New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	402553 =	57 (1.350)	4 (0.100)	3/244	NT	8.0%	coding (645/669 nt)	msrA	peptide methionine sulfoxide reductase MsrA
	?	NC_002947	402652 =	38 (0.950)					coding (546/669 nt)	msrA	peptide methionine sulfoxide reductase MsrA

AACAGGGTCATCGTGCTCATGCTTCAGTTACCTTGCAGGCTGGGTGGCAGGCACACGCCGGTGCCGCCGATGCCGCAGTAGCCGTCCGGGTTCTTGGCCAGGTACTGCTGGTGGTAGGCCTCGGCGAAATAGACGGTCGGTGCCTGGTCGATTTCGGTGGTGATCTCACCGAAGCCGGCCTTGCTCAGCTCGGCCTGGAAGGCGTCGCGGCTGGCCTTGGCCTGTTCCAGCTGTTCCGGGCTGGTGCAGTAGATGGCCGAGCGGTACTGGGTGCCGATGTCGTTGCCCTGGCGCA  >  NC_002947/402506‑402800                                                                                                                                                   |                                                                                                                                                     aaCAGGGTCATCGTGCTCATGCTTCAGTTACCTTGCAGGCTGGGTGGCAGGCACACGCCGGTGCCGCCGATGCCGCAGTAGCCGTCCGGGTTCTTGGCCAGGTACTGCTGGTGGTAGGCCTCGGCGAAATAGACGGTCGGTGCCTGGTc                                                                                                                                                    <  5:7843/149‑1 (MQ=255) aaCAGGGTCATCGTGCTCATGCTTCAGTTACCTTGCAGGCTGGGTGGCAGGCACACGCCGGTGCCGCCGATGCCGCAGTAGCCGTCCGGGTTCTTGGCCAGGTACTGCTGGTGGTAGGCCTCGGCGAAATAGACGGTCGGTGCCTGGTc                                                                                                                                                    <  3:124762/149‑1 (MQ=255)       gTCATCGTGCTCATGCTTCAGTTACCTTGCAGGCTGGGTGGCAGGCACACGCCGGTGCCGCCGATGCCGCAGTAGCCGTCCGGGTTCTTGGCCAGGTACTGCTGGTGGTAGGCCTCGGCGAAATAGACGGTCGGTGCCTGGTCGATTTc                                                                                                                                              >  6:128631/1‑149 (MQ=255)           tCGTGCTCATGCTTCAGTTACCTTGCAGGCTGGGTGGCAGGCACACGCCGGTGCCGCCGATGCCGCAGTAGCCGTCCGGGTTCTTGGCCAGGTACTGCTGGTGGTAGGCCTCGGCGAAATAGACGGTCGGTGCCTGGTCGATTTCggtg                                                                                                                                          <  8:63635/149‑1 (MQ=255)           tCGTGCTCATGCTTCAGTTACCTTGCAGGCTGGGTGGCAGGCACACGCCGGTGCCGCCGATGCCGCAGTAGCCGTCCGGGTTCTTGGCCAGGTACTGCTGGTGGTAGGCCTCGGCGAAATAGACGGTCGGTGCCTGGTCGATTTCggtg                                                                                                                                          <  8:246951/149‑1 (MQ=255)                 tCATGCTTCAGTTACCTTGCAGGCTGGGTGGCAGGCACACGCCGGTGCCGCCGATGCCGCAGTAGCCGTCCGGGTTCTTGGCCAGGTACTGCTGGTGGTAGGCCTCGGCGAAATAGACGGTCGGTGCCTGGTCGATTTCGGTGGTGAtc                                                                                                                                    >  4:77728/1‑149 (MQ=255)                      cTTCAGTTACCTTGCAGGCTGGGTGGCAGGCACACGCCGGTGCCGCCGATGCCGCAGTAGCCGTCCGGGTTCTTGGCCAGGTACTGCTGGTGGTAGGCCTCGGCGAAATAGACGGTCGGTGCCTGGTCGATTTCGGTGGTGATCTCAcc                                                                                                                               <  4:59829/149‑1 (MQ=255)                      cTTCAGTTACCTTGCAGGCTGGGTGGCAGGCACACGCCGGTGCCGCCGATGCCGCAGTAGCCGTCCGGGTTCTTGGCCAGGTACTGCTGGTGGTAGGCCTCGGCGAAATAGACGGTCGGTGCCTGGTCGATTTCGGTGGTGATCTCAcc                                                                                                                               <  2:67000/149‑1 (MQ=255)                            