New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 539908	33 (0.780)	4 (0.100)	4/250	NT	10.5%	coding (2286/4074 nt)	rpoB	DNA‑directed RNA polymerase subunit beta
	?	NC_002947	= 539974	36 (0.880)					coding (2352/4074 nt)	rpoB	DNA‑directed RNA polymerase subunit beta

TCGCCGCGGTGGTGTGATCGACTCGGTCGACGCCAGCCGTATCGTTGTTCGCGTTGCCGACGACGAAGTGGAAACCGGCGAAGCGGGTGTGGATATCTACAACCTGACCAAGTACACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/539791‑539908 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caccACGCTGAACCTTGTCACCCTTGCTCACCAGCGGACGCTGGTTGATGCAGGTGTTCTGGTTCGAACGGGTGTACTTGGTCAGGTTGTAGATATCCACACCCGCTTCGCCGGTTTCCACTTCGTCGTCGGCAACGCGAACAACGATACGG  <  NC_002947/539974‑539827                                                                                                                                                                                                                                                                            TCGCCGCGGTGGTGTGATCGACTCGGTCGACGCCAGCCGTATCGTTGTTCGCGTTGCCGACGACGAAGTGGAAACCGGCGAAGCGGGTGTGGATATCTACAACCTGACCAAGTACACCACGCTGAACCTTGTCACCCTTGCTCACCAGC                                                                                                                       >  6:222349/1‑149               TGATCGACTCGGTCGACGCCAGCCGTATCGTTGTTCGCGTTGCCGACGACGAAGTGGAAACCGGCGAAGCGGGTGTGGATATCTACAACCTGACCAAGTACACCACGCTGAACCTTGTCACCCTTGCTCACCAGCGGACGCTGGTTGAT                                                                                                         <  5:222349/149‑1                   CGACTCGGTCGACGCCAGCCGTGTAGTTGTTCGCGTTGCCGACGACGAAGTGGAAACCGGCGAAGCGGGTGTGGATATATACAACCTGACCAAGTACACCACGCTGAACCTTGTCACCCTTGCTCACCAGCGGACGCTGGTTGATGCAG                                                                                                     >  7:168903/1‑149                                                   gcggtcCCGACGACGAAGTGGAAACCGGCGAAGAGGGTGTGGATATCTACAACCTGACCAAGTACACCACGCTGAACCTTGTCACCCTTGCTCACCAGCGGACGCTGGTTGATGCAGGTGTTCTGGTTCGAACGGGTGTACTTGGTCAG                                                                     <  8:168903/143‑1                                                                                                                      CACGCTGAACCTTGTCACCCTTGCTCACCAGCGGACGCTGGTTGATGCAGGTGTTCTGGTTCGAACGGGTGTACTTGGTCAGGTTGTAGATATCCACACCCGCTTCGCCGGTTTCCACTTCGTCGTCGGCAACGCGAACAACGATACGG  <  4:142740/149‑1                                                                                                                                                                                                                                                                            TCGCCGCGGTGGTGTGATCGACTCGGTCGACGCCAGCCGTATCGTTGTTCGCGTTGCCGACGACGAAGTGGAAACCGGCGAAGCGGGTGTGGATATCTACAACCTGACCAAGTACACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/539791‑539908 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caccACGCTGAACCTTGTCACCCTTGCTCACCAGCGGACGCTGGTTGATGCAGGTGTTCTGGTTCGAACGGGTGTACTTGGTCAGGTTGTAGATATCCACACCCGCTTCGCCGGTTTCCACTTCGTCGTCGGCAACGCGAACAACGATACGG  <  NC_002947/539974‑539827

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.