New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	383361 =	33 (0.780)	5 (0.130)	5/232	NT	13.6%	intergenic (+21/‑162)	PP_0319/PP_0320	hypothetical protein/methyl‑accepting chemotaxis transducer
	?	NC_002947	383431 =	34 (0.900)					intergenic (+91/‑92)	PP_0319/PP_0320	hypothetical protein/methyl‑accepting chemotaxis transducer

CTGCCCTTAACCTGTGCTCCAAGCAGGTTGAGCTGCAGAAGGAGCATCAGCAGACCCTTGCGCGAACTCAAGCGCAGATCGACGCCACGGTGGATGCCATCGTGCGGACCATCGCTGAGCAATAAGCCCCGTACACCGTCCCCCCGTAGGAGCGGGTTCACCCGCGAATGCGTCAGTGGCTTCAACACCGCATTCGCGGGTAAACCC‑GCTCCTACAGGGTGCATCTGATTGCTTCAGATCACTGGATTAACTGGATACGCAAGTGTATACACTTTCCGCAAAACAATAATGT  >  NC_002947/383216‑383507                                                                                                                                                  |                                                                                                                                                    gcgcccatgctggtgatcaattgcaactggatgctcttacgccagatacgcatgcccctactccccgcacattattgttttgcggaaagtgtatacacttgcgtatccagttaatccagtgatctgaagcaatcagatgcaccctGTAg                                                                                                                                                  >  5:102379‑M1/146‑149 (MQ=255)       atgctggtgatcaattgcaactggatgctcttacgccagatacgcatgcccctactccccgcacattattgttttgcggaaagtgtatacacttgcgtatccagttaatccagtgatctgaagcaatcagatgcaccctGTAGGAGCgg                                                                                                                                            >  4:183193‑M1/140‑149 (MQ=255)         aaCCTGTGCTCCAAGCAGGTTGAGCTGCAGAAGGAGCATCAGCAGACCCTTGCGCGAACTCAAGCGCAGATCGACGCCACGGTGGATGCCATCGTGCGGACCATCGCTGAGCAATAAGCCCCGTACACCGTCCCCCTGTAGGAGCgg                                                                                                                                            <  4:112682/147‑1 (MQ=255)              gtgCTCCAAGCAGGTTGAGCTGCAGAAGGAGCATCAGCAGACCCTTGCGCGAACTCAAGCGCAGATCGACGCCACGGTGGATGCCATCGTGCGGACCATCGCTGAGCAATAAGCCCCGTACACCGTCCCCCCGTAGGAGCGGGTTCAcc                                                                                                                                     >  3:173690/1‑149 (MQ=255)                  tCCAAGCAGGTTGAGCTGCAGAAGGAGCATCAGCAGACCCTTGCGCGAACTCAAGCGCAGATCGACGCCACGGTGGATGCCATCGTGCGGACCATCGCTGAGCAATAAGCCCCGTACACCGTCCCCCCGTAGGAGCGGGTTCACCcgc                                                                                                                                  >  8:182025/1‑148 (MQ=255)                    cAAGCAGGTTGAGCTGCAGAAGGAGCATCAGCAGACCCTTGCGCGAACTCAAGCGCAGATCGACGCCACGGTGGATGCCATCGTGCGGACCATCGCTGAGCAATAAGCCCCGTACACCGTCCCCCCGTAg                                                                                                                                                  >  6:172287/1‑130 (MQ=255)                    cAAGCAGGTTGAGCTGCAGAAGGAGCATCAGCAGACCCTTGCGCGAACTCAAGCGCAGATCGACGCCACGGTGGATGCCATCGTGCGGACCATCGCTGAGCAATAAGCCCCGTACACCGTCCCCCCGTAg                                                                                                                                                  <  5:172287/130‑1 (MQ=255)                    cAAGCAGGTTGAGCTGCAGAAGGAGCATCAGCAGACCCTTGCGCGAACTCAAGCGCAGATCGACGCCACGGTGGATGCCATCGTGCGGACCATCGCTGAGCAATAAGCCCCGTACACCGTCCCCCCGTAGGAGCGGGTTAAACCCCGaa                                                                                                                               >  3:7953/1‑149 (MQ=255)                        gaGGTTGAGCTGCAGAAGGAGCATCAGCAGACCCTTGCGCGAACTCAAGCGCAGATCGACGCCACGGTGGATGCCATAGTGCGGACCATCGCTGAGCAATAAGCCCCGTACACCGTCCCCCCGTAGGAGCGGGTTCACCCGCGAATGc                                                                                                                            <  6:194937/147‑1 (MQ=255)                                         