| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 383361 = | 33 (0.780) | 5 (0.130) | 5/232 | NT | 13.6% | intergenic (+21/‑162) | PP_0319/PP_0320 | hypothetical protein/methyl‑accepting chemotaxis transducer |
| ? | NC_002947 | 383431 = | 34 (0.900) | intergenic (+91/‑92) | PP_0319/PP_0320 | hypothetical protein/methyl‑accepting chemotaxis transducer | |||||
AAGCGCAGATCGACGCCACGGTGGATGCCATCGTGCGGACCATCGCTGAGCAATAAGCCCCGTACACCGTCCCCCCGTAGGAGCGGGTTCACCCGCGAATGCGTCAGTGGCTTCAACACCGCATTCGCGGGTAAACCC‑GCTCCTACAGGGTGCATCTGATTGCTTCAGATCACTGGATTAACTGGATACGCAAGTGTATACACTTTCCGCAAAACAATAATGTGCGGGGAGTAGGGGCATGCGTATCTGGCGTAAGAGCATCCAGTTGCAATTGATCACCAGCATGGGCGCTGCC > NC_002947/383285‑383579 | aaGCGCAGATCGACGCCACGGTGGATGCCATCGTGCGGACCATCGCTGAGCAATAAGCCCCGTACACCGTCCCCCCGTAGGAGCGGGTTCACCCGCGAATGCGTCAGTGGCTTCAACACCGCATTCGCGGGCAAACCC‑GCTCCTACAgg > 3:215549/1‑149 (MQ=255) gcAGATCGACGCCACGGTGGATGCCATCGTGCGGACCATCGCTGAGCAATAAGCCCCGTACACCGTCCCCCCGTAGGAGCGGGTTCACCCGCGAATGCGTCAGTGGCTTCAACACCGCATTCGCGGGTAAACCC‑GCTCCTACAGGGTg > 3:26931/1‑148 (MQ=255) gcAGATCGACGCCACGGTGGATGCCATCGTGCGGACCATCGCTGAGCAATAAGCCCCGTACACCGTCCCCCCGTAGGAGCGGGTTCACCCGCGAATGCGTCAGTGGCTTCAACACCGCATTCGCGGGTAAACCC‑GCTCCTACAGGGTg > 2:73791/1‑148 (MQ=255) aCGCCACGGTGGATGCCATCGTGCGGACCATCGCTGAGCAATAAGCCCCGTACACCGTCCCCCCGTAGGAGCGGGTTCACCCGCGAATGCGTCAGTGGCTTCAACACCGCATTCGCGGGCAAACCC‑GCTCCTACAGGGTGCATCTGAtt < 4:215549/149‑1 (MQ=255) cGGTGGATGCCATCGTGCGGACCATCGCTGAGCAATAAGCCCCGTACACCGTCCCCCCGTAGGAGCGGGTTCACCCGCGAATGCGTCAGTGGCTTCAACACCGCATTCGCGGGTAAACCC‑GCTCCTACAGGGTGCATCTGATTGCTTCa < 1:101673/149‑1 (MQ=255) ggTGGATGCCATCGTGCGGACCATCGCTGAGCAATAAGCCCCGTACACCGTCCCCCCGTAGGAGCGGGTTCAACCGCGAATGCGTCAGTGGCTTCAACCCCGCATTCGCGGGTAAACCC‑GCTCCTACAGGGTGCATCTGATTGCtt > 6:243659/1‑146 (MQ=255) tGCCATCGTGCGGACCATCGCTGAGCAATAAGCCCCGTACACCGTCCCCCCGTAGGAGCGGGTTCACCCGCGAATGCGTCAGTGGCTTCAACACCGCATTCGCGGGTAAACCC‑GCTCCTACAGGGTGCATCTGATTGCTTCAGATCACt < 4:173690/149‑1 (MQ=255) tCGCTGAGCAATAAGCCCCTTACACCGTCCCCCCGTAGGAGCGGGTTCACACTCGAATGAGTCAGTGGCTTCAACACCGCATTCGCGTGTAAACCC‑GCTCATACATGGTGCATCTGATTTCTTCAGATCACTGGATTAACTGGATACGc < 6:43027/149‑1 (MQ=255) cTGAGCAATAAGCCCCGTACACCGTCCCCCCGTAGGAGCGGGTTCACCCGCGAATGCGTCAGTGGCTTCAACACCGCATTCGCGGGTAAACCCAGCTCCTACAGGGTGCATCTGATTGCTTCAGATCACTGGATTAACTGGATACGCaa < 1:73791/149‑1 (MQ=255) aGCAATAAGCCCCGTACACCGTCCCCCCGTAGGAGCGGGTTCACCCGCGAATGCGTCAGTGGCTTCAACACCGCATTCGCGGGTAAACCC‑GCTCCTACAGGGTGCATCTGATTGCTTCAGATCACTGGATTAACTGGATACGCAAgt < 4:7953/147‑1 (MQ=255) aaTAAGCCCCGTACACCGTCCCCCCGTAGGAGCGGGTTCACCCGCGAATGCGTCAGTGGCTTCAACACCGCATTCGCGGGTAAACCC‑GCTCCTACAGGGTGCATCTGATTGCTTCAGATCACTGGATTAACTGGATACGCAAGTGtata < 8:69580/149‑1 (MQ=255) tCCCCCCGTAGGAGCGGGTTCACCCGCGAATGCGTCAGTGGCTTCAACACCGCATTCGCGGGTAAACCC‑GCTCCTACAGGGTGCATCTGAtt < 3:257821/92‑1 (MQ=255) ccGTAGGAGCGGGTTCACCCGCGAATGCGTCAGTGGCTTCAACACCGCATTCGCGGGTAAACCC‑GCTCCTACAGGGTGAATCTGATTGCTTCAGATCACTGGATTAACTGGATACGCAAGTGTATACACTTTCCGCAAAACAATAAtgt > 8:74421/1‑149 (MQ=255) ccGTAGGAGCGGGTTCACCCGCGAATGCCTCAGTGGCTTCAACACCGCATTCGCGGGTAAACCC‑GCTCCTACAGGGTGCATCTGATTGCTTCAGATCACTGGATTAACTGGATACGCAAGTGTATACACTTTCCGCAAAACAATAAtgt > 1:152219/1‑149 (MQ=255) GGAGCGGGTTCACCCGCGAATGCGTCAGTGGCTTCAACACCGCATTCGCGGGTAAACCC‑GCTCCTACAGGGTGCATCTGATTGCTTCAGATCACTGGATTAACTGGATACGCAAGTGTATACACTTTCCGCAAAACAATAATGTGCgg > 5:243659‑M1/1‑148 (MQ=255) GCGGGTTCACCCGCGAATGCGTCAGTGGCTTCAACACCGCATTCGCGGGTAAACCC‑GCTCCTACAGGGTGCATCTGATTGCTTCAGATCACTGGATTAACTGGATACGCAAGTGTATACACTTTCCGCAAAACAATAATGTGCGGGGAg < 8:30041‑M1/149‑1 (MQ=255) CGGGTTCACCCGCGAATGCGTCAGTGGCTTCAACACCGCATTCGCGGGTAAACCC‑GCTCCTACAGGGTGCATCTGATTGCTTCAGATCACTGGATTAACTGGATACGCAAGTGTATACACTTTCCGCAAAACAATAATGTGCGGGGAGt > 4:84896‑M1/1‑149 (MQ=255) GGGTTCACCCGCGAATGCGTCAGTGGCTTCAACACCGCATTCGCGGGTAAACCC‑GCTCCTACAGGGTGCATCTGATTGCTTCAGATCACTGGATTAACTGGATACGCAAGTGTATACACTTTCCGCAAAACAAAAATGTGCGGGGAg < 3:49129‑M1/147‑1 (MQ=255) ggtttacccgcgaatgcggtgttgaagccactgacgcattcgcgggtgaacccgctcctacAGGGTGCATCTGATTGCTTCAGATCACTGGATTAACTGGATACGCAAGTGTATACACTTTCCGCaaa > 6:3443‑M2/62‑128 (MQ=255) ggtttacccgcgaatgcggtgttgaagccactgacgcattcgcgggtgaacccgctcctacAGGGTGCATCTGATTGCTTCAGATCACTGGATTAACTGGATACGCAAGTGTATACACTTTCCGCaaa < 5:3443‑M2/67‑1 (MQ=255) GTTCACCCGCGAATGCGTCAGTGGCTTCAACACCGCATTCGCGGGTAAACCC‑GCTCCTACAGGGTGCATCTGATTGCTTCAGATCACTGGATTAACTGGATACGCAAGTGTATACACTTTCCGCAAAACAATAATGTGCggg < 1:33705‑M1/142‑1 (MQ=255) GTTCACCCGCGAATGCGTCAGTGGCTTCAACACCGCATTCGCGGGTAAACCC‑GCTCCTACAGGGTGCATCTGATTGCTTCAGATCACTGGATTAACTGGATACGCAAGTGTATACACTTTCCGCAAAACAATAATGTGCggg > 2:33705‑M1/1‑142 (MQ=255) GTTCACCCGCGAATGCGTCAGTGGCTTCAACACCGCATTCGCGGGTAAACCC‑GCTCCTACAGGGTGCATCTGATTGCTTCAGATCACTGGATTAACTGGATACGCAAGTGTATACACTTTCCGCAAAACAATAATGTGCgg > 6:23774‑M1/1‑141 (MQ=255) GTTCACCCGCGAATGCGTCAGTGGCTTCAACACCGCATTCGCGGGTAAACCC‑GCTCCTACAGGGTGCATCTGATTGCTTCAGATCACTGGATTAACTGGATACGCAAGTGTATACACTTTCCGCAAAACAATAATGTGCgg < 5:23774‑M1/141‑1 (MQ=255) gtttacccgcgaatgcggtgttgaagccactgacgcattcgcgggtaaacccgctcctacAGGGTGCATCTGATTGCTTCAGATCACTGGATTAACTGGATACGCAAGTGTATACACTTTCCGCATAACAATAATGTGCGGGGAGTAgg > 7:198377‑M2/61‑149 (MQ=255) TTCACCCGCGAATGCGTCAGTGGCTTCAACACCGCATTCGCGGGTAAACCC‑GCTCCTACAGGGTGCATCTGATTGCTTCAGATCACTGGATTAACTGGATACGCAAGTGTATACACTTTCCGCAAAACAATAATGTGCGGGGAGTAggg > 2:116075‑M1/1‑149 (MQ=255) aCCCGCGAATGCGTCAGTGGCTTCAACACCGCATTCGCGGGTAAACCC‑GCTCCTACAGGGTGCATCTGATTGCTTCAGATCACTGGATTAACTGGATACGCAAGTGTATACACTTTCCGCAAAACaataa < 6:217209/130‑1 (MQ=255) aCCCGCGAATGCGTCAGTGGCTTCAACACCGCATTCGCGGGTAAACCC‑GCTCCTACAGGGTGCATCTGATTGCTTCAGATCACTGGATTAACTGGATACGCAAGTGTATACACTTTCCGCAAAACaataa > 5:217209/1‑130 (MQ=255) ccGCGAATGCGTCAGTGGCTTCAACACCGCATTCGCGGGTAAACCC‑GCTCCTACAGGGTGCATCTGATTGCTTCAGATCACTGGATTAACTGGATACGCAAGTGTATACACTTTCCGCAAAACAAAAATGTGCGGGGAGTAGGGGCATg < 4:49129/149‑1 (MQ=255) ccgcgaatgcggtgttgaagccactgacgcattcgcgggtgaacccgctcctacAGGGTGCATCTGATTGCTTCAGATCa > 2:156949‑M2/55‑80 (MQ=255) ccgcgaatgcggtgttgaagccactgacgcattcgcgggtgaacccgctcctacAGGGTGCATCTGATTGCTTCAGATCa < 1:156949‑M2/26‑1 (MQ=255) cGTCAGTGGCTTCAACACCGCATTCGCGGGTAAACCC‑GCTCCTACAGGGTGCATCTGATTGCTTCAGATCACTGGATTAACTGGATACGCAAGTGTATACACTTTCCGCAAAACAATAATGTGCGGGGAGTAGCGGCATGCGTATCTg < 7:227265/148‑1 (MQ=255) gTCAGTGGCTTCAACACCGCATTCGCGGGTAAACCC‑GCTCCTACAGGGTGCATCTGATTGCTTCAGATCACTGGATTAACTGGATACGCAAGTGTATACACTTTCCGCAAAACAATAATGTGCGGGGAGTAGGGGCATGCGTATCTGGc < 7:93957/149‑1 (MQ=255) gTGGCTTCAACACCGCATTCGCGGGTAAACCC‑GCTCCTACAGGGTGCATCTGATTGCTTCAGATCACTGGATTAACTGGATACGCAAGTGTATACACTTTCCGCAAAACAATAATGTGCGGGGAGTAGGGGCATGCGTATCTGGCGTaa < 7:30041/149‑1 (MQ=255) tGGCTTCAACACCGCATTCGCGGGTAAACCC‑GCTCCTACAGGGTGCATCTGATTGCTTCAGATCACTGGATTAACTGGATACGCAAGTGTATACACTTTCCGCAAAACAATAATGTGCGGGGAGTAGGGGCATGCGTATCTGGCGt > 4:51423/1‑146 (MQ=255) ggCTTCAACACCGCATTCGC‑GGTAAACCC‑GCTCCTACAGGGTGCATCTGATTGCTTCAGATCACTGGATTAACTGGATACGCAAGTGTATACACTTTCCGCAAAACAATAATGTGCGGGGAGTAGGGGCATGCGTATCTGGCGTAaga < 3:226579/148‑1 (MQ=255) gCTTCAACACCGCATTCGCGGGTAAACCC‑GCTCCTACAGGGTGCATCTGATTGCTTCAGATCACTGGATTAACTGGATACGCAAGTGTATACACTTTCCGCAAAACAATAATGTGCGGGGAGTAGGGGCATGCGTATCTGGCGTAaga < 2:152219/148‑1 (MQ=255) ttCAACACCGCATTCGCGGGTAAACCC‑GCTCCTACAGGGTGCATCTGATTGCTTCAGATCACTGGATTAACTGGATACGCAAGTGTATACACttt < 1:158711/95‑1 (MQ=255) ttCAACACCGCATTCGCGGGTAAACCC‑GCTCCTACAGGGTGCATCTGATTGCTTCAGATCACTGGATTAACTGGATAAGCAAGTGTATACACttt > 2:158711/1‑95 (MQ=255) aaCACCGCATTCGCGGGTAAACCC‑GCTCCTACAGGGTGCATCTGATTGCTTCAGATCACTGGATTAACTGGATACGCAAGTGTATACACTTTCCGCAAAACAATAATGTGCGGGGAGTAGGGGCATGCGTATCTGGCGTAAGAGCATc > 5:145395/1‑148 (MQ=255) ccGCATTCGCGGGTAAACCC‑GCTCCTACAGGGTGCATCTGATTGCTTCAGATCACTGGATTAACTGGATACGCAAGTGTATACACTTTCCGCAAAACAATAATGTGCGGGGAGTAGGGGCATGCGTATCTGGc > 2:99343/1‑133 (MQ=255) ccGCATTCGCGGGTAAACCC‑GCTCCTACAGGGTGCATCTGATTGCTTCAGATCACTGGATTAACTGGATACGCAAGTGTATACACTTTCCGCAAAACAATAATGTGCGGGGAGTAGGGGCATGCGTATCTGGc < 1:99343/133‑1 (MQ=255) ccGCATTCGCGGGTAAACCC‑GCTCCTACAGGGTGCATCTGATTGCTTCAGATCACTGGATTAACTGGATACGCAAGTGTATACACTTTCCGCAAAACAATAATGTGCGGGGAGTAGGGGCATGCGTATCTGGCGTAAGAGCATCCAGtt > 6:193749/1‑149 (MQ=255) ccGCATTCGCGGGTAAACCC‑GCTCCTACAGGGTGCATCTGATTGCTTCAGATCACTGGATTAACTGGATACGCAAGTGTATACACTTTCCGCAAAACAATAATGTGCGGGGAGTAGGGGCATGCGTATCTGGCGTAAGAGCATCCAGtt > 8:78322/1‑149 (MQ=255) ttCGCGGGTAAACCC‑GCTCCTACAGGGTGCATCTGATTGCTTCAGATCACTGGATTAACTGGATACGCAAGTGTATACACTTTCCGCAAAACAATAATGTGCGGGGAGTAGGGGCATGCGTATCTGGCGTAAGAGCATCCAGTTGCAAt < 7:74421/149‑1 (MQ=255) gcgGGTAAACCC‑GCTCCTACAGGGTGCATCTGATTGCTTCAGATCACTGGATTAACTGGATACGCAAGTGTATACACTTTCCGCAAAACAATAATGTGCgg > 6:9043/1‑101 (MQ=255) gcgGGTAAACCC‑GCTCCTACAGGGTGCATCTGATTGCTTCAGATCACTGGATTAACTGGATACGCAAGTGTATACACTTTCCGCAAAACAATAATGTGCgg < 5:9043/101‑1 (MQ=255) gcgGGTAAACCC‑GCTCCTACAGGGTGCATCTGATTGCTTCAGATCACTGGATTAACTGGATACGCAAGTGTATACACTTTCCGCAAAACAATAATGTGCGGGGAGTAGGGGCATGCGTATCTGGCGTAAGAGCGTCCAGTTGCAATTg < 3:51423/148‑1 (MQ=255) gcgGGTAAACCC‑GCTCCTACAGGGTGCATCTGATTGCTTCAGATCACTGGATTAACTGGATACGCAAGTGTATACACTTTCCGCAAAACAATAATGTGCGGGGAGTAGGGGCATGCGTATCTGGCGTAAGAGCATCCAGTTGCAATTGa > 2:99769/1‑149 (MQ=255) ccgctcctacAGGGTGCATCTGATTGCTTCAGATCACTGGATTAACTGGATACGCAAGTGTATACACTTTCCGCAAAACAATAATGTGCGGGGAGTAGGGGCATGCGTATCTGGCGTAAGAGCATCCAGTTGCAATTGATCACCAGCAt > 4:183193‑M2/11‑149 (MQ=255) ctacAGGGTGCATCTGATTGCTTCAGATCACTGGATTAACTGGATACGCAAGTGTATACACTTTCCGCAAAACAATAATGTGCGGGGAGTAGGGGCATGCGTATCTGGCGTAAGAGCATCCAGTTGCAATTGATCACCAGCATGGgcgc > 5:102379‑M2/5‑149 (MQ=255) aGGGTGCATCTGATTGCTTCAGATCACTGGATTAACTGGATACGCAAGTGTATACACTTTCCGCAAAACAATAATGTGCGGGGAGTAGGGGCATGCGTATCTGGCGTAAGAGCATCCAGTTGCAATTGATCACCAGCATGGGCGCTGcc > 6:227690/1‑149 (MQ=255) | AAGCGCAGATCGACGCCACGGTGGATGCCATCGTGCGGACCATCGCTGAGCAATAAGCCCCGTACACCGTCCCCCCGTAGGAGCGGGTTCACCCGCGAATGCGTCAGTGGCTTCAACACCGCATTCGCGGGTAAACCC‑GCTCCTACAGGGTGCATCTGATTGCTTCAGATCACTGGATTAACTGGATACGCAAGTGTATACACTTTCCGCAAAACAATAATGTGCGGGGAGTAGGGGCATGCGTATCTGGCGTAAGAGCATCCAGTTGCAATTGATCACCAGCATGGGCGCTGCC > NC_002947/383285‑383579 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |