New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 539908	33 (0.780)	4 (0.100)	4/250	NT	10.5%	coding (2286/4074 nt)	rpoB	DNA‑directed RNA polymerase subunit beta
	?	NC_002947	= 539974	36 (0.880)					coding (2352/4074 nt)	rpoB	DNA‑directed RNA polymerase subunit beta

CCGTGACTCCGGTGTCTGCGTGGTTGCTCGCCGCGGTGGTGTGATCGACTCGGTCGACGCCAGCCGTATCGTTGTTCGCGTTGCCGACGACGAAGTGGAAACCGGCGAAGCGGGTGTGGATATCTACAACCTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGACATCATGGCCGACGGCCCGTCCACCGACATGGGTGAGCTGGCTCTGGGTCAGAACATGCGCATCGCGTTCATGGCGT  >  NC_002947/539764‑540056                                                                                                                                                 |                                                                                                                                                     ccGTGACTCCGGTGTCTGCGTGGTTGCTCGCCGCGGTGGTGTGATCGACTCGGTCGACGCCAGCCGTATCGTTGTTCGCGTTGCCGACGACGAAGTGGAAACCGGCGAAGCGGGTGTGGATATCTACAACCTGACCAAGTACACCCGt                                                                                                                                                   >  4:141631/1‑148 (MQ=255)       cTCCGGTGTCTGCGTGGTTGCTCGCCGCGGTGGTGTGATCGACTCGGTCGACGCCAGCCGTATCGTTGTTCGCGTTGCCGACGACGAAGTGGAAACCGGCGAAGCGGGTGTGGATATCTACAACCTGACCAAGTACACCCGTTCGAAc                                                                                                                                             <  4:80677/148‑1 (MQ=255)        tCCGGTGTCTGCGTGGTTGCTCGCCGCGGTGGTGTGATCGACTCGGTCGACGCCAGCCGTATCGTTGTTCGCGTTGCCGACGACGAAGTGGAAACCGGCGAAGCGGGTGTGGATATCTACAACCTGACCAAGTACAccc                                                                                                                                                     <  2:160270/139‑1 (MQ=255)        tCCGGTGTCTGCGTGGTTGCTCGCCGCGGTAGTGTGATCGACTCGGTCGACGCCAGCCGTATCGTTGTTCGCGTTGCCGACGACGAAGTGGAAACCGGCGAAGCGGGTGTGGATATCTACAACCTGACCAAGTACAccc                                                                                                                                                     >  1:160270/1‑139 (MQ=255)          cGGTGTCTGCGTGGTTGCTCGCCGCGGTGGTGTGATCGACTCGGTCGACGCCAGCCGTATCGTTGTTCGCGTTGCCGACGACGAAGTGGAAACCGGCGAAGCGGGTGTGGATATCTACAACCTGACCAAGTACACCCGTTCGAACCAg                                                                                                                                          <  5:157052/148‑1 (MQ=255)                       gTTGCTCGCCGCGGTGGTGTGATCGACTCGGTCGACGCCAGCCGTATCGTTGTTCGCGTTGCCGACGACGAAGTGGAAACCGGCGAAGCGGGTGTGGATATCTACAACCTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCaa                                                                                                                            >  8:188598/1‑149 (MQ=255)                           cTCGCCGCGGTGGTGTGATCGACTCGGTCGACGCCAGCCGTATCGTTGTTCGCGTTGCCGACGACGAAGTGGAAACCGGCGAAGCGGGTGTGGATATCTACAACCTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCa                                                                                                                         <  1:112587/148‑1 (MQ=255)                            tCGCCGCGGTGGTGTGATCGACTCGGTCGACGCCAGCCGTATCGTTGTTCGCGTTGCCGACGACGAAGTGGAAACCGGCGAAGCGGGTGTGGATATCTACAACCTGACCAAGTACACCacgctgaaccttgtcacccttgctcaccagc                                                                                                                       >  6:222349‑M1/1‑118 (MQ=255)                            tCGCCGCGGTGGTGTGATCGACTCGGTCGACGCCAGCCGTATCGTTGTTCGCGTTGCCGACGACGAAGTGGAAACCGGCGAAGCGGGTGTGGATATCTACAACCTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGc                                                                                                                       >  7:100363/1‑149 (MQ=255)                            tCGCCGCGGTGGTGTGATCGACTCGGTCGACGCCAGCCGTATCGTTGTTCGCGTTGCCGACGACGAAGTGGAAACCGGCGAAGCGGGTGTGGATATCTACAACCTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGc                                                                                                                       >  2:68273/1‑149 (MQ=255)                             cgccgcGGTGGTTTGATCGACTCGGTCGACGCCAGCCGTATCGTTGTTCGCGTTGCCGACGACGAAGTGGAAACCGGCGAAGCGGGTGTGGATATCTACAACCTGACCAAGTACACCCGt                                                                                                                                                   <  2:57204/120‑1 (MQ=255)                             cgccgcGGTGGTATGATCGACTCGGTCGACGCCAGCCGTATCGTTGTTCGCGTTGCCGACGACGAAGTGGAAACCGGCGAAGCGGGTGTGGATATCTACAACCTGACCAAGTACACCCGt                                                                                                                                                   >  1:57204/1‑120 (MQ=255)                                  cgGTGGTGTGATCGACTCGGTCGACGCCAGCCGTATCGTTGTTCGCGTTGCCGACGACGAAGTGGAAACCGGCGAAGCGGGTGTGGATATCTACAACCTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGc                                                                                                                 >  4:20640/1‑149 (MQ=255)                                   ggtggtGTGATCGACTCGGTCGACGCCAGCCGTATCGTTGTTCGCGTTGCCGACGACGAAGTGGAAACCGGCGAAGCGGGTGTGGATATCTACAACCTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCt                                                                                                                <  1:68273/149‑1 (MQ=255)                                       gtgtGATCGACTCGGTCGACGCCAGCCGTATCGTTGTTCGCGTTGCCGACGACGAAGTGGAAACCGGCGAAGCGGGTGTGGATATCTACAACCTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGCGGACGCTGGt                                                                                                             <  8:100363/148‑1 (MQ=255)                                        tgtgATCGACTCGGTCGACGCCAGCCGTATCGTTGTTCGCGTTGCCGACGACGAAGTGGAAACCGGCGAAGCGGGTGTGGATATCTACAACCTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTg                                                                                                            >  2:255734/1‑148 (MQ=255)                                          tgATCGACTCGGTCGACGCCAGCCGTATCGTTGTTCGCGTTGCCGACGACGAAGTGGAAACCGGCGAAGCGGGTGTGGATATCTACAACCTGACCAAGTACACCacgctgaaccttgtcacccttgctcaccagcggacgctggttgat                                                                                                         <  5:222349‑M1/149‑46 (MQ=255)                                          tgATCGACTCGGTCGACGCCAGCCGTATCGTTGTTCGCGTTGCCGACGACGAAGTGGAAACCGGCGAAGCGGGTGTGGATATCTACAACCTGACCAAGTACACCCGTTCGAACCa                                                                                                                                           >  2:58297/1‑115 (MQ=255)                                          tgATCGACTCGGTCGACGCCAGCCGTATCGTTGTTCGCGTTGCCGACGACGAAGTGGAAACCGGCGAAGCGGGTGTGGATATCTACAACCTGACCAAGTACACCCGTTCGAACCa                                                                                                                                           <  1:58297/115‑1 (MQ=255)                                             tCGACTCGGTCGACGCCAGCCGTATCGTTGTTCGCGTTGCCGACGACGAAGTGGAAACCGGCGAAGCGGGTGTGGATATCTACAACCTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAg                                                                                                      >  6:2434/1‑149 (MQ=255)                                              cGACTCGGTCGACGCCAGCCGTGTAGTTGTTCGCGTTGCCGACGACGAAGTGGAAACCGGCGAAGCGGGTGTGGATATATACAACCTGACCAAGTACACCacgctgaaccttgtcacccttgctcaccagcggacgctggttgatgcag                                                                                                     >  7:168903‑M1/1‑100 (MQ=255)                                               gACTCGGTCGACGCCAGCCGTATCGTTGTTCGCGTTGCCGACGACGAAGTGGAAACCGGCGAAGCGGGTGTGGATATCTACAACCTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAgg                                                                                                     <  5:19702/148‑1 (MQ=255)                                                        gACGCCAGCCGTATCGTTGTTCGCGTTGCCGACGACGAAGTGGAAACCGGCGAAGCGGGTGTGGATATCTACAACCTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAGGGTGACAAgg                                                                                            <  1:51549/148‑1 (MQ=255)                                                            ccAGCCGTATCGTTGTTCGCGTTGCCGACGACGAAGTGGAAACCGGCGAAGCGGGTGTGGATATCTACAACCTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAg                                                                                       >  3:104200/1‑149 (MQ=255)                                                                ccGTATCGTTGTTCGCGTTGCCGACGACGAAGTGGAAACCGGCGAAGCGGGTGTGGATATCTACAACCTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTg                                                                                   <  4:142740‑M2/149‑2 (MQ=255)                                                                   tATCGTTGTTCGCGTTGCCGACGACGAAGTGGATACCGGCGAAGCGGGTGTGGATATCTACAACCTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACGAGCGTGCGCTGGt                                                                                                             <  5:68776/120‑1 (MQ=255)                                                                   tATCGTTGTTCGCGTTGACGACGACGAAGTGGAAACCGGCGAAGCGGGTGTGGATATCTACAACCTGACCAAGTACACCCGTTCGAACCACAACACCTGCATCAACAAGCGTCCTCTGGt                                                                                                             >  6:68776/1‑120 (MQ=255)                                                                          gttCGCGTTGCCGACGACGAAGTGGAAACCGGCGAAGCGGGTGTGGATATCTACAACCTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGAcatcat                                                                         >  8:23773/1‑149 (MQ=255)                                                                             cgcgTTGCCGACGACGAAGTGGAAACCGGCGAAGCGGGTGTGGATATCTACAACCTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGACATCATGGc                                                                      >  1:95861/1‑149 (MQ=255)                                                                              gcggtcccgacgacGAAGTGGAAACCGGCGAAGAGGGTGTGGATATCTACAACCTGACCAAGTACACCacgctgaaccttgtcacccttgctcaccagcggacgctggttgatgcaggtgttctggttcgaacgggtgtacttggtcag                                                                     <  8:168903‑M1/143‑82 (MQ=255)                                                                                        cgacgaAGTGGAAACCGGCGAAGCGGGTGTGGATATCTACAACCTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGACATCATGGCCGACGGCCCGt                                                           <  5:2434/149‑1 (MQ=255)                                                                                           