGGGTGAACCCGCTCC                                                                                                                                                      >  5:243659/1‑148          CCGCACATTATTGTTTTGCGGAAAGTGTATACACTTGCGTATCCAGTTAATCCAGTGATCTGAAGCAATCAGATGCACCCTGTAGGAGCGGGTTTACCCGCGAATGCGGTGTTGAAGCCACTGACGCATTCGCGGGTGAAC                                                                                                                                                             <  5:23774/141‑1          CCGCACATTATTGTTTTGCGGAAAGTGTATACACTTGCGTATCCAGTTAATCCAGTGATCTGAAGCAATCAGATGCACCCTGTAGGAGCGGGTTTACCCGCGAATGCGGTGTTGAAGCCACTGACGCATTCGCGGGTGAAC                                                                                                                                                             >  6:23774/1‑141                                                                                                    GGTTTACCCGCGAATGCGGTGTTGAAGCCACTGACGCATTCGCGGGTGAACCCGCTCCTACAGGGTGCATCTGATTGCTTCAGATCACTGGATTAACTGGATACGCAAGTGTATACACTTTCCGCAAA                                                                                <  5:3443/128‑1                                                                                                    GGTTTACCCGCGAATGCGGTGTTGAAGCCACTGACGCATTCGCGGGTGAACCCGCTCCTACAGGGTGCATCTGATTGCTTCAGATCACTGGATTAACTGGATACGCAAGTGTATACACTTTCCGCAAA                                                                                >  6:3443/1‑128                                                                                                     GTTTACCCGCGAATGCGGTGTTGAAGCCACTGACGCATTCGCGGGTAAACCCGCTCCTACAGGGTGCATCTGATTGCTTCAGATCACTGGATTAACTGGATACGCAAGTGTATACACTTTCCGCATAACAATAATGTGCGGGGAGTAGG                                                          >  7:198377/1‑149                                                                                                           CCGCGAATGCGGTGTTGAAGCCACTGACGCATTCGCGGGTGAACCCGCTCCTACAGGGTGCATCTGATTGCTTCAGATCA                                                                                                                         <  1:156949/80‑1                                                                                                           CCGCGAATGCGGTGTTGAAGCCACTGACGCATTCGCGGGTGAACCCGCTCCTACAGGGTGCATCTGATTGCTTCAGATCA                                                                                                                         >  2:156949/1‑80                                                                                                                                                       CCGCTCCTACAGGGTGCATCTGATTGCTTCAGATCACTGGATTAACTGGATACGCAAGTGTATACACTTTCCGCAAAACAATAATGTGCGGGGAGTAGGGGCATGCGTATCTGGCGTAAGAGCATCCAGTTGCAATTGATCACCAGCAT        >  4:183193/1‑149                                                                                                                                                             CTACAGGGTGCATCTGATTGCTTCAGATCACTGGATTAACTGGATACGCAAGTGTATACACTTTCCGCAAAACAATAATGTGCGGGGAGTAGGGGCATGCGTATCTGGCGTAAGAGCATCCAGTTGCAATTGATCACCAGCATGGGCGC  >  5:102379/1‑149                                                                                                                                                                                                                                                                                                                   CCCTACTCCCCGCACATTATTGTTTTGCGGAAAGTGTATACACTTGCGTATCCAGTTAATCCAGTGATCTGAAGCAATCAGATGCACCCTGTAGGAGCGGGTTTACCCGCGAATGCGGTGTTGAAGCCACTGACGCATTCGCGGGTGAACCCGCTCCTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/383520‑383361 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aacccgctcctacAGGGTGCATCTGATTGCTTCAGATCACTGGATTAACTGGATACGCAAGTGTATACACTTTCCGCAAAACAATAATGTGCGGGGAGTAGGGGCATGCGTATCTGGCGTAAGAGCATCCAGTTGCAATTGATCACCAGCATGGGCGC  >  NC_002947/383431‑383575

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.