ttACCTTGCAGGCTGGGTGGCAGGCACACGCCGGTGCCGCCGATGCCGCAGTAGCCGTCCGGGTTCTTGGCCAGGTACTGCTGGTGTTAGGCCTCGGCGAAATAGACGGTCGGTGCATGGTCGATTTCggag                                                                                                                                          >  4:25266/1‑130 (MQ=255)                            ttACATTGCATGGTGGGTGGCAGGCACACGCCGGTGCCGCCGTTGCCGCTGTAGCCGTCCGGGTTCTTGGCCAGGTACTTCTGGTGGTAGGCCTCGGCGAAATTGACGGTCGGTGCCTGGTCGATTTCggtg                                                                                                                                          <  3:25266/132‑1 (MQ=255)                             tACCTTGCAGGCTGGGTGGCAGGCACACGCCGGTGCCGCCGATGCCGCAGTAGCCGTCCGGGTTCTTGGCCAGGTACTGCTGGTGGTAGGCCTCGGCGAAATAGACGGTCGGTGCCTGGTCGATTTCGGTGGTGATCTCACCGAAGCCg                                                                                                                        >  7:86695/1‑149 (MQ=255)                                        cTGGGTGGCAGGCACACGCCGGTGCCGCCGATGCCGCAGTAGCCGTCCGGGTTCTTGGCCAGGTACTGCTGGTGGTAGGCCTCGGCGAAATAGACGGTCGGTGCCTGGTCGATTTCGGTGGTGATCTCACCGAAGCCGGCCTTGCTCAg                                                                                                             <  6:176506/149‑1 (MQ=255)                                              ggcaggcaCACGCCGGTGCCGCCGATGCCGCAGTAGCCGTCCGGGTTCTTGGCCAGGTACTGCTGGTGGTAGGCCTCGGCGAAATAGACGGTCGGTGCCTGGTCGATTTCGGTGGTGATCTCACCGAAGCCGGCCTTGCTCAGCTCGGc                                                                                                       <  1:271233/149‑1 (MQ=255)                                              aacaggaaccgacagtctatttcgccgaggcctaccaccagcagtacctggccaacaaccaggacggcttctgcgtcatcggcggcaccggcgtgtgactgGTCGATTTCGGTGGAGATCTCACCGAAGCAGGCCATGCTCAGCTCGGc                                                                                                       >  5:190110‑M2/102‑149 (MQ=255)                                                 AGGCACACGCCGGTGCCGCCGATGCCGCAGTAGCCGTCCGGGTTCTTGGCCAGGTACTGCTGGTGGTAGGCCTCGGCGAAATAGACGGTCGGTGCCTGGTCGATTTCGGTGGTGATCTCACCGAAGCCGGCCTTGCTCAGCTCGGCCTg                                                                                                    <  6:35867‑M1/149‑1 (MQ=255)                                                    CACACGCCGGTGCCGCCGATGCCGCAGTAGCCGTCCGGGTTCTTGGCCAGGTACTGCTGGTGGTAGGCCTCGGCGAAATAGACGGTCGGTGCCTGGTCGATTTCGGTGGTGATCTCACCGAAGCCGGCCTTGCTCAGCTCGGCCTGGaa                                                                                                 >  4:225285‑M1/1‑149 (MQ=255)                                                     accgaccgtctatttcgccgaggcctaccaccagcagtacctggccaagaacccggacggctactgcggcatcggcggcaccggcgtgtgcctgGTCGATTTCGGTGGTGATCTCACCGAAGCCGGCCTTGCTCAGCTCGGCCTGGAAg                                                                                                >  7:23958‑M2/95‑149 (MQ=255)                                                       cgaccgtctatttcgcctaggcgtaccaccagcagttcctgggcaagatcccggacggctactgcggcatcggcgggacctgcgtgtgcctgGTGGATTTCGGTGGTGATCTCACCGAAGCCGGCCTTGCTCAGCTCGGCCTGGAAGGc                                                                                              <  6:190110‑M2/57‑1 (MQ=255)                                                           cGGTGCCGCCGATGCCGCAGTAGCCGTCCGGGTTCTTGGCCAGGTACTGCTGGTGGTAGGCCTCGGCGAAATAGACGGTCGGTGCCTGGTCGATTTCGGTGGTGATCTCACCGAAGCCGGCCTTGCTCAGCTCGGCCt                                                                                                     <  2:170477/138‑1 (MQ=255)                                                           cGGTGCCGCCGATGCCGCAGTAGCCGTCCGGGTTCTTGGCCAGGTACTGCTGGTGGTAGGCCTCGGCGAAATAGACGGTCGGTGCCTGGTCGATTTCGGTGGTGATCTCACCGAAGCCGGCCTTGCTCAGCTCGGCCt                                                                                                     >  1:170477/1‑138 (MQ=255)                                                            ggTGCCGCCGATGCCGCAGTTGCCGTCCGGGTTCTTGGCGAGGTACTGCTGGTGGTAGGCCTCGGCGAAATAGACGGTCGGTGCCTGGTCGATTTCGGTGGTGATCTCACCGAAGCCGGCCTTGCTCAGCTCGGCCTGGAAGGCGTcgc                                                                                         <  5:46534/149‑1 (MQ=255)                                                                  gccgATGCCGCAGTAGCCGTCCGGGTTCTTGGCCAGGTACTGCTGGTGGTAGGCCTCGGCGAAATAGACGGTCGGTGCCTGGTCGATTTCGGTGGTGATCTCACCGAAGCCGGCCTTGCTCAGCTCGGCCTGGAAGGCGTCGCGGCtgg                                                                                   >  1:20198/1‑149 (MQ=255)                                                                   ccgATGCCGCAGTAGCCGTCCGGGTTCTTGGCCAGGTACTGCTGGTGGTAGGCCTCGGCGAAATAGACGGTCGGTGCCTGGTCGATTTCGGTGGTGATCTCACCGAAGCCGGCCTTGCTCAGCTCGGCCTGGAAGGCGTCGCGGCtggc                                                                                  >  3:94964/1‑149 (MQ=255)                                                                           gCAGTAGCCGTCCGGGTTCTTGGCCAGGTACTGCTGGTGGTAGGCCTCGGCGAAATAGACGGTCGGTGCCTGGTCGATTTCGGTGGTGATCTCACCGAAGCCGGCCTTGCTCAGCTCGGCCTGGAAGGCGTCGCGGCtggccttggcct                                                                          <  4:242787/149‑1 (MQ=255)                                                                               tAGCCGTCCGGGTTCTTGGCCAGGTACTGCTGGTGGTAGGCCTCGGCGAAATAGACGGTCGGTGCCTGGTCGATTTCGGTGGTGATCTCACCGAAGCCGGCCTTGCTCAGCTCGGCCTGGAAGGCGTCGCGGCtggc                                                                                  >  1:197825/1‑137 (MQ=255)                                                                               tAGCCGTCCGGGTTCTTGGCCAGGTACTGCTGGTGGTAGGCCTCGGCGAAATAGACGGTCGGTGCCTGGTCGATTTCGGTGGTGATCTCACCGAAGCCGGCCTTGCTCAGCTCGGCCTGGAAGGCGTCGCGGCtggc                                                                                  <  2:197825/137‑1 (MQ=255)                                                                                    gTCCGGGTTCTTGGCCAGGTACTGCTGGTGGTAGGCCTCGGCGAAATAGACGGTCGGTGCCTGGTCGATTTCGGTGGTGATCTCACCGAAGCCGGc                                                                                                                      >  5:40340/1‑96 (MQ=255)                                                                                    gTCCGGGTTCTTGGCCAGGTACTGCTGGTGGTAGGCCTCGGCGAAATAGACGGTCGGTGCCTGGTCGATTTCGGTGGTGATCTCACCGAAGCCGGc                                                                                                                      <  6:40340/96‑1 (MQ=255)                                                                                      gcagtacctggccaagaacccggacggctactgcggcatcggcggcaccggcgtgtgcctgGTCGATTTCGGTGGTGATCTCACCGAAGCCGGCCTTGCTCAGCTCGGCCTGGAAGGCGTCGCGGCTGGCCTTGGCCTGTTCCAGCTGt                                                               <  8:23958‑M2/88‑1 (MQ=255)                                                                                         ggTTCTTGGCCAGGTACTGCTGGTGGTAGGCCTCGGCGAAATAGACGGTCGGTGCCTGGTCGATTTCGGTGGTGATCTCACCGAAGCCGGCCTTGCTCAGCTCGGCCTGGAAGGCGTCGCGGCTGGCCTTGGCCTGTTCCAGCTGTTcc                                                            <  3:97773/149‑1 (MQ=255)                                                                                             cTTGGCCAGGTACTGCTGGTGGTAGGCCTCGGCGAAATAGACGGTCGGTGCCTGGTCGATTTCGGTGGTGATCTCACCGAAGCCGGCCTTGCTCAGCTCGGCCTGGAAGGCGTCGCGGCtggccttgg                                                                             >  4:238476/1‑128 (MQ=255)                                                                                                ggCCAGGTACTGCTGGTGGTAGGCCTCGGCGAAATAGACGGTCGGTGCCTGGTCGATTTCGGTGGTGATCTCACCGAAGCCGGCCTTGCTCAGCTCGGCCTGGAAGGCGTCGCGGCTGGCCTTGGCCTGTTCCAGCTGTTCCGGGCTgg                                                     >  7:159697/1‑149 (MQ=255)                                                                                                  ccAGGTACTGCTGGTGGTAGGCCTCGGCGAAATAGACGGTCGGTGCCTGGTCGATTTCGGTGGTGATCTCACCGAAGCCGGCCTTGCTCAGCTCGGCCTGGAAGGCGTCGCGGCTGGCCTTGGCCTGTTCCAGCTGTTCCGGGCTGGTg                                                   <  5:35867/149‑1 (MQ=255)                                                                                                  ccAGGTACTGCTGGTGGTAGGCCTCGGCGAAATAGACGGTCGGTGCCTGGTCGATTTCGGTGGTGATCTCACCGAAGCCGGCCTTGCTCAGCTCGGCCTGGAAGGCGTCGCGGCTGGCCTTGGCCTGTTCCAGCTGTTCCGGGCTGGTg                                                   <  8:86695/149‑1 (MQ=255)                                                                                                         ctgctgGTGGTAGGCCTCGGCGAAATAGACGGTCGGTGCCTGGTCGATTTCGGTGGTGATCTCACCGAAGCCGGCCTTGCTCAGCTCGGCCTGGAAGGCGTCGCGGCTGGCCTTGGCCTGTTCCAGCTGTTCCGGGCTGGTGCAGTAGa                                            <  4:94964/149‑1 (MQ=255)                                                                                                                  gtAGGCCTCGGCGAAATAGACGGTCGGTGCCTGGTCGATTTCGGTGGTGATCTCACCGAAGCCGGCCTTGCTCAGCTCGGCCTGGAAGGCGTCGCGGCTGGCCTTGGCCTGTTCCAGCTGTTCCGGGCTGGTGCAGTAGATGGCCGAGc                                   >  2:4294/1‑149 (MQ=255)                                                                                                                    aGGCCTCGGCGAAATAGACGGTCGGTGCCTGGTCGATTTCGGTGGTGATCTCACCGAAGCCGGCCTTGCTCAGCTCGGCCTGGAAGGCGTCGCGGCTGGCCTTGGCCTGTTCCAGCTGTTCCGGGCTGGTGCAGTAGATGGCCGa                                     >  7:188991/1‑145 (MQ=255)                                                                                                                    aGGCCTCGGCGAAATAGACGGTCGGTGCCTGGTCGATTTCGGTGGTGATCTCACCGAAGCCGGCCTTGCTCAGCTCGGCCTGGAAGGCGTCGCGGCTGGCCTTGGCCTGTTCCAGCTGTTCCGGGCTGGTGCAGTAGATGGCCGa                                     <  8:188991/145‑1 (MQ=255)                                                                                                                       ccTCGGCGAAATAGACGGTCGGTGCCTGGTCGATTTCGGTGGTGATCTCACCGAAGCCGGCCTTGCTCAGCTCGGCCTGGAAGGCGTCGCGGCTGGCCTTGGCCTGTTCCAGCTGTTCCGGGCTGGTGCAGTAGATGGCCGAGCGGTAc                              >  8:8738/1‑149 (MQ=255)                                                                                                                         tCGGCGAAATAGACGGTCGGTGCCTGGTCGATTTCGGTGGTGATCTCACCGAAGCCGGCCTTGCTCAGCTCGGCCTGGAAGGCGTCGCGGCTGGCCTTGGCCTGTTCCAGCTGTTCCGGGCTGGTGCAGTAGATGGCCGAGCGGTACTg                            >  2:104488/1‑149 (MQ=255)                                                                                                                              