cgaAGTGGAAACCGGCGAAGCGGGTGTGGATATCTACAACCTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGACATCATGGCCGACGGCCCGTCCa                                                        >  1:213585/1‑149 (MQ=255)                                                                                              aGTGGAAACCGGCGAAGCGGGTGTGGATATCTACAACCTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGACATCATGGCCGACGGCCCGTCCAcc                                                      >  5:255925/1‑148 (MQ=255)                                                                                                 ggAAACCGGCGAAGCGGGTGTGGATATCTACAACCTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGACATCATGGCCGACGGCCCGTCCACCGACa                                                  >  5:22310/1‑149 (MQ=255)                                                                                                  gAAACCGGCGAAGCGGGTGTGGATATCTACAACCTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGACATCATGGCCGACGGCCCGTCCACCGACAt                                                 >  3:254882/1‑149 (MQ=255)                                                                                                  gAAACCGGCGAAGCGGGTGTGGATATCTACAACCTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGACATCATGGCCGACGGCCCGTCCACCGACAt                                                 <  3:20640/149‑1 (MQ=255)                                                                                                      ccGGCGAAGCGGGTGTGGATATCTACAACCTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGACATCATGGCCGACGGCCCGTCCACCGACATGGGt                                             <  3:142740/149‑1 (MQ=255)                                                                                                       cGGCGAAGCGGGTGTGGATATCTACAACCTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGCGGACGCTGGttg                                                                                                           >  4:48143/1‑84 (MQ=255)                                                                                                       cGGCGAAGCGGGTGTGGATATCTACAACCTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGCGGACGCTGGttg                                                                                                           <  3:48143/86‑3 (MQ=255)                                                                                                                   tgtgGATATCTACAACCTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGACATCATGGCCGACGGCCCGTCCACCGACATGGGTGAGCTGGCTCTgg                                <  4:254882/149‑1 (MQ=255)                                                                                                                     tgGATATCTACAACCTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGACATCATGGCCGACGGCGCGTCCACCGACATGGGTGAGCTGGCTCTggg                               <  3:141631/148‑1 (MQ=255)                                                                                                                     tgGATATCTACAACCTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGACATCATGGCCGACGGCCCGTCCACCGACATGGGTGAGCTGGCTCTGGGt                              <  2:95861/149‑1 (MQ=255)                                                                                                                     tgGATATCTACAACCTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGACATCATGGCCGACGGCCCGTCCACCGACATGGGTGAGCTGGCTCTGGGt                              <  1:255734/149‑1 (MQ=255)                                                                                                                                   cTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTggtgtacttggtcaggttgtagatatccacaccctcttcgccggtttccacttcgtcgtcgggaccgc                <  8:168903‑M2/149‑69 (MQ=255)                                                                                                                                                 ccGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGACATCATGGCCGACGGCCCGTCCACCGACATGGGTGAGCTGGCTCTGGGTCAGAACATGCGCATCGCGTTCATGGCGt  <  7:188598/149‑1 (MQ=255)                                                                                                                                                 ccGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGACATCATGGCCGACGGCCCGTCCACCGACATGGGTGAGCTGGCTCTGGGTCAGAACATGCGCATCGCGTTCATGGCGt  <  7:23773/149‑1 (MQ=255)                                                                                                                                                 cacgctgaaccttgtcacccttgctcaccagcggacgctggttgatgcaggtgttctggttcgaacgggtgtacttggtcaggttgtagatatccacacccgcttcgccggtttccacttcgtcgtcggcaacgcgaacaacgatacgg  <  4:142740‑M1/149‑149 (MQ=255)                                                                                                                                                 |                                                                                                                                                     CCGTGACTCCGGTGTCTGCGTGGTTGCTCGCCGCGGTGGTGTGATCGACTCGGTCGACGCCAGCCGTATCGTTGTTCGCGTTGCCGACGACGAAGTGGAAACCGGCGAAGCGGGTGTGGATATCTACAACCTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGACATCATGGCCGACGGCCCGTCCACCGACATGGGTGAGCTGGCTCTGGGTCAGAACATGCGCATCGCGTTCATGGCGT  >  NC_002947/539764‑540056

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.