ggAGCATCAGCAGACCCTTGCGCGAACTCAAGCGCAGATCGACGCCACGGTGGATGCCATCGTGCGGACCATCGCTGAGCAATAAGCCCCGTACACCGTCCCCCCGTAGGAGCGGGTTCACCCGCGAATGCGTCAGTGGCTTCAACAcc                                                                                                          >  7:203315/1‑149 (MQ=255)                                         ggAGCATCAGCAGACCCTTGCGCGAACTCAAGCGCAGATCGACGCCACGGTGGATGCCATCGTGCGGACCATCGCTGAGCAATAAGCCCCGTACACCGTCCCCCCGTAGGAGCGGGTTCACCCGCGAATGCGTCAGTGGCTTCAACAcc                                                                                                          <  6:63148/149‑1 (MQ=255)                                                  gcagACCCTTGCGCGAACTCAAGCTCAGATCGACGCCACGGTGGATGCCATCGTGCGGACCATCGCTGAGCAATAAGCCCCGTACACCGTCCCCCCGTAGGAGCGGGTTCACCCGCGAATGCGTCAGTGGCTTCAACACCGCATTcgcg                                                                                                 <  3:220318/149‑1 (MQ=255)                                                  gcagACCCTTGCGCGAACTCAAGCGCAGATCGACGCCACGGTGGATGCCATCGTGCGGACCATCGCTGAGCAATAAGCCCCGTACACCGTCCCCCCGTAGGAGCGGGTTCACCCGCGAATGCGTCAGTGGCTTCAACACCGCATTcgcg                                                                                                 <  3:182573/149‑1 (MQ=255)                                                   cagACCCTTGCGCGAACTCAAGCGCAGATCGACGCCACGGTGGATGCCATCGTGCGGACCATCGCTGAGCAATAAGCCCCGTACACCGTCCCCCCGTAGGAGCGGGTTCACCCGCGAATGCGTCAGTGGCTTCAACACCGCATTCGCgg                                                                                                <  8:203315/149‑1 (MQ=255)                                                   cagACCCTTGCGCGAACTCAAGCGCAGATCGACGCCACGGTGGATGCCATCGTGCGGACCATCGCTGAGCAATAAGCCCCGTACACCGTCCCCCCGTAGGAGCGGGTTCACCCGCGAATGCGTCAGTGGCTTCAACACCGCATTCGCgg                                                                                                <  4:200478/149‑1 (MQ=255)                                                        ccTTGCGCGAACTCAAGCGCAGATCGACGCCACGGTGGATGCCATCGTGCGGACCATCGCTGAGCAATAAGCCCCGTACACCGTCCCCCCGTAGGAGCGGGTTCACCCGCGAATGCGTCAGTGGCTTCAACACCGCATTCGCGGGTaaa                                                                                           >  7:69580/1‑149 (MQ=255)                                                        ccTTGCGCGAACTCAAGCGCAGATCGACGCCACGGTGGATGCCATCGTGCGGACCATCGCTGAGCAATAAGCCCCGTACACCGTCCCCCCGTAGGAGCGGGTTCACCCGCGAATGCGTCAGTGGCTTCAACACCGCATTCGC‑GGTAAAc                                                                                          >  4:226579/1‑149 (MQ=255)                                                         cctactccccgcacattattgttatgcggaaagtgtatacacttgcgtatccagttaatccagtgatctgaagcaatcagatgcaccctGTAGGAGCGGGTTTACCCGCGAATGCGTCAGTGGCTTCAACACCGCATTCGCGGGTAAAc                                                                                          >  7:198377‑M1/90‑149 (MQ=255)                                                         cTTGCGCGAACTCAAGCGCAGATCGACGCCACGGTGGATGCCATCGTGCGGACCATCGCTGAGCAATAAGCCCCGTACACCGTCCCCCCGTAGGAGCGGGTTCACCCGCGAATGCGTCAGTGGCTTCAACACCGCATTCGCGGGTAAAc                                                                                          >  3:84896/1‑149 (MQ=255)                                                          ttGCGCGAACTCAAGCGCAGATCGACGCCACGGTGGATGCCATCGTGCGGACCATCGCTGAGCAATAAGCCCCGTACACCGTCCCCCCGTAGGAGCGGGTTCACCCGCGAATGCGt                                                                                                                          <  2:60870/116‑1 (MQ=255)                                                          ttGCGCGAACTCAAGCGCAGATCGACGCCACGGTGGATGCCATCGTGCGGACCATCGCTGAGCAATAAGCCCCGTACACCGTCCCCCCGTAGGAGCGGGTTCACCCGCGAATGCGt                                                                                                                          >  1:60870/1‑116 (MQ=255)                                                              