New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 604803	47 (1.110)	3 (0.070)	3/246	NT	6.6%	coding (116/969 nt)	thiL	thiamin monophosphate kinase
	?	NC_002947	= 604838	40 (0.990)					coding (151/969 nt)	thiL	thiamin monophosphate kinase

GGCGAACAAGCGCTGATCCTGGCGCTGCCTGGCCATGGGTGAGTTCGAGCTGATCAACCATTACTTCGCCGCAGCGCCCTGTGCGCAGGGCGGCGAGGGCGTGGCGCTGGGTATCGGCGACGACTGCGCCCTGCTGGACCTTCCCCCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/604654‑604803 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccccggCGACCAGGGTGTCGGTCGACACCGCCAGTTGCTCACCGGGGGGAAGGTCCAGCAGGGCGCAGTCGTCGCCGATACCCAGCGCCACGCCCTCGCCGCCCTGCGCACAGGGCGCTGCGGCGAAGTAATGGTTGATCAGCTCGAAC  <  NC_002947/604838‑604696                                                                                                                                                                                                                                                                                                       GGCGAACAAGCGCTGATCCTGGCGCTGCCTGGCCATGGGTGAGTTCGAGCTGATCAACCATTACTTCGCCGCAGCGCCCTGTGCGCAGGGCGGCGAGGGCGTGGCGCTGGGTATCGGCGACGACTGCGCCCTGCTGGCCCTTCCCCCCG                                                                                                                                                  >  2:215661/1‑149  GCGAACAAGCGCTGATCCTGGCGCTGCCTGGCCATGGGTGAGTTCGAGCTGATCAACCATTACTTCGCCGCAGCGCCCTGTGCGCAGGGCGGCGAGGGCGTGGCGCTGGGTATCGGCGACGACTGCGCCCTGCTGGACCTTCCCCCCGG                                                                                                                                                 >  5:217260/1‑149                                               GAGCTGATCAACCATTACTTCGCCGCAGCGCCCTGTGCGCAGGGCGGCGAGGGCGTGGCGCTGGGTATCGGCGACGACTGCGCCCTGCTGGACCTTCCCCCCGGCGACCAGGGTGTCGGTCGACACCGCCAGTTGCTCACCGGGGGGAA                                                                                                    <  7:21170/149‑1                                                         ACCATTACTTCGCCGCAGCGCCCTGTGCGCAGGGCGGCGAGGGCGTGGCGCTGGGTATCGGCGACGACTGCGCCCTGCTGGACCTTCCCCCCGGCGACCAGGGTGTCGGTCGACACCGCCAGTTGCTCACCGG                                                                                                          <  7:46918/133‑1                                                         ACCATTACTTCGCCGCAGCGCCCTGTGCGCAGGGCGGCGAGGGCGTGGCGCTGGGTATCGGCGACGACTGCGCCCTGCTGGACCTTCCCCCCGGCGACCAGGGTGTCGGTCGACACCGCCAGTTGCTCACCGG                                                                                                          >  8:46918/1‑133                                                                                                                                                 CCCCGGCGACCAGGGTGTCGGTCGACACCGCCAGTTGCTCACCGGGGGGAAGGTCCAGCAGGGCGCAGTCGTCGCCGATACCCAGCGCCACGCCCTCGCCGCCCTGCGCACAGGGCGCTGCGGCGAAGTAATGGTTGATCAGCTCGAAC  <  4:112961/149‑1                                                                                                                                                    CGGCGACCAGGGTGTCGGTCGACACCGCCAGTTGCTCACCGGGGGGAAGGTCCAGCAGGGCGCAGTCGTCGCCGATACCCAGCGCCACGCCCTCGCCGCCCTGCGCACAGGGCGCTGCGGCGAAGTAATG                  <  7:62877/130‑1                                                                                                                                                    CGGCGACCAGGGTGTCGGTCGACACCGCCAGTTGCTCACCGGGGGGAAGGTCCAGCAGGGCGCAGTCGTCGCCGATACCCAGCGCCACGCCCTCGCCGCCCTGCGCACAGGGCGCTGCGGCGAAGTAATG                  >  8:62877/1‑130                                                                                                                                                    CGGCGACCAGGGTGTCGGTCGACACCGCCAGTTGCTCACCGGGGGGAAGGTCCAGCAGGGCGCAGTCGTCGCCGATACCCAGCGCCACGCCCTCGCCGCCCTGCGCACAGGGCGCTGCGGCGAA                        <  5:189073/124‑1                                                                                                                                                    CGGCGACCAGGGTGTCGGTCGACACCGCCAGTTGCTCACCGGGGGGAAGGTCCAGCAGGGCGCAGTCGTCGCCGATACCCAGCGCCACGCCCTCGCCGCCCTGCGCACAGGGCGCTGCGGCGAA                        >  6:189073/1‑124                                                                                                                                                                                                                                                                                                       GGCGAACAAGCGCTGATCCTGGCGCTGCCTGGCCATGGGTGAGTTCGAGCTGATCAACCATTACTTCGCCGCAGCGCCCTGTGCGCAGGGCGGCGAGGGCGTGGCGCTGGGTATCGGCGACGACTGCGCCCTGCTGGACCTTCCCCCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/604654‑604803 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccccggCGACCAGGGTGTCGGTCGACACCGCCAGTTGCTCACCGGGGGGAAGGTCCAGCAGGGCGCAGTCGTCGCCGATACCCAGCGCCACGCCCTCGCCGCCCTGCGCACAGGGCGCTGCGGCGAAGTAATGGTTGATCAGCTCGAAC  <  NC_002947/604838‑604696

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.