New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 539908	33 (0.780)	4 (0.100)	4/250	NT	10.5%	coding (2286/4074 nt)	rpoB	DNA‑directed RNA polymerase subunit beta
	?	NC_002947	= 539974	36 (0.880)					coding (2352/4074 nt)	rpoB	DNA‑directed RNA polymerase subunit beta

CCGTATCGTTGTTCGCGTTGCCGACGACGAAGTGGAAACCGGCGAAGCGGGTGTGGATATCTACAACCTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGACATCATGGCCGACGGCCCGTCCACCGACATGGGTGAGCTGGCTCTGGGTCAGAACATGCGCATCGCGTTCATGGCGTGGAACGGCTTCAACTTCGAAGACTCCATCTGCCTGTCCGAGCGTGTTGTTCAGGAAGATCGCTTC  >  NC_002947/539827‑540121                                                                                                                                                    |                                                                                                                                                    ccGTATCGTTGTTCGCGTTGCCGACGACGAAGTGGAAACCGGCGAAGCGGGTGTGGATATCTACAACCTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTg                                                                                                                                                    <  4:142740‑M2/149‑2 (MQ=255)           gttCGCGTTGCCGACGACGAAGTGGAAACCGGCGAAGCGGGTGTGGATATCTACAACCTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGAcatcat                                                                                                                                          >  8:23773/1‑149 (MQ=255)              cgcgTTGCCGACGACGAAGTGGAAACCGGCGAAGCGGGTGTGGATATCTACAACCTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGACATCATGGc                                                                                                                                       >  1:95861/1‑149 (MQ=255)                         cgacgaAGTGGAAACCGGCGAAGCGGGTGTGGATATCTACAACCTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGACATCATGGCCGACGGCCCGt                                                                                                                            <  5:2434/149‑1 (MQ=255)                            cgaAGTGGAAACCGGCGAAGCGGGTGTGGATATCTACAACCTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGACATCATGGCCGACGGCCCGTCCa                                                                                                                         >  1:213585/1‑149 (MQ=255)                               aGTGGAAACCGGCGAAGCGGGTGTGGATATCTACAACCTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGACATCATGGCCGACGGCCCGTCCAcc                                                                                                                       >  5:255925/1‑148 (MQ=255)                                  ggAAACCGGCGAAGCGGGTGTGGATATCTACAACCTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGACATCATGGCCGACGGCCCGTCCACCGACa                                                                                                                   >  5:22310/1‑149 (MQ=255)                                   gAAACCGGCGAAGCGGGTGTGGATATCTACAACCTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGACATCATGGCCGACGGCCCGTCCACCGACAt                                                                                                                  <  3:20640/149‑1 (MQ=255)                                   gAAACCGGCGAAGCGGGTGTGGATATCTACAACCTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGACATCATGGCCGACGGCCCGTCCACCGACAt                                                                                                                  >  3:254882/1‑149 (MQ=255)                                       ccGGCGAAGCGGGTGTGGATATCTACAACCTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGACATCATGGCCGACGGCCCGTCCACCGACATGGGt                                                                                                              <  3:142740/149‑1 (MQ=255)                                                    tgtgGATATCTACAACCTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGACATCATGGCCGACGGCCCGTCCACCGACATGGGTGAGCTGGCTCTgg                                                                                                 <  4:254882/149‑1 (MQ=255)                                                      tgGATATCTACAACCTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGACATCATGGCCGACGGCGCGTCCACCGACATGGGTGAGCTGGCTCTggg                                                                                                <  3:141631/148‑1 (MQ=255)                                                      tgGATATCTACAACCTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGACATCATGGCCGACGGCCCGTCCACCGACATGGGTGAGCTGGCTCTGGGt                                                                                               <  2:95861/149‑1 (MQ=255)                                                      tgGATATCTACAACCTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGACATCATGGCCGACGGCCCGTCCACCGACATGGGTGAGCTGGCTCTGGGt                                                                                               <  1:255734/149‑1 (MQ=255)                                                                    cTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTggtgtacttggtcaggttgtagatatccacaccctcttcgccggtttccacttcgtcgtcgggaccgc                                                                                 <  8:168903‑M2/149‑69 (MQ=255)                                                                                  ccGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGACATCATGGCCGACGGCCCGTCCACCGACATGGGTGAGCTGGCTCTGGGTCAGAACATGCGCATCGCGTTCATGGCGt                                                                   <  7:23773/149‑1 (MQ=255)                                                                                  ccGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGACATCATGGCCGACGGCCCGTCCACCGACATGGGTGAGCTGGCTCTGGGTCAGAACATGCGCATCGCGTTCATGGCGt                                                                   <  7:188598/149‑1 (MQ=255)                                                                                       cGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGACATCATGGCCGACGGCCCGTCCACCGACATGGGTGAGCTg                                                                                                        >  8:102961/1‑107 (MQ=255)                                                                                       cGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGACATCATGGCCGACGGCCCGTCCACCGACATGGGTGAGCTg                                                                                                        <  7:102961/107‑1 (MQ=255)                                                                                          aCCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGACATCATGGCCGACGGCCCGTCCACCGACATGGGTGAGCTGGCTCTGGGTCAGAACATGCGCATCGCGTTCATGGCGTGGAACGGc                                                           >  7:117806/1‑149 (MQ=255)                                                                                                    cTGCATCAACCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTggtgtacttggtcaggttgtatatatccacacccgcttcgccggtttccacttcgtcgtcggcaacgcgaacaactacacggctggcgtcgaccgagtcg                                                 >  7:168903‑M2/1‑49 (MQ=255)                                                                                                       cATCAACCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGACATCATGGCCGACGGCCCGTCCACCGACATGGGTGAGCTGGCTCTGGGTCAGAACATGCGCATCGCGTTCATGGCGTGGAACGGCTTCAACTTCg                                                 >  2:895/1‑146 (MQ=255)                                                                                                        aTCAACCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTggtgtacttggtcaggttgtagatatccacacccgcttcgccggtttccacttcgtcgtcggcaacgcgaacaacgatacggctggcgtcgaccgagtcgatca                                             <  5:222349‑M2/149‑105 (MQ=255)                                                                                                           aaCCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGACATCATGGCCGACGGCCCGTCCACCGACATGGGTGAGCTGGCTCTGGGTCAGAACATGCGCATCGCGTTCATGGCGTGGAACGGCTTCAACTTCGAAGACTc                                          >  6:95354/1‑149 (MQ=255)                                                                                                           aaCCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGACATCATGGCCGACGGCCCGTCCACCGACATGGGTGAGCTGGCTCTGGGTCAGAACATGCGCATCGCGTTCAGGGCGTGGATCGGCTTCCAGTTCGAAGAcgc                                          >  8:178882/1‑147 (MQ=255)                                                                                                            aCCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGACATCATGGCCGACGGCCCGTCCACCGACATGGGTGAGCTGGCTCTGGGTCAGAACATGCGCATCTCGTTCATGGGGTGGAACGGCTTCAACTTCGAAGAGTcc                                         <  4:104200/149‑1 (MQ=255)                                                                                                            aCCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGACATCATGGCCGACGGCCCGTCCACCGACATGGGTGAGCTGGCTCTGGGTCAGAACATGCGCATCGCGTTCATGGCGTGGAACGGCTTCAACTTCGAAGACTc                                          >  1:1327/1‑148 (MQ=255)                                                                                                            aCCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGACATCATGGCCGACGGCCCGTCCACCGACATGGGTGAGCTGGCTCTGGGTCAGAACATGCGCATCGCGTTCATGGCGTGGAACGGCTTCAACTTCGAAGACTc                                          >  1:174260/1‑148 (MQ=255)                                                                                                              cAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGACATCATGGCCGACGGCCCGTCCACCGACATGGGTGAGCTGGCTCTGGGTCAGAACATGCGCATCGCGTTCATGGCGTGGAACGGCTTCAACTTCGAAGACTCCAt                                       >  6:19847/1‑149 (MQ=255)                                                                                                                  gTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGACATCATGGCCGACGGCCCGTCCACCGACATGGGTGAGCTGGCTCTGGGTCAGAACATGCGCATCGCGTTCATGGCGTGGAACGGCTTCAACTTCGAAGACTCCATCTGc                                   <  6:22310/149‑1 (MQ=255)                                                                                                                      gCTGGTGAGCAAGGGTGACAAGGTTCAGCGTggtgtacttggtcaggttgtagatatccacacccgcttcgccggtttccacttcgtcgtcggcaacgcgaacaacgatacggctggcgtcgaccgagtcgatcacaccaccgcggcga                               >  6:222349‑M2/1‑31 (MQ=255)                                                                                                                      gCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGACATCATGGCCGACGGCCCGTCCACCGACATGGGTGAGCTGGCTCTGGGTCAGAACATGCGCATCGCGTTCATGGCGTGGAACGGCTTCAACtt                                                   <  1:209909/129‑1 (MQ=255)                                                                                                                      gCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGACATCATGGCCGACGGCCCGTCCACCGACATGGGTGAGCTGGCTCTGGGTCAGAACATGCGCATCGCGTTCATGGCGTGGAACGGCTTCAACtt                                                   >  2:209909/1‑129 (MQ=255)                                                                                                                          gTGAGCAAGGGTGACAAGGTTCAGCGTGGTGACATCATGGCCGACGGCCCGTCCACCGACATGGGTGAGCTGGCTCTGGGTCAGAACATGCGCATCGCGTTCATGGCGTGGAACGGCTTCAACTTCGAAGACTCCATCTGCCTGTcc                             >  4:35784/1‑147 (MQ=255)                                                                                                                           tGAGCAAGGGTGACAAGGTTCAGCGTGGTGACATCATGGCCGACGGCCCGTCCACCGACATGGGTGAGCTGGCTCTGGGTCAGAACATGCGCATCGCGTTCATGGCGTGGAACGGCTTCAACTTCGAAGACTCCATCTGCCTGTCCGAg                          <  2:213585/149‑1 (MQ=255)                                                                                                                               cAAGGGTGACAAGGTTCAGCGTGGTGACATCATGGCCGACGGCCCGTCCACCGACATGGGTGAGCTGGCTCTGGGTCAGAACATGCGCATCGCGTTCATGGCGTGGAACGGCTTCAACTTCGAAGACTCCATCTGCCTGTCCGAGCgtg                      <  8:117806/149‑1 (MQ=255)                                                                                                                                  gggTGACAAGGTTCAGCGTGGTGACATCATGGCCGACGGCCCGTCCACCGACATGGGTGAGCTGGCTCTGGGTCAGAACATGCGCATCGCGTTCATGGCGTGGAACGGCTTCAACTTCGAAGACTCCATCTGCCTGTCCGAGCGtgttg                   <  5:19847/149‑1 (MQ=255)                                                                                                                                    gTGACAAGGTTCAGCGTGGTGACATCATGGCCGACGGCCCGTCCACCGACATGGGTGAGCTGGCTCTGGGTCAGAACATGCGCATCGCGTTCATGGCGTGGAACGGCTTCAACTTCGAAGACTCCATCTGCCTGTCCGAGCGTgttgtt                 <  3:35784/149‑1 (MQ=255)                                                                                                                                      gACAAGGTTCAGCGTGGTGACATCATGGCCGACGGCCCGTCCACCGACATGGGTGAGCTGGCTCTGGGTCAGAACATGCGCATCGCGTTCATGGCGTGGAACGGCTTCAACTTCGAAGACTCCATCTGcc                                  >  7:109464/1‑130 (MQ=255)                                                                                                                                         aaGGTTCAGCGTGGTGACATCATGGCCGACGGCCCGTCCACCGACATGGGTGAGCTGGCTCTGGGTCAGAACATGCGCATCGCGTTCATGGCGTGGAACGGCTTCAACTTCGAAGACTCCATCTGCCTGTCCGAGCGTGTTGTTCAgg             >  3:237765/1‑148 (MQ=255)                                                                                                                                           ggTTCAGCGTGGTGACATCATGGCCGACGGCCCGTCCACCGACATGGGTGAGCTGGCTCTGGGTCAGAACATGCGCATCGCGTTCATGGCGTGGAACGGCTTCAACTTCGAAGACTCCATCTGCCTGTCCGAGCGTGTTGTTCAgg             >  7:129296/1‑146 (MQ=255)                                                                                                                                                aGCGTGGTGACATCATGGCCGACGGCCCGTCCACCGACATGGGTGAGCTGGCTCTGGGTCAGAACATGCGCATCGCGTTCATGGCGTGGAACGGCTTCAACTTCGAAGACTCCATCTGCCTGTCCGAGCGTGTTGTTCAGGAAGATCGc     <  5:95354/149‑1 (MQ=255)                                                                                                                                                   gtggtgACATCATGGCCGACGGCCCGTCCACCGACATGGGTGAGCTGGCTCTGGGTCAGAACATGCGCATCGCGTTCATGGCGTGGAACGGCTTCAACTTCGAAGACTCCATCTGCCTGTCCGAGCGTGTTGTTCAGGAAGATCGCTTc  <  8:129296/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                    CCGTATCGTTGTTCGCGTTGCCGACGACGAAGTGGAAACCGGCGAAGCGGGTGTGGATATCTACAACCTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGACATCATGGCCGACGGCCCGTCCACCGACATGGGTGAGCTGGCTCTGGGTCAGAACATGCGCATCGCGTTCATGGCGTGGAACGGCTTCAACTTCGAAGACTCCATCTGCCTGTCCGAGCGTGTTGTTCAGGAAGATCGCTTC  >  NC_002947/539827‑540121

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.