New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	402553 =	57 (1.350)	4 (0.100)	3/244	NT	8.0%	coding (645/669 nt)	msrA	peptide methionine sulfoxide reductase MsrA
	?	NC_002947	402652 =	38 (0.950)					coding (546/669 nt)	msrA	peptide methionine sulfoxide reductase MsrA

TTCCAGGCCGAGCTGAGCAAGGCCGGCTTCGGTGAGATCACCACCGAAATCGACCAGGCACCGACCGTCTATTTCGCCGAGGCCTACCACCAGCAGTACCTGGCCAAGAACCCGGACGGCTACTGCGGCATCGGCGGCACCGGCGTGTGCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/402705‑402553 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgcctgGTCGATTTCGGTGGTGATCTCACCGAAGCCGGCCTTGCTCAGCTCGGCCTGGAAGGCGTCGCGGCTGGCCTTGGCCTGTTCCAGCTGT  >  NC_002947/402652‑402739                                                                                                                                                                                                                                                   TTCCAGGCCGAGCTGAGCAAGGCCGGCTTCGGTGAGATCACCACCGAAATCGACCAGGCACCGACCGTCTATTTCGCCGAGGCCTACCACCAGCAGTACCTGGCCAAGAACCCGGACGGCTACTGCGGCATCGGCGGCACCGGCGTGTG                                                                                              >  4:225285/1‑149    CAGGCCGAGCTGAGCAAGGCCGGCTTCGGTGAGATCACCACCGAAATCGACCAGGCACCGACCGTCTATTTCGCCGAGGCCTACCACCAGCAGTACCTGGCCAAGAACCCGGACGGCTACTGCGGCATCGGCGGCACCGGCGTGTGCCT                                                                                           <  6:35867/149‑1                                                     aaCAGGAACCGACAGTCTATTTCGCCGAGGCCTACCACCAGCAGTACCTGGCCAACAACCAGGACGGCTTCTGCGTCATCGGCGGCACCGGCGTGTGACTGGTCGATTTCGGTGGAGATCTCACCGAAGCAGGCCATGCTCAGCTCGGC                                          >  5:190110/3‑149                                                            ACCGACCGTCTATTTCGCCGAGGCCTACCACCAGCAGTACCTGGCCAAGAACCCGGACGGCTACTGCGGCATCGGCGGCACCGGCGTGTGCCTGGTCGATTTCGGTGGTGATCTCACCGAAGCCGGCCTTGCTCAGCTCGGCCTGGAAG                                   >  7:23958/1‑149                                                              CGACCGTCTATTTCGCCTAGGCGTACCACCAGCAGTTCCTGGGCAAGATCCCGGACGGCTACTGCGGCATCGGCGGGACCTGCGTGTGCCTGGTGGATTTCGGTGGTGATCTCACCGAAGCCGGCCTTGCTCAGCTCGGCCTGGAAGGC                                 <  6:190110/149‑1                                                                                             GCAGTACCTGGCCAAGAACCCGGACGGCTACTGCGGCATCGGCGGCACCGGCGTGTGCCTGGTCGATTTCGGTGGTGATCTCACCGAAGCCGGCCTTGCTCAGCTCGGCCTGGAAGGCGTCGCGGCTGGCCTTGGCCTGTTCCAGCTGT  <  8:23958/149‑1                                                                                                                                                                                                                                                   TTCCAGGCCGAGCTGAGCAAGGCCGGCTTCGGTGAGATCACCACCGAAATCGACCAGGCACCGACCGTCTATTTCGCCGAGGCCTACCACCAGCAGTACCTGGCCAAGAACCCGGACGGCTACTGCGGCATCGGCGGCACCGGCGTGTGCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/402705‑402553 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgcctgGTCGATTTCGGTGGTGATCTCACCGAAGCCGGCCTTGCTCAGCTCGGCCTGGAAGGCGTCGCGGCTGGCCTTGGCCTGTTCCAGCTGT  >  NC_002947/402652‑402739

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.