gAAATAGACGGTCGGTGCCTGGTCGATTTCGGTGGTGATCTCACCGAAGCCGGCCTTGCTCAGCTCGGCCTGGAAGGCGTCGCGGCTGGCCTTGGCCTGTTCCAGCTGTTCCGGGCTGGTGCAGTAGATGGCCGAGCGGTACTGGGTGc                       >  8:236000/1‑149 (MQ=255)                                                                                                                                    gACGGTCGGTGCCTGGTCGATTTCGGTGGTGATCTCACCGAAGCCGGCCTTGCTCAGCTCGGCCTGGAAGGCGTCGCGGCtggccttg                                                                              >  7:26996/1‑88 (MQ=255)                                                                                                                                    gACGGTCGGTGCCTGGTCGATTTCGGTGGTGATCTCACCGAAGCCGGCCTTGCTCAGCTCGGCCTGGAAGGCGTCGCGGCtggccttg                                                                              <  8:26996/88‑1 (MQ=255)                                                                                                                                    gACGGTCGGTGCCTGGTCGATTTCGGTGGTGATCTCACCGAAGCCGGCCTTGCTCAGCTCGGCCTGGAAGGCGTCGCGGCTGGCCTTGGCCTGTTCCAGCTGTTCCGGGCTGGTGCAGTAGATGGCCGAGCGGTACTGGGTGCCGATGt                 <  7:8738/149‑1 (MQ=255)                                                                                                                                     aCGGTCGGTGCCTGGTCGATTTCGGTGGTGATCTCACCGAAGCCGGCCTTGCTCAGCTCGGCCTGGAAGGCGTCGCGGCTGGCCTTGGCCTGTTCCAGCTGTTCCGGGCTGGTGc                                                  <  3:11433/115‑1 (MQ=255)                                                                                                                                     aCGGTCGGTGCCTGGTCGATTTCGGTGGTGATCTCACCGAAGCCGGCCTTGCTCAGCTCGGCCTGGAAGGCGTCGCGGCTGGCCTTGGCCTGTTCCAGCTGTTCCGGGCTGGTGc                                                  >  4:11433/1‑115 (MQ=255)                                                                                                                                       ggtcggtGCCTGGTCGATTTCGGTGGTGATCTCACCGAAGCCGGCCTTGCTCAGCTCGGCCTGGAAGGCGTCGCGGCTGGCCTTGGCCTGTTCCAGCTGTTCCGGGCTGGTGCAGTAGATGGCCGAGCGGTACTGGGTGCCGATGTCGt              >  4:41985/1‑149 (MQ=255)                                                                                                                                        gtcggtGCCTGGTCGATTTCGGTGGTGATCTCACCGAAGCCGGCCTTGCTCAGCTCGGCCTGGAAGGCGTCGCGGCTGGCCTTGGCCTGTTCCAGCTGTTCCGGGCTGGTGCAGTAGATGGCCGAGCGGTACTGGGTGCCGATGTCGtt             <  3:77728/149‑1 (MQ=255)                                                                                                                                           ggtGCCTGGTCGATTTCGGTGGTGATCTCACCGAAGCCGGCCTTGCTCAGCTCGGCCTGGAAGGCGTCGCGTCTGGCCTTGGCCTGTTCCAGCTGTTCCGGGCTGGTGCAGTAGATGGCCGAGCGGTACTGGGTGCCGATGTCGTTGc           <  8:180164/148‑1 (MQ=255)                                                                                                                                                   gTCGATTTCGGTGGTGATCTCACCGAAGCCGGCCTTGCTCAGCTCGGCCTGGAAGGCGTCGCGGCTGGCCTTGGCCTGTTCCAGCTGTTCCGGGCTGGTGCAGTAGATGGCCGAGCGGTACTGGGTGCCGATGTCGTTGCCCTGGCGCa  >  2:62459/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                                     AACAGGGTCATCGTGCTCATGCTTCAGTTACCTTGCAGGCTGGGTGGCAGGCACACGCCGGTGCCGCCGATGCCGCAGTAGCCGTCCGGGTTCTTGGCCAGGTACTGCTGGTGGTAGGCCTCGGCGAAATAGACGGTCGGTGCCTGGTCGATTTCGGTGGTGATCTCACCGAAGCCGGCCTTGCTCAGCTCGGCCTGGAAGGCGTCGCGGCTGGCCTTGGCCTGTTCCAGCTGTTCCGGGCTGGTGCAGTAGATGGCCGAGCGGTACTGGGTGCCGATGTCGTTGCCCTGGCGCA  >  NC_002947/402506‑402800

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.