gcgAACTCAAGCGCAGATCGACGCCACGGTGGATGCCATCGTGCGGACCATCGCTGAGCAATAAGCCCCGTACACCGTCCCCCCGTAGGAGCGGGTTAACCCGCGAATGCGTGAGTGGCTTCAACACCGCATTCGCGGGTAAACCC‑GCt                                                                                    >  1:116075/1‑149 (MQ=255)                                                                    tCAAGCGCAGATCGACGCCACGGTGGATGCCATCGTGCGGACCATCGCTGAGCAATAAGCCCCGTACACCGTCCCCCCGTAGGAGCGGGTTCACCCGCGAATGCGTCAGTGGCTTCAACACCGCATTCGCGGGTAAACCC‑GCTCCTa                                                                                >  3:85009/1‑147 (MQ=255)                                                                      aaGCGCAGATCGACGCCACGGTGGATGCCATCGTGCGGACCATCGCTGAGCAATAAGCCCCGTACACCGTCCCCCCGTAGGAGCGGGTTCACCCGCGAATGCGTCAGTGGCTTCAACACCGCATTCGCGGGCAAACCC‑GCTCCTACAgg                                                                            >  3:215549/1‑149 (MQ=255)                                                                          gcAGATCGACGCCACGGTGGATGCCATCGTGCGGACCATCGCTGAGCAATAAGCCCCGTACACCGTCCCCCCGTAGGAGCGGGTTCACCCGCGAATGCGTCAGTGGCTTCAACACCGCATTCGCGGGTAAACCC‑GCTCCTACAGGGTg                                                                         >  3:26931/1‑148 (MQ=255)                                                                          gcAGATCGACGCCACGGTGGATGCCATCGTGCGGACCATCGCTGAGCAATAAGCCCCGTACACCGTCCCCCCGTAGGAGCGGGTTCACCCGCGAATGCGTCAGTGGCTTCAACACCGCATTCGCGGGTAAACCC‑GCTCCTACAGGGTg                                                                         >  2:73791/1‑148 (MQ=255)                                                                            aGATCGACGCCACGGTGGATGCCATCGTGCGGACCATCGCTGAGCAATAAGCCCCGTACACCGTCCCCCCGTAGGAGCGGGTTCACCCGCGAATGCGTCAGTGGCTTCAACACCGCATTcgccg                                                                                                >  4:264358/1‑122 (MQ=255)                                                                               tttgcggaaagtgtatacacttgcgtatccagttaatccagtgatctgaagcaatcagatgcaccctGTAGGAGCGGGTTCACCCGCGAATGCGTCAGTGGCTTCAACACCGCATTCGCGGGTAAAcc                                                                                         >  6:3443‑M1/68‑128 (MQ=255)                                                                               tttgcggaaagtgtatacacttgcgtatccagttaatccagtgatctgaagcaatcagatgcaccctGTAGGAGCGGGTTCACCCGCGAATGCGTCAGTGGCTTCAACACCGCATTCGCGGGTAAAcc                                                                                         <  5:3443‑M1/61‑1 (MQ=255)                                                                                  aCGCCACGGTGGATGCCATCGTGCGGACCATCGCTGAGCAATAAGCCCCGTACACCGTCCCCCCGTAGGAGCGGGTTCACCCGCGAATGCGTCAGTGGCTTCAACACCGCATTCGCGGGCAAACCC‑GCTCCTACAGGGTGCATCTGAtt                                                                <  4:215549/149‑1 (MQ=255)                                                                                        cGGTGGATGCCATCGTGCGGACCATCGCTGAGCAATAAGCCCCGTACACCGTCCCCCCGTAGGAGCGGGTTCACCCGCGAATGCGTCAGTGGCTTCAACACCGCATTCGCGGGTAAACCC‑GCTCCTACAGGGTGCATCTGATTGCTTCa                                                          <  1:101673/149‑1 (MQ=255)                                                                                         ggTGGATGCCATCGTGCGGACCATCGCTGAGCAATAAGCCCCGTACACCGTCCCCCCGTAGGAGCGGGTTCAACCGCGAATGCGTCAGTGGCTTCAACCCCGCATTCGCGGGTAAACCC‑GCTCCTACAGGGTGCATCTGATTGCtt                                                            >  6:243659/1‑146 (MQ=255)                                                                                               tGCCATCGTGCGGACCATCGCTGAGCAATAAGCCCCGTACACCGTCCCCCCGTAGGAGCGGGTTCACCCGCGAATGCGTCAGTGGCTTCAACACCGCATTCGCGGGTAAACCC‑GCTCCTACAGGGTGCATCTGATTGCTTCAGATCACt                                                   <  4:173690/149‑1 (MQ=255)                                                                                                    tCGTGCGGACCATCGCTGAGCAATAAGCCCCGTACACCGTCCCCCCGTAGGAGCGGGTTCACCCGCGAATGCGTCAGTGGCTTCAACACCGCATTCGCGGGTAAACCC‑GCTCCTa                                                                                >  5:53275/1‑115 (MQ=255)                                                                                                    tCGTGCGGACCATCGCTGAGCAATAAGCCCCGTACACCGTCCCCCCGTAGGAGCGGGTTCACCCGCGAATGCGTCAGTGGCTTCAACACCGCATTCGCGGGTAAACCC‑GCTCCTa                                                                                <  6:53275/115‑1 (MQ=255)                                                                                                                tCGCTGAGCAATAAGCCCCTTACACCGTCCCCCCGTAGGAGCGGGTTCACACTCGAATGAGTCAGTGGCTTCAACACCGCATTCGCGTGTAAACCC‑GCTCATACATGGTGCATCTGATTTCTTCAGATCACTGGATTAACTGGATACGc                                  <  6:43027/149‑1 (MQ=255)                                                                                                                   cTGAGCAATAAGCCCCGTACACCGTCCCCCCGTAGGAGCGGGTTCACCCGCGAATGCGTCAGTGGCTTCAACACCGCATTCGCGGGTAAACCCAGCTCCTACAGGGTGCATCTGATTGCTTCAGATCACTGGATTAACTGGATACGCaa                                <  1:73791/149‑1 (MQ=255)                                                                                                                      aGCAATAAGCCCCGTACACCGTCCCCCCGTAGGAGCGGGTTCACCCGCGAATGCGTCAGTGGCTTCAACACCGCATTCGCGGGTAAACCC‑GCTCCTACAGGGTGCATCTGATTGCTTCAGATCACTGGATTAACTGGATACGCAAgt                              <  4:7953/147‑1 (MQ=255)                                                                                                                        tgatctgaagcaatcagatgcaccctGTAGGAGCGGGTTCACCCGCGAATGCGTCAGTGGCTTCAACACCGCATTCGCgg                                                                                                >  2:156949‑M1/27‑80 (MQ=255)                                                                                                                        tgatctgaagcaatcagatgcaccctGTAGGAGCGGGTTCACCCGCGAATGCGTCAGTGGCTTCAACACCGCATTCGCgg                                                                                                <  1:156949‑M1/54‑1 (MQ=255)                                                                                                                         aaTAAGCCCCGTACACCGTCCCCCCGTAGGAGCGGGTTCACCCGCGAATGCGTCAGTGGCTTCAACACCGCATTCGCGGGTAAACCC‑GCTCCTACAGGGTGCATCTGATTGCTTCAGATCACTGGATTAACTGGATACGCAAGTGtata                         <  8:69580/149‑1 (MQ=255)                                                                                                                                           tCCCCCCGTAGGAGCGGGTTCACCCGCGAATGCGTCAGTGGCTTCAACACCGCATTCGCGGGTAAACCC‑GCTCCTACAGGGTGCATCTGAtt                                                                <  3:257821/92‑1 (MQ=255)                                                                                                                                                ccGTAGGAGCGGGTTCACCCGCGAATGCGTCAGTGGCTTCAACACCGCATTCGCGGGTAAACCC‑GCTCCTACAGGGTGAATCTGATTGCTTCAGATCACTGGATTAACTGGATACGCAAGTGTATACACTTTCCGCAAAACAATAAtgt  >  8:74421/1‑149 (MQ=255)                                                                                                                                                ccGTAGGAGCGGGTTCACCCGCGAATGCCTCAGTGGCTTCAACACCGCATTCGCGGGTAAACCC‑GCTCCTACAGGGTGCATCTGATTGCTTCAGATCACTGGATTAACTGGATACGCAAGTGTATACACTTTCCGCAAAACAATAAtgt  >  1:152219/1‑149 (MQ=255)                                                                                                                                                  |                                                                                                                                                    CTGCCCTTAACCTGTGCTCCAAGCAGGTTGAGCTGCAGAAGGAGCATCAGCAGACCCTTGCGCGAACTCAAGCGCAGATCGACGCCACGGTGGATGCCATCGTGCGGACCATCGCTGAGCAATAAGCCCCGTACACCGTCCCCCCGTAGGAGCGGGTTCACCCGCGAATGCGTCAGTGGCTTCAACACCGCATTCGCGGGTAAACCC‑GCTCCTACAGGGTGCATCTGATTGCTTCAGATCACTGGATTAACTGGATACGCAAGTGTATACACTTTCCGCAAAACAATAATGT  >  NC_002947/383216‑383507

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.